Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS06800

Experiment: L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS06805 and HMPREF1058_RS06800 are separated by 3 nucleotidesHMPREF1058_RS06800 and HMPREF1058_RS06795 are separated by 143 nucleotidesHMPREF1058_RS06795 and HMPREF1058_RS06790 are separated by 3 nucleotides HMPREF1058_RS06805: HMPREF1058_RS06805 - endonuclease/exonuclease/phosphatase family protein, at 392,825 to 393,886 _RS06805 HMPREF1058_RS06800: HMPREF1058_RS06800 - response regulator, at 393,890 to 395,740 _RS06800 HMPREF1058_RS06795: HMPREF1058_RS06795 - response regulator, at 395,884 to 396,240 _RS06795 HMPREF1058_RS06790: HMPREF1058_RS06790 - glycosyltransferase family 2 protein, at 396,244 to 397,449 _RS06790 Position (kb) 393 394 395 396Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 392.922 kb on + strandat 392.922 kb on + strandat 392.923 kb on - strandat 393.059 kb on + strand, within HMPREF1058_RS06805at 393.059 kb on + strand, within HMPREF1058_RS06805at 393.163 kb on - strand, within HMPREF1058_RS06805at 393.413 kb on - strand, within HMPREF1058_RS06805at 393.421 kb on + strand, within HMPREF1058_RS06805at 393.429 kb on - strand, within HMPREF1058_RS06805at 393.564 kb on + strand, within HMPREF1058_RS06805at 393.564 kb on + strand, within HMPREF1058_RS06805at 393.636 kb on + strand, within HMPREF1058_RS06805at 393.785 kb on + strandat 393.845 kb on - strandat 393.845 kb on - strandat 393.902 kb on + strandat 393.902 kb on + strandat 393.906 kb on + strandat 393.917 kb on - strandat 393.986 kb on + strandat 393.987 kb on - strandat 393.987 kb on - strandat 394.002 kb on + strandat 394.008 kb on + strandat 394.016 kb on + strandat 394.094 kb on + strand, within HMPREF1058_RS06800at 394.095 kb on - strand, within HMPREF1058_RS06800at 394.096 kb on + strand, within HMPREF1058_RS06800at 394.123 kb on - strand, within HMPREF1058_RS06800at 394.137 kb on - strand, within HMPREF1058_RS06800at 394.264 kb on + strand, within HMPREF1058_RS06800at 394.265 kb on - strand, within HMPREF1058_RS06800at 394.313 kb on - strand, within HMPREF1058_RS06800at 394.386 kb on - strand, within HMPREF1058_RS06800at 394.397 kb on + strand, within HMPREF1058_RS06800at 394.526 kb on + strand, within HMPREF1058_RS06800at 394.574 kb on - strand, within HMPREF1058_RS06800at 394.603 kb on + strand, within HMPREF1058_RS06800at 394.603 kb on + strand, within HMPREF1058_RS06800at 394.604 kb on - strand, within HMPREF1058_RS06800at 394.716 kb on + strand, within HMPREF1058_RS06800at 394.728 kb on - strand, within HMPREF1058_RS06800at 394.764 kb on + strand, within HMPREF1058_RS06800at 394.765 kb on - strand, within HMPREF1058_RS06800at 394.856 kb on - strand, within HMPREF1058_RS06800at 394.863 kb on + strand, within HMPREF1058_RS06800at 395.026 kb on + strand, within HMPREF1058_RS06800at 395.027 kb on - strand, within HMPREF1058_RS06800at 395.053 kb on + strand, within HMPREF1058_RS06800at 395.054 kb on - strand, within HMPREF1058_RS06800at 395.054 kb on - strand, within HMPREF1058_RS06800at 395.055 kb on + strand, within HMPREF1058_RS06800at 395.055 kb on + strandat 395.055 kb on + strand, within HMPREF1058_RS06800at 395.055 kb on + strand, within HMPREF1058_RS06800at 395.056 kb on - strand, within HMPREF1058_RS06800at 