Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS16810

Experiment: L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS16815 and HMPREF1058_RS16810 are separated by 410 nucleotidesHMPREF1058_RS16810 and HMPREF1058_RS16805 are separated by 362 nucleotides HMPREF1058_RS16815: HMPREF1058_RS16815 - dihydroxy-acid dehydratase, at 588,291 to 590,093 _RS16815 HMPREF1058_RS16810: HMPREF1058_RS16810 - hypothetical protein, at 590,504 to 590,878 _RS16810 HMPREF1058_RS16805: HMPREF1058_RS16805 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 591,241 to 591,819 _RS16805 Position (kb) 590 591Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 589.511 kb on + strand, within HMPREF1058_RS16815at 589.544 kb on + strand, within HMPREF1058_RS16815at 589.677 kb on + strand, within HMPREF1058_RS16815at 589.730 kb on + strand, within HMPREF1058_RS16815at 589.773 kb on - strand, within HMPREF1058_RS16815at 589.775 kb on - strand, within HMPREF1058_RS16815at 589.817 kb on - strand, within HMPREF1058_RS16815at 589.817 kb on - strand, within HMPREF1058_RS16815at 589.818 kb on + strand, within HMPREF1058_RS16815at 589.819 kb on - strand, within HMPREF1058_RS16815at 589.824 kb on - strand, within HMPREF1058_RS16815at 589.842 kb on + strand, within HMPREF1058_RS16815at 589.843 kb on - strand, within HMPREF1058_RS16815at 589.923 kb on + strandat 589.940 kb on + strandat 589.972 kb on - strandat 589.980 kb on + strandat 589.981 kb on - strandat 590.097 kb on - strandat 590.107 kb on + strandat 590.118 kb on - strandat 590.119 kb on + strandat 590.119 kb on + strandat 590.119 kb on + strandat 590.120 kb on - strandat 590.120 kb on - strandat 590.166 kb on - strandat 590.175 kb on + strandat 590.176 kb on - strandat 590.180 kb on - strandat 590.186 kb on - strandat 590.192 kb on - strandat 590.192 kb on - strandat 590.239 kb on + strandat 590.239 kb on + strandat 590.261 kb on + strandat 590.267 kb on - strandat 590.270 kb on - strandat 590.273 kb on - strandat 590.279 kb on - strandat 590.279 kb on - strandat 590.426 kb on - strandat 590.506 kb on - strandat 590.506 kb on - strandat 590.529 kb on + strandat 590.529 kb on + strandat 590.530 kb on - strandat 590.530 kb on - strandat 590.530 kb on - strandat 590.557 kb on + strand, within HMPREF1058_RS16810at 590.558 kb on - strand, within HMPREF1058_RS16810at 590.558 kb on - strand, within HMPREF1058_RS16810at 590.578 kb on - strand, within HMPREF1058_RS16810at 590.578 kb on - strand, within HMPREF1058_RS16810at 590.605 kb on + strand, within HMPREF1058_RS16810at 590.606 kb on - strand, within HMPREF1058_RS16810at 590.717 kb on - strand, within HMPREF1058_RS16810at 590.786 kb on + strand, within HMPREF1058_RS16810at 590.787 kb on - strand, within HMPREF1058_RS16810at 590.830 kb on + strand, within HMPREF1058_RS16810at 590.843 kb on + strandat 590.867 kb on + strandat 590.919 kb on - strandat 590.926 kb on - strandat 590.936 kb on + strandat 590.937 kb on - strandat 590.947 kb on + strandat 590.950 kb on + strandat 590.951 kb on - strandat 591.112 kb on + strandat 591.115 kb on - strandat 591.141 kb on + strandat 591.150 kb on - strandat 591.219 kb on + strandat 591.232 kb on + strandat 591.268 kb on + strandat 591.268 kb on + strandat 591.269 kb on - strandat 591.277 kb on + strandat 591.324 kb on - strand, within HMPREF1058_RS16805at 591.387 kb on - strand, within HMPREF1058_RS16805at 591.454 kb on - strand, within HMPREF1058_RS16805at 591.480 kb on + strand, within HMPREF1058_RS16805at 591.480 kb on + strand, within HMPREF1058_RS16805at 591.486 kb on + strand, within HMPREF1058_RS16805at 591.523 kb on - strand, within HMPREF1058_RS16805at 591.575 kb on - strand, within HMPREF1058_RS16805at 591.584 kb on + strand, within HMPREF1058_RS16805at 591.640 kb on - strand, within HMPREF1058_RS16805at 591.668 kb on + strand, within HMPREF1058_RS16805at 591.710 kb on + strand, within HMPREF1058_RS16805at 591.781 kb on - strandat 591.818 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
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589,511 + HMPREF1058_RS16815 0.68 -2.9
589,544 + HMPREF1058_RS16815 0.69 -3.5
589,677 + HMPREF1058_RS16815 0.77 -3.5
589,730 + HMPREF1058_RS16815 0.80 -1.0
589,773 - HMPREF1058_RS16815 0.82 -3.2
589,775 - HMPREF1058_RS16815 0.82 -1.0
589,817 - HMPREF1058_RS16815 0.85 -3.5
589,817 - HMPREF1058_RS16815 0.85 -1.0
589,818 + HMPREF1058_RS16815 0.85 -0.8
589,819 - HMPREF1058_RS16815 0.85 -2.7
589,824 - HMPREF1058_RS16815 0.85 -4.0
589,842 + HMPREF1058_RS16815 0.86 -2.1
589,843 - HMPREF1058_RS16815 0.86 -0.7
589,923 + -1.2
589,940 + -0.8
589,972 - -0.3
589,980 + -3.5
589,981 - -2.7
590,097 - +1.1
590,107 + -0.7
590,118 - -0.6
590,119 + -1.8
590,119 + -2.8
590,119 + -3.1
590,120 - -0.4
590,120 - -0.1
590,166 - -1.3
590,175 + -4.4
590,176 - -2.4
590,180 - -3.3
590,186 - -4.5
590,192 - -3.1
590,192 - -2.1
590,239 + -1.7
590,239 + -2.7
590,261 + -1.9
590,267 - +0.4
590,270 - -0.7
590,273 - -0.5
590,279 - +0.7
590,279 - +0.3
590,426 - -0.3
590,506 - +0.8
590,506 - -0.7
590,529 + +0.3
590,529 + +0.1
590,530 - +0.3
590,530 - +0.0
590,530 - -0.1
590,557 + HMPREF1058_RS16810 0.14 +0.9
590,558 - HMPREF1058_RS16810 0.14 +1.5
590,558 - HMPREF1058_RS16810 0.14 -0.7
590,578 - HMPREF1058_RS16810 0.20 +0.7
590,578 - HMPREF1058_RS16810 0.20 +0.6
590,605 + HMPREF1058_RS16810 0.27 +1.0
590,606 - HMPREF1058_RS16810 0.27 -0.2
590,717 - HMPREF1058_RS16810 0.57 +1.7
590,786 + HMPREF1058_RS16810 0.75 +0.9
590,787 - HMPREF1058_RS16810 0.75 +0.5
590,830 + HMPREF1058_RS16810 0.87 +0.9
590,843 + +0.3
590,867 + -0.9
590,919 - +0.3
590,926 - +0.2
590,936 + +1.7
590,937 - +0.4
590,947 + +0.4
590,950 + -0.4
590,951 - +1.3
591,112 + -0.5
591,115 - +0.5
591,141 + +0.3
591,150 - -0.8
591,219 + +0.3
591,232 + -0.1
591,268 + +1.5
591,268 + +1.1
591,269 - +1.8
591,277 + +0.8
591,324 - HMPREF1058_RS16805 0.14 +0.6
591,387 - HMPREF1058_RS16805 0.25 +0.1
591,454 - HMPREF1058_RS16805 0.37 -0.7
591,480 + HMPREF1058_RS16805 0.41 +2.1
591,480 + HMPREF1058_RS16805 0.41 +0.1
591,486 + HMPREF1058_RS16805 0.42 +0.9
591,523 - HMPREF1058_RS16805 0.49 +0.3
591,575 - HMPREF1058_RS16805 0.58 +1.2
591,584 + HMPREF1058_RS16805 0.59 +0.6
591,640 - HMPREF1058_RS16805 0.69 +1.0
591,668 + HMPREF1058_RS16805 0.74 -0.1
591,710 + HMPREF1058_RS16805 0.81 +0.7
591,781 - +2.1
591,818 - -0.2

Or see this region's nucleotide sequence