Experiment: L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01235 and HMPREF1058_RS01230 are separated by 272 nucleotides HMPREF1058_RS01230 and HMPREF1058_RS01225 are separated by 158 nucleotides HMPREF1058_RS01225 and HMPREF1058_RS01220 are separated by 0 nucleotides
HMPREF1058_RS01235: HMPREF1058_RS01235 - phosphoserine phosphatase SerB, at 173,574 to 174,806
_RS01235
HMPREF1058_RS01230: HMPREF1058_RS01230 - redoxin domain-containing protein, at 175,079 to 175,573
_RS01230
HMPREF1058_RS01225: HMPREF1058_RS01225 - HAD family phosphatase, at 175,732 to 176,352
_RS01225
HMPREF1058_RS01220: HMPREF1058_RS01220 - YjgP/YjgQ family permease, at 176,353 to 177,525
_RS01220
Position (kb) 175
176 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 174.183 kb on - strand, within HMPREF1058_RS01235 at 174.196 kb on - strand, within HMPREF1058_RS01235 at 174.248 kb on + strand, within HMPREF1058_RS01235 at 174.248 kb on + strand, within HMPREF1058_RS01235 at 174.248 kb on + strand, within HMPREF1058_RS01235 at 174.357 kb on - strand, within HMPREF1058_RS01235 at 174.366 kb on + strand, within HMPREF1058_RS01235 at 174.405 kb on - strand, within HMPREF1058_RS01235 at 174.447 kb on + strand, within HMPREF1058_RS01235 at 174.447 kb on + strand at 174.448 kb on - strand, within HMPREF1058_RS01235 at 174.604 kb on - strand, within HMPREF1058_RS01235 at 174.795 kb on - strand at 174.797 kb on + strand at 174.807 kb on - strand at 174.825 kb on - strand at 174.843 kb on + strand at 174.945 kb on - strand at 175.059 kb on - strand at 175.065 kb on + strand at 175.066 kb on - strand at 175.077 kb on - strand at 175.077 kb on - strand at 175.114 kb on - strand at 175.201 kb on + strand, within HMPREF1058_RS01230 at 175.202 kb on - strand, within HMPREF1058_RS01230 at 175.204 kb on + strand, within HMPREF1058_RS01230 at 175.205 kb on - strand, within HMPREF1058_RS01230 at 175.249 kb on + strand, within HMPREF1058_RS01230 at 175.253 kb on + strand, within HMPREF1058_RS01230 at 175.253 kb on + strand, within HMPREF1058_RS01230 at 175.254 kb on - strand, within HMPREF1058_RS01230 at 175.254 kb on - strand, within HMPREF1058_RS01230 at 175.254 kb on - strand, within HMPREF1058_RS01230 at 175.258 kb on - strand, within HMPREF1058_RS01230 at 175.264 kb on - strand, within HMPREF1058_RS01230 at 175.280 kb on + strand, within HMPREF1058_RS01230 at 175.345 kb on - strand at 175.373 kb on + strand, within HMPREF1058_RS01230 at 175.373 kb on + strand, within HMPREF1058_RS01230 at 175.424 kb on - strand, within HMPREF1058_RS01230 at 175.461 kb on + strand, within HMPREF1058_RS01230 at 175.461 kb on + strand, within HMPREF1058_RS01230 at 175.472 kb on + strand, within HMPREF1058_RS01230 at 175.653 kb on + strand at 175.654 kb on - strand at 175.655 kb on + strand at 175.673 kb on + strand at 175.673 kb on + strand at 175.674 kb on - strand at 175.674 kb on - strand at 175.723 kb on - strand at 175.744 kb on - strand at 175.749 kb on + strand at 175.844 kb on + strand, within HMPREF1058_RS01225 at 175.845 kb on - strand, within HMPREF1058_RS01225 at 175.855 kb on + strand, within HMPREF1058_RS01225 at 175.954 kb on + strand, within HMPREF1058_RS01225 at 176.007 kb on + strand, within HMPREF1058_RS01225 at 176.048 kb on + strand, within HMPREF1058_RS01225 at 176.049 kb on - strand, within HMPREF1058_RS01225 at 176.049 kb on - strand, within HMPREF1058_RS01225 at 176.049 kb on - strand, within HMPREF1058_RS01225 at 176.050 kb on + strand, within