Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02765

Experiment: L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS02770 and HMPREF1058_RS02765 are separated by 93 nucleotidesHMPREF1058_RS02765 and HMPREF1058_RS02760 are separated by 12 nucleotides HMPREF1058_RS02770: HMPREF1058_RS02770 - MATE family efflux transporter, at 97,643 to 98,953 _RS02770 HMPREF1058_RS02765: HMPREF1058_RS02765 - insulinase family protein, at 99,047 to 100,291 _RS02765 HMPREF1058_RS02760: HMPREF1058_RS02760 - peptidylprolyl isomerase, at 100,304 to 101,149 _RS02760 Position (kb) 99 100 101Strain fitness (log2 ratio) -1 0 1 2 3at 98.106 kb on + strand, within HMPREF1058_RS02770at 98.107 kb on - strand, within HMPREF1058_RS02770at 98.107 kb on - strand, within HMPREF1058_RS02770at 98.164 kb on + strand, within HMPREF1058_RS02770at 98.284 kb on + strand, within HMPREF1058_RS02770at 98.311 kb on + strand, within HMPREF1058_RS02770at 98.312 kb on - strand, within HMPREF1058_RS02770at 98.312 kb on - strand, within HMPREF1058_RS02770at 98.442 kb on + strand, within HMPREF1058_RS02770at 98.478 kb on - strand, within HMPREF1058_RS02770at 98.561 kb on + strand, within HMPREF1058_RS02770at 98.643 kb on - strand, within HMPREF1058_RS02770at 98.804 kb on - strand, within HMPREF1058_RS02770at 98.804 kb on - strand, within HMPREF1058_RS02770at 98.897 kb on + strandat 98.897 kb on + strandat 98.925 kb on - strandat 98.944 kb on - strandat 98.985 kb on - strandat 99.038 kb on - strandat 99.043 kb on - strandat 99.067 kb on + strandat 99.067 kb on + strandat 99.069 kb on + strandat 99.072 kb on + strandat 99.073 kb on - strandat 99.156 kb on - strandat 99.415 kb on + strand, within HMPREF1058_RS02765at 99.416 kb on - strand, within HMPREF1058_RS02765at 99.417 kb on + strand, within HMPREF1058_RS02765at 99.418 kb on - strand, within HMPREF1058_RS02765at 99.438 kb on - strand, within HMPREF1058_RS02765at 99.504 kb on - strand, within HMPREF1058_RS02765at 99.520 kb on - strand, within HMPREF1058_RS02765at 99.712 kb on + strand, within HMPREF1058_RS02765at 99.713 kb on - strand, within HMPREF1058_RS02765at 99.753 kb on + strand, within HMPREF1058_RS02765at 99.847 kb on + strand, within HMPREF1058_RS02765at 99.847 kb on + strand, within HMPREF1058_RS02765at 99.847 kb on + strand, within HMPREF1058_RS02765at 99.848 kb on - strand, within HMPREF1058_RS02765at 99.849 kb on + strand, within HMPREF1058_RS02765at 99.849 kb on + strand, within HMPREF1058_RS02765at 99.976 kb on + strand, within HMPREF1058_RS02765at 99.977 kb on - strand, within HMPREF1058_RS02765at 100.032 kb on + strand, within HMPREF1058_RS02765at 100.044 kb on - strand, within HMPREF1058_RS02765at 100.197 kb on + strandat 100.228 kb on + strandat 100.245 kb on - strandat 100.313 kb on - strandat 100.313 kb on - strandat 100.370 kb on + strandat 100.388 kb on + strandat 100.423 kb on + strand, within HMPREF1058_RS02760at 100.425 kb on + strand, within HMPREF1058_RS02760at 100.465 kb on - strand, within HMPREF1058_RS02760at 100.547 kb on + strand, within HMPREF1058_RS02760at 100.547 kb on + strand, within