395.056 kb on - strand, within HMPREF1058_RS06800at 395.056 kb on - strand, within HMPREF1058_RS06800at 395.056 kb on - strand, within HMPREF1058_RS06800at 395.058 kb on - strand, within HMPREF1058_RS06800at 395.058 kb on - strand, within HMPREF1058_RS06800at 395.117 kb on - strand, within HMPREF1058_RS06800at 395.200 kb on + strand, within HMPREF1058_RS06800at 395.202 kb on + strand, within HMPREF1058_RS06800at 395.202 kb on + strand, within HMPREF1058_RS06800at 395.203 kb on - strand, within HMPREF1058_RS06800at 395.212 kb on - strand, within HMPREF1058_RS06800at 395.212 kb on - strand, within HMPREF1058_RS06800at 395.265 kb on + strand, within HMPREF1058_RS06800at 395.302 kb on - strand, within HMPREF1058_RS06800at 395.302 kb on - strand, within HMPREF1058_RS06800at 395.316 kb on - strand, within HMPREF1058_RS06800at 395.452 kb on - strand, within HMPREF1058_RS06800at 395.455 kb on - strand, within HMPREF1058_RS06800at 395.455 kb on - strand, within HMPREF1058_RS06800at 395.477 kb on + strand, within HMPREF1058_RS06800at 395.478 kb on - strand, within HMPREF1058_RS06800at 395.484 kb on + strand, within HMPREF1058_RS06800at 395.535 kb on + strand, within HMPREF1058_RS06800at 395.566 kb on - strandat 395.574 kb on - strandat 395.575 kb on + strandat 395.576 kb on - strandat 395.586 kb on - strandat 395.590 kb on + strandat 395.591 kb on - strandat 395.656 kb on - strandat 395.668 kb on + strandat 395.671 kb on + strandat 395.672 kb on - strandat 395.672 kb on - strandat 395.722 kb on + strandat 395.723 kb on - strandat 395.741 kb on - strandat 395.743 kb on + strandat 395.744 kb on - strandat 395.746 kb on + strandat 395.764 kb on - strandat 395.818 kb on - strandat 395.838 kb on - strandat 395.845 kb on + strandat 395.920 kb on - strand, within HMPREF1058_RS06795at 395.931 kb on - strand, within HMPREF1058_RS06795at 396.038 kb on + strand, within HMPREF1058_RS06795at 396.038 kb on + strand, within HMPREF1058_RS06795at 396.111 kb on - strand, within HMPREF1058_RS06795at 396.175 kb on + strand, within HMPREF1058_RS06795at 396.175 kb on + strand, within HMPREF1058_RS06795at 396.176 kb on - strand, within HMPREF1058_RS06795at 396.176 kb on - strand, within HMPREF1058_RS06795at 396.243 kb on - strandat 396.346 kb on - strandat 396.348 kb on - strandat 396.546 kb on - strand, within HMPREF1058_RS06790at 396.683 kb on + strand, within HMPREF1058_RS06790at 396.698 kb on + strand, within HMPREF1058_RS06790at 396.699 kb on - strand, within HMPREF1058_RS06790at 396.699 kb on - strand, within HMPREF1058_RS06790at 396.699 kb on - strand, within HMPREF1058_RS06790at 396.708 kb on + strand, within HMPREF1058_RS06790at 396.709 kb on - strand, within HMPREF1058_RS06790

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
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392,922 + +5.1
392,922 + +1.7
392,923 - +2.0
393,059 + HMPREF1058_RS06805 0.22 +3.1
393,059 + HMPREF1058_RS06805 0.22 +0.6
393,163 - HMPREF1058_RS06805 0.32 +3.4
393,413 - HMPREF1058_RS06805 0.55 +2.5
393,421 + HMPREF1058_RS06805 0.56 +2.5
393,429 - HMPREF1058_RS06805 0.57 -0.3
393,564 + HMPREF1058_RS06805 0.70 +4.7
393,564 + HMPREF1058_RS06805 0.70 +2.0
393,636 + HMPREF1058_RS06805 0.76 +4.1
393,785 + +3.8
393,845 - +2.7
393,845 - +2.4
393,902 + +2.0
393,902 + +2.9