HMPREF1058_RS01225 at 176.050 kb on + strand, within HMPREF1058_RS01225 at 176.050 kb on + strand, within HMPREF1058_RS01225 at 176.051 kb on - strand, within HMPREF1058_RS01225 at 176.052 kb on + strand, within HMPREF1058_RS01225 at 176.052 kb on + strand, within HMPREF1058_RS01225 at 176.052 kb on + strand, within HMPREF1058_RS01225 at 176.053 kb on - strand, within HMPREF1058_RS01225 at 176.054 kb on + strand, within HMPREF1058_RS01225 at 176.055 kb on - strand, within HMPREF1058_RS01225 at 176.150 kb on - strand, within HMPREF1058_RS01225 at 176.150 kb on - strand, within HMPREF1058_RS01225 at 176.197 kb on - strand, within HMPREF1058_RS01225 at 176.200 kb on + strand, within HMPREF1058_RS01225 at 176.202 kb on + strand, within HMPREF1058_RS01225 at 176.272 kb on - strand, within HMPREF1058_RS01225 at 176.348 kb on + strand at 176.355 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen remove 174,183 - HMPREF1058_RS01235 0.49 -1.3 174,196 - HMPREF1058_RS01235 0.50 +0.6 174,248 + HMPREF1058_RS01235 0.55 +0.6 174,248 + HMPREF1058_RS01235 0.55 -0.8 174,248 + HMPREF1058_RS01235 0.55 +0.2 174,357 - HMPREF1058_RS01235 0.64 -2.6 174,366 + HMPREF1058_RS01235 0.64 -3.8 174,405 - HMPREF1058_RS01235 0.67 -2.9 174,447 + HMPREF1058_RS01235 0.71 -1.7 174,447 + -1.5 174,448 - HMPREF1058_RS01235 0.71 -1.6 174,604 - HMPREF1058_RS01235 0.84 -1.9 174,795 - -2.7 174,797 + -0.4 174,807 - -1.7 174,825 - -0.4 174,843 + -0.8 174,945 - +1.1 175,059 - +0.6 175,065 + -0.6 175,066 - +0.6 175,077 - +0.8 175,077 - +1.2 175,114 - +1.0 175,201 + HMPREF1058_RS01230 0.25 +1.4 175,202 - HMPREF1058_RS01230 0.25 +2.4 175,204 + HMPREF1058_RS01230 0.25 +1.7 175,205 - HMPREF1058_RS01230 0.25 +1.8 175,249 + HMPREF1058_RS01230 0.34 +2.1 175,253 + HMPREF1058_RS01230 0.35 +0.3 175,253 + HMPREF1058_RS01230 0.35 +1.2 175,254 - HMPREF1058_RS01230 0.35 +1.6 175,254 - HMPREF1058_RS01230 0.35 +2.5 175,254 - HMPREF1058_RS01230 0.35 +0.9 175,258 - HMPREF1058_RS01230 0.36 +1.3 175,264 - HMPREF1058_RS01230 0.37 +1.4 175,280 + HMPREF1058_RS01230 0.41 +0.2 175,345 - +1.6 175,373 + HMPREF1058_RS01230 0.59 +1.4 175,373 + HMPREF1058_RS01230 0.59 +1.7 175,424 - HMPREF1058_RS01230 0.70 +1.5 175,461 + HMPREF1058_RS01230 0.77 +0.9 175,461 + HMPREF1058_RS01230 0.77 +2.1 175,472 + HMPREF1058_RS01230 0.79 +0.8 175,653 + +1.8 175,654 - +1.2 175,655 + -1.5 175,673 + -1.9 175,673 + +0.2 175,674 - -1.1 175,674 - -0.2 175,723 - -2.2 175,744 - -0.4 175,749 + -1.8 175,844 + HMPREF1058_RS01225 0.18 -1.8 175,845 - HMPREF1058_RS01225 0.18 +0.5 175,855 + HMPREF1058_RS01225 0.20 -0.6 175,954 + HMPREF1058_RS01225 0.36 +0.7 176,007 + HMPREF1058_RS01225 0.44 -1.1 176,048 + HMPREF1058_RS01225 0.51 -1.7 176,049 - HMPREF1058_RS01225 0.51 +1.6 176,049 - HMPREF1058_RS01225 0.51 +1.0 176,049 - HMPREF1058_RS01225 0.51 -0.1 176,050 + HMPREF1058_RS01225 0.51 +0.1 176,050 + HMPREF1058_RS01225 0.51 +0.3 176,050 + HMPREF1058_RS01225 0.51 -0.0 176,051 - HMPREF1058_RS01225 0.51 -0.4 176,052 + HMPREF1058_RS01225 0.52 -1.0 176,052 + HMPREF1058_RS01225 0.52 +0.0 176,052 + HMPREF1058_RS01225 0.52 +0.2 176,053 - HMPREF1058_RS01225 0.52 +0.2 176,054 + HMPREF1058_RS01225 0.52 -0.3 176,055 - HMPREF1058_RS01225 0.52 -1.8 176,150 - HMPREF1058_RS01225 0.67 -0.4 176,150 - HMPREF1058_RS01225 0.67 +4.8 176,197 - HMPREF1058_RS01225 0.75 +1.2 176,200 + HMPREF1058_RS01225 0.75 -0.7 176,202 + HMPREF1058_RS01225 0.76 +0.4 176,272 - HMPREF1058_RS01225 0.87 +0.4 176,348 + +1.2 176,355 - -0.5
Or see this region's nucleotide sequence