HMPREF1058_RS02760at 100.591 kb on - strand, within HMPREF1058_RS02760at 100.593 kb on - strand, within HMPREF1058_RS02760at 100.652 kb on + strand, within HMPREF1058_RS02760at 100.710 kb on + strand, within HMPREF1058_RS02760at 100.710 kb on + strand, within HMPREF1058_RS02760at 100.711 kb on - strand, within HMPREF1058_RS02760at 100.936 kb on - strand, within HMPREF1058_RS02760at 100.937 kb on + strand, within HMPREF1058_RS02760at 100.938 kb on - strand, within HMPREF1058_RS02760at 100.991 kb on - strand, within HMPREF1058_RS02760at 100.992 kb on + strand, within HMPREF1058_RS02760at 101.124 kb on - strandat 101.127 kb on - strandat 101.197 kb on + strandat 101.251 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
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98,106 + HMPREF1058_RS02770 0.35 -0.4
98,107 - HMPREF1058_RS02770 0.35 -0.8
98,107 - HMPREF1058_RS02770 0.35 -0.2
98,164 + HMPREF1058_RS02770 0.40 -0.1
98,284 + HMPREF1058_RS02770 0.49 +1.2
98,311 + HMPREF1058_RS02770 0.51 -0.6
98,312 - HMPREF1058_RS02770 0.51 +0.4
98,312 - HMPREF1058_RS02770 0.51 -0.9
98,442 + HMPREF1058_RS02770 0.61 +2.2
98,478 - HMPREF1058_RS02770 0.64 -0.1
98,561 + HMPREF1058_RS02770 0.70 -0.2
98,643 - HMPREF1058_RS02770 0.76 +0.7
98,804 - HMPREF1058_RS02770 0.89 -0.6
98,804 - HMPREF1058_RS02770 0.89 -0.4
98,897 + -0.5
98,897 + -1.1
98,925 - -0.2
98,944 - +1.1
98,985 - -0.1
99,038 - -0.2
99,043 - -0.2
99,067 + +2.4
99,067 + -0.9
99,069 + +2.0
99,072 + +0.5
99,073 - +1.0
99,156 - +0.9
99,415 + HMPREF1058_RS02765 0.30 +1.4
99,416 - HMPREF1058_RS02765 0.30 +1.4
99,417 + HMPREF1058_RS02765 0.30 +1.5
99,418 - HMPREF1058_RS02765 0.30 +0.9
99,438 - HMPREF1058_RS02765 0.31 +0.2
99,504 - HMPREF1058_RS02765 0.37 +0.9
99,520 - HMPREF1058_RS02765 0.38 +0.9
99,712 + HMPREF1058_RS02765 0.53 +1.7
99,713 - HMPREF1058_RS02765 0.53 +1.2
99,753 + HMPREF1058_RS02765 0.57 +1.3
99,847 + HMPREF1058_RS02765 0.64 +1.2
99,847 + HMPREF1058_RS02765 0.64 +1.4
99,847 + HMPREF1058_RS02765 0.64 +1.2
99,848 - HMPREF1058_RS02765 0.64 +0.6
99,849 + HMPREF1058_RS02765 0.64 +1.3
99,849 + HMPREF1058_RS02765 0.64 +2.1
99,976 + HMPREF1058_RS02765 0.75 +1.0
99,977 - HMPREF1058_RS02765 0.75 +2.2
100,032 + HMPREF1058_RS02765 0.79 +1.5
100,044 - HMPREF1058_RS02765 0.80 +1.5
100,197 + +0.8
100,228 + +1.4
100,245 - +0.8
100,313 - -0.1
100,313 - -1.4
100,370 + +0.4
100,388 + +1.8
100,423 + HMPREF1058_RS02760 0.14 +1.4
100,425 + HMPREF1058_RS02760 0.14 +2.9
100,465 - HMPREF1058_RS02760 0.19 -0.5
100,547 + HMPREF1058_RS02760 0.29 +1.3
100,547 + HMPREF1058_RS02760 0.29 +1.7
100,591 - HMPREF1058_RS02760 0.34 -1.4
100,593 - HMPREF1058_RS02760 0.34 +0.5
100,652 + HMPREF1058_RS02760 0.41 +0.6
100,710 + HMPREF1058_RS02760 0.48 +1.7
100,710 + HMPREF1058_RS02760 0.48 -0.4
100,711 - HMPREF1058_RS02760 0.48 -0.6
100,936 - HMPREF1058_RS02760 0.75 -0.2
100,937 + HMPREF1058_RS02760 0.75 +1.4
100,938 - HMPREF1058_RS02760 0.75 -0.5
100,991 - HMPREF1058_RS02760 0.81 +1.1
100,992 + HMPREF1058_RS02760 0.81 +1.4
101,124 - -0.5
101,127 - +0.3
101,197 + +0.9
101,251 + +0.4

Or see this region's nucleotide sequence