393,906 + +3.0
393,917 - +0.9
393,986 + +3.1
393,987 - -1.3
393,987 - -1.4
394,002 + +4.3
394,008 + +3.7
394,016 + +1.4
394,094 + HMPREF1058_RS06800 0.11 +2.5
394,095 - HMPREF1058_RS06800 0.11 +0.1
394,096 + HMPREF1058_RS06800 0.11 +1.9
394,123 - HMPREF1058_RS06800 0.13 -1.0
394,137 - HMPREF1058_RS06800 0.13 +0.5
394,264 + HMPREF1058_RS06800 0.20 +5.5
394,265 - HMPREF1058_RS06800 0.20 +0.5
394,313 - HMPREF1058_RS06800 0.23 -0.5
394,386 - HMPREF1058_RS06800 0.27 -1.8
394,397 + HMPREF1058_RS06800 0.27 +4.2
394,526 + HMPREF1058_RS06800 0.34 +3.8
394,574 - HMPREF1058_RS06800 0.37 +0.0
394,603 + HMPREF1058_RS06800 0.39 +4.0
394,603 + HMPREF1058_RS06800 0.39 +2.1
394,604 - HMPREF1058_RS06800 0.39 -1.0
394,716 + HMPREF1058_RS06800 0.45 +1.5
394,728 - HMPREF1058_RS06800 0.45 -1.2
394,764 + HMPREF1058_RS06800 0.47 +2.8
394,765 - HMPREF1058_RS06800 0.47 -0.8
394,856 - HMPREF1058_RS06800 0.52 -1.0
394,863 + HMPREF1058_RS06800 0.53 +4.2
395,026 + HMPREF1058_RS06800 0.61 +3.3
395,027 - HMPREF1058_RS06800 0.61 -0.4
395,053 + HMPREF1058_RS06800 0.63 +1.6
395,054 - HMPREF1058_RS06800 0.63 +0.5
395,054 - HMPREF1058_RS06800 0.63 +1.6
395,055 + HMPREF1058_RS06800 0.63 -1.7
395,055 + +1.5
395,055 + HMPREF1058_RS06800 0.63 +1.9
395,055 + HMPREF1058_RS06800 0.63 +4.1
395,056 - HMPREF1058_RS06800 0.63 +0.1
395,056 - HMPREF1058_RS06800 0.63 -0.3
395,056 - HMPREF1058_RS06800 0.63 +0.1
395,056 - HMPREF1058_RS06800 0.63 +2.0
395,058 - HMPREF1058_RS06800 0.63 -1.5
395,058 - HMPREF1058_RS06800 0.63 +0.8
395,117 - HMPREF1058_RS06800 0.66 -0.0
395,200 + HMPREF1058_RS06800 0.71 +3.1
395,202 + HMPREF1058_RS06800 0.71 +2.2
395,202 + HMPREF1058_RS06800 0.71 +2.7
395,203 - HMPREF1058_RS06800 0.71 -1.4
395,212 - HMPREF1058_RS06800 0.71 +2.2
395,212 - HMPREF1058_RS06800 0.71 +1.9
395,265 + HMPREF1058_RS06800 0.74 +2.6
395,302 - HMPREF1058_RS06800 0.76 -2.0
395,302 - HMPREF1058_RS06800 0.76 -2.4
395,316 - HMPREF1058_RS06800 0.77 -1.6
395,452 - HMPREF1058_RS06800 0.84 +0.2
395,455 - HMPREF1058_RS06800 0.85 -0.8
395,455 - HMPREF1058_RS06800 0.85 -0.9
395,477 + HMPREF1058_RS06800 0.86 +3.5
395,478 - HMPREF1058_RS06800 0.86 -0.1
395,484 + HMPREF1058_RS06800 0.86 +1.0
395,535 + HMPREF1058_RS06800 0.89 +3.1
395,566 - +2.1
395,574 - +0.9
395,575 + +2.7
395,576 - -0.5
395,586 - -1.1
395,590 + +1.4
395,591 - +0.2
395,656 - +0.5
395,668 + +2.0
395,671 + +1.6
395,672 - +1.3
395,672 - +0.0
395,722 + +2.2
395,723 - -0.6
395,741 - +1.0
395,743 + +1.5
395,744 - +0.6
395,746 + +2.2
395,764 - -0.4
395,818 - -0.1
395,838 - -1.3
395,845 + +0.3
395,920 - HMPREF1058_RS06795 0.10 +0.7
395,931 - HMPREF1058_RS06795 0.13 +0.5
396,038 + HMPREF1058_RS06795 0.43 +1.3
396,038 + HMPREF1058_RS06795 0.43 +0.6
396,111 - HMPREF1058_RS06795 0.64 +0.9
396,175 + HMPREF1058_RS06795 0.82 -1.8
396,175 + HMPREF1058_RS06795 0.82 +0.3
396,176 - HMPREF1058_RS06795 0.82 +0.6
396,176 - HMPREF1058_RS06795 0.82 +1.0
396,243 - +1.0
396,346 - -2.1
396,348 - +0.7
396,546 - HMPREF1058_RS06790 0.25 -0.2
396,683 + HMPREF1058_RS06790 0.36 -0.0
396,698 + HMPREF1058_RS06790 0.38 -1.6
396,699 - HMPREF1058_RS06790 0.38 -0.1
396,699 - HMPREF1058_RS06790 0.38 -1.1
396,699 - HMPREF1058_RS06790 0.38 +0.8
396,708 + HMPREF1058_RS06790 0.38 -1.5
396,709 - HMPREF1058_RS06790 0.39 +0.6

Or see this region's nucleotide sequence