Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14200

Experiment: L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS14205 and HMPREF1058_RS14200 are separated by 87 nucleotidesHMPREF1058_RS14200 and HMPREF1058_RS14195 are separated by 2 nucleotides HMPREF1058_RS14205: HMPREF1058_RS14205 - 6-phosphofructokinase, at 1,256,632 to 1,257,612 _RS14205 HMPREF1058_RS14200: HMPREF1058_RS14200 - methylmalonyl Co-A mutase-associated GTPase MeaB, at 1,257,700 to 1,258,797 _RS14200 HMPREF1058_RS14195: HMPREF1058_RS14195 - DUF1573 domain-containing protein, at 1,258,800 to 1,259,876 _RS14195 Position (kb) 1257 1258 1259Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1256.726 kb on - strandat 1256.726 kb on - strandat 1256.741 kb on + strand, within HMPREF1058_RS14205at 1256.755 kb on - strand, within HMPREF1058_RS14205at 1256.811 kb on + strand, within HMPREF1058_RS14205at 1256.823 kb on - strand, within HMPREF1058_RS14205at 1256.970 kb on + strand, within HMPREF1058_RS14205at 1256.970 kb on + strand, within HMPREF1058_RS14205at 1256.971 kb on - strand, within HMPREF1058_RS14205at 1257.211 kb on - strand, within HMPREF1058_RS14205at 1257.211 kb on - strand, within HMPREF1058_RS14205at 1257.211 kb on - strand, within HMPREF1058_RS14205at 1257.300 kb on - strand, within HMPREF1058_RS14205at 1257.370 kb on + strand, within HMPREF1058_RS14205at 1257.371 kb on - strand, within HMPREF1058_RS14205at 1257.401 kb on + strand, within HMPREF1058_RS14205at 1257.401 kb on + strand, within HMPREF1058_RS14205at 1257.402 kb on - strand, within HMPREF1058_RS14205at 1257.492 kb on + strand, within HMPREF1058_RS14205at 1257.493 kb on - strand, within HMPREF1058_RS14205at 1257.493 kb on - strand, within HMPREF1058_RS14205at 1257.497 kb on + strand, within HMPREF1058_RS14205at 1257.568 kb on - strandat 1257.611 kb on - strandat 1257.662 kb on - strandat 1257.799 kb on - strandat 1257.814 kb on + strand, within HMPREF1058_RS14200at 1257.816 kb on + strand, within HMPREF1058_RS14200at 1257.816 kb on + strand, within HMPREF1058_RS14200at 1257.816 kb on + strand, within HMPREF1058_RS14200at 1257.822 kb on - strand, within HMPREF1058_RS14200at 1257.857 kb on + strand, within HMPREF1058_RS14200at 1257.857 kb on + strand, within HMPREF1058_RS14200at 1257.857 kb on + strand, within HMPREF1058_RS14200at 1257.858 kb on - strand, within HMPREF1058_RS14200at 1257.858 kb on - strand, within HMPREF1058_RS14200at 1257.867 kb on - strand, within HMPREF1058_RS14200at 1257.926 kb on + strand, within HMPREF1058_RS14200at 1257.927 kb on - strand, within HMPREF1058_RS14200at 1257.933 kb on - strand, within HMPREF1058_RS14200at 1257.955 kb on - strand, within HMPREF1058_RS14200at 1257.968 kb on + strand, within HMPREF1058_RS14200at 1257.969 kb on - strand, within HMPREF1058_RS14200at 1257.980 kb on + strand, within HMPREF1058_RS14200at 1257.980 kb on + strand, within HMPREF1058_RS14200at 1257.989 kb on - strand, within HMPREF1058_RS14200at 1257.989 kb on - strand, within HMPREF1058_RS14200at 1258.126 kb on - strand, within HMPREF1058_RS14200at 1258.194 kb