Experiment: L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06410 and HMPREF1058_RS06405 are separated by 131 nucleotides HMPREF1058_RS06405 and HMPREF1058_RS06400 are separated by 2 nucleotides
HMPREF1058_RS06410: HMPREF1058_RS06410 - elongation factor 4, at 482,771 to 484,552
_RS06410
HMPREF1058_RS06405: HMPREF1058_RS06405 - Na+/H+ antiporter NhaA, at 484,684 to 486,024
_RS06405
HMPREF1058_RS06400: HMPREF1058_RS06400 - PAS domain-containing sensor histidine kinase, at 486,027 to 488,300
_RS06400
Position (kb) 484
485
486
487 Strain fitness (log2 ratio) -2
-1
0
1 at 483.841 kb on + strand, within HMPREF1058_RS06410 at 484.157 kb on + strand, within HMPREF1058_RS06410 at 484.172 kb on + strand, within HMPREF1058_RS06410 at 484.294 kb on + strand, within HMPREF1058_RS06410 at 484.295 kb on - strand, within HMPREF1058_RS06410 at 484.372 kb on + strand, within HMPREF1058_RS06410 at 484.477 kb on + strand at 484.562 kb on - strand at 484.738 kb on + strand at 484.743 kb on + strand at 484.744 kb on - strand at 484.744 kb on - strand at 484.746 kb on + strand at 484.816 kb on - strand at 484.820 kb on - strand, within HMPREF1058_RS06405 at 484.820 kb on - strand, within HMPREF1058_RS06405 at 484.820 kb on - strand, within HMPREF1058_RS06405 at 484.961 kb on + strand, within HMPREF1058_RS06405 at 485.059 kb on + strand, within HMPREF1058_RS06405 at 485.063 kb on - strand, within HMPREF1058_RS06405 at 485.347 kb on - strand at 485.365 kb on - strand, within HMPREF1058_RS06405 at 485.450 kb on - strand, within HMPREF1058_RS06405 at 485.460 kb on + strand, within HMPREF1058_RS06405 at 485.460 kb on + strand, within HMPREF1058_RS06405 at 485.460 kb on + strand, within HMPREF1058_RS06405 at 485.460 kb on + strand, within HMPREF1058_RS06405 at 485.460 kb on + strand, within HMPREF1058_RS06405 at 485.461 kb on - strand, within HMPREF1058_RS06405 at 485.461 kb on - strand, within HMPREF1058_RS06405 at 485.464 kb on + strand, within HMPREF1058_RS06405 at 485.465 kb on - strand, within HMPREF1058_RS06405 at 485.465 kb on - strand, within HMPREF1058_RS06405 at 485.586 kb on - strand, within HMPREF1058_RS06405 at 485.633 kb on - strand, within HMPREF1058_RS06405 at 485.765 kb on - strand, within HMPREF1058_RS06405 at 485.786 kb on + strand, within HMPREF1058_RS06405 at 486.022 kb on + strand at 486.221 kb on + strand at 486.354 kb on + strand, within HMPREF1058_RS06400 at 486.355 kb on - strand, within HMPREF1058_RS06400 at 486.355 kb on - strand, within HMPREF1058_RS06400 at 486.413 kb on + strand, within HMPREF1058_RS06400 at 486.485 kb on + strand, within HMPREF1058_RS06400 at 486.499 kb on - strand, within HMPREF1058_RS06400 at 486.507 kb on + strand, within HMPREF1058_RS06400 at 486.508 kb on - strand, within HMPREF1058_RS06400 at 486.891 kb on + strand, within HMPREF1058_RS06400 at 486.892 kb on - strand, within HMPREF1058_RS06400 at 486.940 kb on + strand, within HMPREF1058_RS06400 at 486.941 kb on - strand, within HMPREF1058_RS06400 at 486.941 kb on - strand, within HMPREF1058_RS06400 at 486.941 kb on - strand, within HMPREF1058_RS06400 at 486.948 kb on + strand, within HMPREF1058_RS06400
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen remove 483,841 + HMPREF1058_RS06410 0.60 -0.1 484,157 + HMPREF1058_RS06410 0.78 -0.2 484,172 + HMPREF1058_RS06410 0.79 +0.6 484,294 + HMPREF1058_RS06410 0.85 -0.4 484,295 - HMPREF1058_RS06410 0.86 -0.4 484,372 + HMPREF1058_RS06410 0.90 -0.4 484,477 + -1.1 484,562 - -0.7 484,738 + -1.6 484,743 + -0.4 484,744 - -1.2 484,744 - -0.8 484,746 + -1.9 484,816 - -1.1 484,820 - HMPREF1058_RS06405 0.10 +1.6 484,820 - HMPREF1058_RS06405 0.10 -0.0 484,820 - HMPREF1058_RS06405 0.10 -0.1 484,961 + HMPREF1058_RS06405 0.21 +0.4 485,059 + HMPREF1058_RS06405 0.28 -1.6 485,063 - HMPREF1058_RS06405 0.28 -0.8 485,347 - -0.8 485,365 - HMPREF1058_RS06405 0.51 -1.6 485,450 - HMPREF1058_RS06405 0.57 -0.4 485,460 + HMPREF1058_RS06405 0.58 -1.2 485,460 + HMPREF1058_RS06405 0.58 -1.3 485,460 + HMPREF1058_RS06405 0.58 +0.8 485,460 + HMPREF1058_RS06405 0.58 -2.5 485,460 + HMPREF1058_RS06405 0.58 -2.1 485,461 - HMPREF1058_RS06405 0.58 -0.0 485,461 - HMPREF1058_RS06405 0.58 -1.1 485,464 + HMPREF1058_RS06405 0.58 -1.1 485,465 - HMPREF1058_RS06405 0.58 -2.0 485,465 - HMPREF1058_RS06405 0.58 -2.6 485,586 - HMPREF1058_RS06405 0.67 -1.6 485,633 - HMPREF1058_RS06405 0.71 -1.4 485,765 - HMPREF1058_RS06405 0.81 +0.8 485,786 + HMPREF1058_RS06405 0.82 -2.3 486,022 + -0.8 486,221 + -0.4 486,354 + HMPREF1058_RS06400 0.14 -0.5 486,355 - HMPREF1058_RS06400 0.14 -1.2 486,355 - HMPREF1058_RS06400 0.14 +0.3 486,413 + HMPREF1058_RS06400 0.17 -0.6 486,485 + HMPREF1058_RS06400 0.20 +0.2 486,499 - HMPREF1058_RS06400 0.21 -1.1 486,507 + HMPREF1058_RS06400 0.21 +0.2 486,508 - HMPREF1058_RS06400 0.21 +1.0 486,891 + HMPREF1058_RS06400 0.38 -1.1 486,892 - HMPREF1058_RS06400 0.38 -0.8 486,940 + HMPREF1058_RS06400 0.40 +0.4 486,941 - HMPREF1058_RS06400 0.40 -0.8 486,941 - HMPREF1058_RS06400 0.40 -0.3 486,941 - HMPREF1058_RS06400 0.40 +0.7 486,948 + HMPREF1058_RS06400 0.41 +0.8
Or see this region's nucleotide sequence