Experiment: L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10010 and HMPREF1058_RS10005 are separated by 11 nucleotides HMPREF1058_RS10005 and HMPREF1058_RS10000 are separated by 280 nucleotides HMPREF1058_RS10000 and HMPREF1058_RS09995 are separated by 102 nucleotides HMPREF1058_RS09995 and HMPREF1058_RS09990 are separated by 11 nucleotides
HMPREF1058_RS10010: HMPREF1058_RS10010 - hypothetical protein, at 748,391 to 748,636
_RS10010
HMPREF1058_RS10005: HMPREF1058_RS10005 - hypothetical protein, at 748,648 to 748,947
_RS10005
HMPREF1058_RS10000: HMPREF1058_RS10000 - 30S ribosomal protein S15, at 749,228 to 749,497
_RS10000
HMPREF1058_RS09995: HMPREF1058_RS09995 - S-ribosylhomocysteine lyase, at 749,600 to 750,085
_RS09995
HMPREF1058_RS09990: HMPREF1058_RS09990 - 5'-methylthioadenosine/adenosylhomocysteine nucleosidase, at 750,097 to 750,792
_RS09990
Position (kb) 749
750
751 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 748.618 kb on - strand at 748.658 kb on + strand at 748.661 kb on + strand at 748.701 kb on - strand, within HMPREF1058_RS10005 at 748.702 kb on + strand, within HMPREF1058_RS10005 at 748.704 kb on + strand, within HMPREF1058_RS10005 at 748.704 kb on + strand, within HMPREF1058_RS10005 at 748.705 kb on - strand, within HMPREF1058_RS10005 at 748.738 kb on + strand, within HMPREF1058_RS10005 at 748.739 kb on - strand, within HMPREF1058_RS10005 at 748.842 kb on - strand, within HMPREF1058_RS10005 at 748.842 kb on - strand, within HMPREF1058_RS10005 at 748.893 kb on - strand, within HMPREF1058_RS10005 at 748.952 kb on - strand at 749.089 kb on + strand at 749.560 kb on - strand at 749.572 kb on + strand at 749.611 kb on + strand at 749.616 kb on + strand at 749.617 kb on - strand at 749.619 kb on + strand at 749.620 kb on - strand at 749.620 kb on - strand at 749.620 kb on - strand at 749.706 kb on + strand, within HMPREF1058_RS09995 at 749.795 kb on - strand, within HMPREF1058_RS09995 at 749.830 kb on - strand, within HMPREF1058_RS09995 at 749.862 kb on + strand, within HMPREF1058_RS09995 at 749.884 kb on + strand, within HMPREF1058_RS09995 at 749.885 kb on - strand, within HMPREF1058_RS09995 at 749.885 kb on - strand, within HMPREF1058_RS09995 at 749.921 kb on + strand, within HMPREF1058_RS09995 at 749.921 kb on + strand, within HMPREF1058_RS09995 at 749.921 kb on + strand, within HMPREF1058_RS09995 at 749.927 kb on - strand, within HMPREF1058_RS09995 at 750.030 kb on + strand, within HMPREF1058_RS09995 at 750.030 kb on + strand, within HMPREF1058_RS09995 at 750.030 kb on + strand, within HMPREF1058_RS09995 at 750.031 kb on - strand, within HMPREF1058_RS09995 at 750.031 kb on - strand, within HMPREF1058_RS09995 at 750.031 kb on - strand, within HMPREF1058_RS09995 at 750.035 kb on - strand, within HMPREF1058_RS09995 at 750.088 kb on + strand at 750.100 kb on + strand at 750.179 kb on + strand, within HMPREF1058_RS09990 at 750.179 kb on + strand, within HMPREF1058_RS09990 at 750.242 kb on - strand, within HMPREF1058_RS09990 at 750.246 kb on + strand, within HMPREF1058_RS09990 at 750.248 kb on + strand, within HMPREF1058_RS09990 at 750.248 kb on + strand, within HMPREF1058_RS09990 at 750.248 kb on + strand, within HMPREF1058_RS09990 at 750.250 kb on + strand, within HMPREF1058_RS09990 at 750.250 kb on + strand, within HMPREF1058_RS09990 at 750.250 kb on + strand, within HMPREF1058_RS09990 at 750.250 kb on + strand, within HMPREF1058_RS09990 at 750.250 kb on + strand, within HMPREF1058_RS09990 at 750.251 kb on - strand, within HMPREF1058_RS09990 at 750.252 kb on + strand, within HMPREF1058_RS09990 at 750.252 kb on + strand, within HMPREF1058_RS09990 at 750.253 kb on - strand, within HMPREF1058_RS09990 at 750.254 kb on + strand, within HMPREF1058_RS09990 at 750.289 kb on + strand, within HMPREF1058_RS09990 at 750.460 kb on + strand, within HMPREF1058_RS09990 at 750.461 kb on - strand, within HMPREF1058_RS09990 at 750.470 kb on + strand, within HMPREF1058_RS09990 at 750.474 kb