on + strand, within HMPREF1058_RS14200at 1258.274 kb on - strand, within HMPREF1058_RS14200at 1258.413 kb on + strand, within HMPREF1058_RS14200at 1258.426 kb on - strand, within HMPREF1058_RS14200at 1258.426 kb on - strand, within HMPREF1058_RS14200at 1258.430 kb on - strand, within HMPREF1058_RS14200at 1258.482 kb on + strand, within HMPREF1058_RS14200at 1258.483 kb on - strand, within HMPREF1058_RS14200at 1258.488 kb on + strand, within HMPREF1058_RS14200at 1258.489 kb on - strand, within HMPREF1058_RS14200at 1258.489 kb on - strand, within HMPREF1058_RS14200at 1258.578 kb on + strand, within HMPREF1058_RS14200at 1258.598 kb on - strand, within HMPREF1058_RS14200at 1258.615 kb on - strand, within HMPREF1058_RS14200at 1258.660 kb on + strand, within HMPREF1058_RS14200at 1258.660 kb on + strand, within HMPREF1058_RS14200at 1258.660 kb on + strand, within HMPREF1058_RS14200at 1258.661 kb on - strand, within HMPREF1058_RS14200at 1258.664 kb on + strand, within HMPREF1058_RS14200at 1258.705 kb on + strandat 1258.728 kb on + strandat 1258.743 kb on + strandat 1258.770 kb on - strandat 1258.815 kb on + strandat 1258.827 kb on + strandat 1258.829 kb on + strandat 1258.830 kb on - strandat 1258.830 kb on - strandat 1258.830 kb on - strandat 1258.833 kb on + strandat 1258.847 kb on + strandat 1259.045 kb on + strand, within HMPREF1058_RS14195at 1259.197 kb on - strand, within HMPREF1058_RS14195at 1259.366 kb on + strand, within HMPREF1058_RS14195at 1259.367 kb on - strand, within HMPREF1058_RS14195at 1259.367 kb on - strand, within HMPREF1058_RS14195at 1259.369 kb on - strand, within HMPREF1058_RS14195at 1259.370 kb on + strand, within HMPREF1058_RS14195at 1259.370 kb on + strand, within HMPREF1058_RS14195at 1259.370 kb on + strand, within HMPREF1058_RS14195at 1259.370 kb on + strand, within HMPREF1058_RS14195at 1259.371 kb on - strand, within HMPREF1058_RS14195at 1259.376 kb on - strand, within HMPREF1058_RS14195at 1259.384 kb on + strand, within HMPREF1058_RS14195at 1259.505 kb on - strand, within HMPREF1058_RS14195at 1259.539 kb on + strand, within HMPREF1058_RS14195at 1259.544 kb on - strand, within HMPREF1058_RS14195at 1259.544 kb on - strand, within HMPREF1058_RS14195at 1259.615 kb on + strand, within HMPREF1058_RS14195at 1259.704 kb on - strand, within HMPREF1058_RS14195at 1259.704 kb on - strand, within HMPREF1058_RS14195

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen
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1,256,726 - -0.6
1,256,726 - -0.8
1,256,741 + HMPREF1058_RS14205 0.11 -1.2
1,256,755 - HMPREF1058_RS14205 0.13 -2.3
1,256,811 + HMPREF1058_RS14205 0.18 -1.3
1,256,823 - HMPREF1058_RS14205 0.19 -1.1
1,256,970 + HMPREF1058_RS14205 0.34 -1.4
1,256,970 + HMPREF1058_RS14205 0.34 -0.6
1,256,971 - HMPREF1058_RS14205 0.35 -1.4
1,257,211 - HMPREF1058_RS14205 0.59 -1.3
1,257,211 - HMPREF1058_RS14205 0.59 -1.3
1,257,211 - HMPREF1058_RS14205 0.59 -2.6
1,257,300 - HMPREF1058_RS14205 0.68 -1.2
1,257,370 + HMPREF1058_RS14205 0.75 -0.8
1,257,371 - HMPREF1058_RS14205 0.75 -1.0
1,257,401 + HMPREF1058_RS14205 0.78 +0.5