on + strand, within HMPREF1058_RS09990 at 750.475 kb on - strand, within HMPREF1058_RS09990 at 750.493 kb on + strand, within HMPREF1058_RS09990 at 750.493 kb on + strand, within HMPREF1058_RS09990 at 750.494 kb on - strand, within HMPREF1058_RS09990 at 750.494 kb on - strand, within HMPREF1058_RS09990 at 750.505 kb on + strand, within HMPREF1058_RS09990 at 750.505 kb on + strand, within HMPREF1058_RS09990 at 750.506 kb on - strand, within HMPREF1058_RS09990 at 750.639 kb on + strand, within HMPREF1058_RS09990 at 750.669 kb on + strand, within HMPREF1058_RS09990 at 750.775 kb on + strand at 750.776 kb on - strand at 750.776 kb on - strand at 750.803 kb on + strand at 750.807 kb on + strand at 750.838 kb on + strand at 750.838 kb on + strand at 750.838 kb on + strand at 750.839 kb on - strand at 750.839 kb on - strand at 750.839 kb on - strand at 750.877 kb on + strand at 750.921 kb on + strand at 750.942 kb on - strand at 750.942 kb on - strand at 750.945 kb on + strand at 751.052 kb on - strand at 751.084 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen remove 748,618 - -1.1 748,658 + +0.5 748,661 + -0.6 748,701 - HMPREF1058_RS10005 0.18 -0.4 748,702 + HMPREF1058_RS10005 0.18 -1.6 748,704 + HMPREF1058_RS10005 0.19 -0.6 748,704 + HMPREF1058_RS10005 0.19 +0.8 748,705 - HMPREF1058_RS10005 0.19 -1.4 748,738 + HMPREF1058_RS10005 0.30 +2.5 748,739 - HMPREF1058_RS10005 0.30 -0.7 748,842 - HMPREF1058_RS10005 0.65 -0.7 748,842 - HMPREF1058_RS10005 0.65 -1.7 748,893 - HMPREF1058_RS10005 0.82 -1.2 748,952 - -1.2 749,089 + -1.1 749,560 - -1.8 749,572 + -0.0 749,611 + -0.6 749,616 + -1.3 749,617 - +0.4 749,619 + +0.3 749,620 - +0.1 749,620 - -0.9 749,620 - +0.1 749,706 + HMPREF1058_RS09995 0.22 -1.6 749,795 - HMPREF1058_RS09995 0.40 -1.2 749,830 - HMPREF1058_RS09995 0.47 +1.2 749,862 + HMPREF1058_RS09995 0.54 -3.4 749,884 + HMPREF1058_RS09995 0.58 +0.2 749,885 - HMPREF1058_RS09995 0.59 -1.1 749,885 - HMPREF1058_RS09995 0.59 -1.8 749,921 + HMPREF1058_RS09995 0.66 -0.4 749,921 + HMPREF1058_RS09995 0.66 -0.8 749,921 + HMPREF1058_RS09995 0.66 -2.1 749,927 - HMPREF1058_RS09995 0.67 -1.7 750,030 + HMPREF1058_RS09995 0.88 -3.1 750,030 + HMPREF1058_RS09995 0.88 -1.4 750,030 + HMPREF1058_RS09995 0.88 -0.7 750,031 - HMPREF1058_RS09995 0.89 -1.0 750,031 - HMPREF1058_RS09995 0.89 -1.3 750,031 - HMPREF1058_RS09995 0.89 -1.4 750,035 - HMPREF1058_RS09995 0.90 -1.3 750,088 + -1.0 750,100 + -4.0 750,179 + HMPREF1058_RS09990 0.12 -1.4 750,179 + HMPREF1058_RS09990 0.12 +1.2 750,242 - HMPREF1058_RS09990 0.21 -3.1 750,246 + HMPREF1058_RS09990 0.21 -0.5 750,248 + HMPREF1058_RS09990 0.22 -0.5 750,248 + HMPREF1058_RS09990 0.22 -1.0 750,248 + HMPREF1058_RS09990 0.22 -0.5 750,250 + HMPREF1058_RS09990 0.22 -1.6 750,250 + HMPREF1058_RS09990 0.22 +1.6 750,250 + HMPREF1058_RS09990 0.22 -2.3 750,250 + HMPREF1058_RS09990 0.22 -1.5 750,250 + HMPREF1058_RS09990 0.22 -1.4 750,251 - HMPREF1058_RS09990 0.22 +0.9 750,252 + HMPREF1058_RS09990 0.22 -2.1 750,252 + HMPREF1058_RS09990 0.22 -0.5 750,253 - HMPREF1058_RS09990 0.22 +0.5 750,254 + HMPREF1058_RS09990 0.23 -0.5 750,289 + HMPREF1058_RS09990 0.28 -0.8 750,460 + HMPREF1058_RS09990 0.52 +0.2 750,461 - HMPREF1058_RS09990 0.52 -1.7 750,470 + HMPREF1058_RS09990 0.54 -0.0 750,474 + HMPREF1058_RS09990 0.54 -1.4 750,475 - HMPREF1058_RS09990 0.54 -2.0 750,493 + HMPREF1058_RS09990 0.57 -2.1 750,493 + HMPREF1058_RS09990 0.57 -0.5 750,494 - HMPREF1058_RS09990 0.57 -2.2 750,494 - HMPREF1058_RS09990 0.57 -2.3 750,505 + HMPREF1058_RS09990 0.59 -2.6 750,505 + HMPREF1058_RS09990 0.59 +0.1 750,506 - HMPREF1058_RS09990 0.59 -2.6 750,639 + HMPREF1058_RS09990 0.78 -2.7 750,669 + HMPREF1058_RS09990 0.82 -1.5 750,775 + +0.4 750,776 - -0.5 750,776 - +0.8 750,803 + -2.8 750,807 + -1.0 750,838 + -0.4 750,838 + -1.9 750,838 + -2.0 750,839 - -2.2 750,839 - +2.5 750,839 - -1.3 750,877 + +1.0 750,921 + +0.1 750,942 - +1.0 750,942 - -0.3 750,945 + -1.0 751,052 - +0.3 751,084 + -1.1
Or see this region's nucleotide sequence