1,257,401 + HMPREF1058_RS14205 0.78 +0.1
1,257,402 - HMPREF1058_RS14205 0.78 -1.1
1,257,492 + HMPREF1058_RS14205 0.88 -1.0
1,257,493 - HMPREF1058_RS14205 0.88 +2.2
1,257,493 - HMPREF1058_RS14205 0.88 -2.6
1,257,497 + HMPREF1058_RS14205 0.88 -1.8
1,257,568 - -1.3
1,257,611 - -1.5
1,257,662 - -1.0
1,257,799 - -2.4
1,257,814 + HMPREF1058_RS14200 0.10 -3.4
1,257,816 + HMPREF1058_RS14200 0.11 -1.8
1,257,816 + HMPREF1058_RS14200 0.11 -2.8
1,257,816 + HMPREF1058_RS14200 0.11 -1.9
1,257,822 - HMPREF1058_RS14200 0.11 -2.0
1,257,857 + HMPREF1058_RS14200 0.14 -1.1
1,257,857 + HMPREF1058_RS14200 0.14 -1.6
1,257,857 + HMPREF1058_RS14200 0.14 -0.8
1,257,858 - HMPREF1058_RS14200 0.14 -1.4
1,257,858 - HMPREF1058_RS14200 0.14 -1.4
1,257,867 - HMPREF1058_RS14200 0.15 -1.0
1,257,926 + HMPREF1058_RS14200 0.21 -1.1
1,257,927 - HMPREF1058_RS14200 0.21 -1.2
1,257,933 - HMPREF1058_RS14200 0.21 -2.9
1,257,955 - HMPREF1058_RS14200 0.23 -3.0
1,257,968 + HMPREF1058_RS14200 0.24 -0.8
1,257,969 - HMPREF1058_RS14200 0.24 -2.2
1,257,980 + HMPREF1058_RS14200 0.26 -2.0
1,257,980 + HMPREF1058_RS14200 0.26 -2.9
1,257,989 - HMPREF1058_RS14200 0.26 -2.0
1,257,989 - HMPREF1058_RS14200 0.26 -2.7
1,258,126 - HMPREF1058_RS14200 0.39 -1.7
1,258,194 + HMPREF1058_RS14200 0.45 -2.3
1,258,274 - HMPREF1058_RS14200 0.52 -2.5
1,258,413 + HMPREF1058_RS14200 0.65 -1.7
1,258,426 - HMPREF1058_RS14200 0.66 -0.3
1,258,426 - HMPREF1058_RS14200 0.66 -2.3
1,258,430 - HMPREF1058_RS14200 0.66 -1.8
1,258,482 + HMPREF1058_RS14200 0.71 -2.0
1,258,483 - HMPREF1058_RS14200 0.71 -3.8
1,258,488 + HMPREF1058_RS14200 0.72 -0.6
1,258,489 - HMPREF1058_RS14200 0.72 -2.4
1,258,489 - HMPREF1058_RS14200 0.72 -1.2
1,258,578 + HMPREF1058_RS14200 0.80 -0.3
1,258,598 - HMPREF1058_RS14200 0.82 -2.8
1,258,615 - HMPREF1058_RS14200 0.83 -2.2
1,258,660 + HMPREF1058_RS14200 0.87 -0.8
1,258,660 + HMPREF1058_RS14200 0.87 -2.8
1,258,660 + HMPREF1058_RS14200 0.87 -2.1
1,258,661 - HMPREF1058_RS14200 0.88 -1.8
1,258,664 + HMPREF1058_RS14200 0.88 -1.1
1,258,705 + -2.9
1,258,728 + -1.3
1,258,743 + -2.4
1,258,770 - -1.0
1,258,815 + -1.8
1,258,827 + -0.6
1,258,829 + -2.7
1,258,830 - -0.3
1,258,830 - -0.2
1,258,830 - +0.5
1,258,833 + -0.1
1,258,847 + +0.0
1,259,045 + HMPREF1058_RS14195 0.23 -2.2
1,259,197 - HMPREF1058_RS14195 0.37 +0.4
1,259,366 + HMPREF1058_RS14195 0.53 -4.2
1,259,367 - HMPREF1058_RS14195 0.53 +0.0
1,259,367 - HMPREF1058_RS14195 0.53 +0.4
1,259,369 - HMPREF1058_RS14195 0.53 +0.9
1,259,370 + HMPREF1058_RS14195 0.53 -2.0
1,259,370 + HMPREF1058_RS14195 0.53 -1.1
1,259,370 + HMPREF1058_RS14195 0.53 -2.1
1,259,370 + HMPREF1058_RS14195 0.53 -2.2
1,259,371 - HMPREF1058_RS14195 0.53 -0.6
1,259,376 - HMPREF1058_RS14195 0.53 -0.1
1,259,384 + HMPREF1058_RS14195 0.54 +0.2
1,259,505 - HMPREF1058_RS14195 0.65 -0.9
1,259,539 + HMPREF1058_RS14195 0.69 -0.8
1,259,544 - HMPREF1058_RS14195 0.69 -0.0
1,259,544 - HMPREF1058_RS14195 0.69 +1.4
1,259,615 + HMPREF1058_RS14195 0.76 -0.6
1,259,704 - HMPREF1058_RS14195 0.84 +1.3
1,259,704 - HMPREF1058_RS14195 0.84 +0.2

Or see this region's nucleotide sequence