Experiment: L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS13970 and HMPREF1058_RS13965 are separated by 4 nucleotides HMPREF1058_RS13965 and HMPREF1058_RS13960 are separated by 52 nucleotides HMPREF1058_RS13960 and HMPREF1058_RS13955 overlap by 17 nucleotides
HMPREF1058_RS13970: HMPREF1058_RS13970 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 1,316,963 to 1,318,192
_RS13970
HMPREF1058_RS13965: HMPREF1058_RS13965 - hypothetical protein, at 1,318,197 to 1,318,616
_RS13965
HMPREF1058_RS13960: HMPREF1058_RS13960 - metal ABC transporter permease, at 1,318,669 to 1,319,520
_RS13960
HMPREF1058_RS13955: HMPREF1058_RS13955 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 1,319,504 to 1,319,932
_RS13955
Position (kb) 1318
1319 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1317.403 kb on + strand, within HMPREF1058_RS13970 at 1317.414 kb on + strand, within HMPREF1058_RS13970 at 1317.430 kb on + strand, within HMPREF1058_RS13970 at 1317.575 kb on + strand, within HMPREF1058_RS13970 at 1317.623 kb on + strand, within HMPREF1058_RS13970 at 1317.954 kb on + strand, within HMPREF1058_RS13970 at 1317.959 kb on + strand, within HMPREF1058_RS13970 at 1317.963 kb on + strand, within HMPREF1058_RS13970 at 1317.985 kb on + strand, within HMPREF1058_RS13970 at 1318.142 kb on + strand at 1318.180 kb on - strand at 1318.188 kb on + strand at 1318.190 kb on + strand at 1318.258 kb on + strand, within HMPREF1058_RS13965 at 1318.259 kb on - strand, within HMPREF1058_RS13965 at 1318.408 kb on - strand, within HMPREF1058_RS13965 at 1318.458 kb on - strand, within HMPREF1058_RS13965 at 1318.553 kb on - strand, within HMPREF1058_RS13965 at 1318.595 kb on - strand at 1318.675 kb on - strand at 1318.676 kb on + strand at 1318.695 kb on + strand at 1318.696 kb on - strand at 1318.696 kb on - strand at 1318.763 kb on - strand, within HMPREF1058_RS13960 at 1318.763 kb on - strand, within HMPREF1058_RS13960 at 1318.840 kb on + strand, within HMPREF1058_RS13960 at 1318.860 kb on - strand, within HMPREF1058_RS13960 at 1318.926 kb on + strand, within HMPREF1058_RS13960 at 1318.977 kb on - strand, within HMPREF1058_RS13960 at 1318.977 kb on - strand, within HMPREF1058_RS13960 at 1318.980 kb on + strand, within HMPREF1058_RS13960 at 1319.105 kb on + strand, within HMPREF1058_RS13960 at 1319.106 kb on - strand, within HMPREF1058_RS13960 at 1319.176 kb on - strand, within HMPREF1058_RS13960 at 1319.253 kb on + strand, within HMPREF1058_RS13960 at 1319.254 kb on - strand, within HMPREF1058_RS13960 at 1319.255 kb on + strand, within HMPREF1058_RS13960 at 1319.256 kb on - strand, within HMPREF1058_RS13960 at 1319.258 kb on + strand, within HMPREF1058_RS13960 at 1319.259 kb on - strand, within HMPREF1058_RS13960 at 1319.313 kb on + strand, within HMPREF1058_RS13960 at 1319.394 kb on - strand, within HMPREF1058_RS13960 at 1319.442 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen remove 1,317,403 + HMPREF1058_RS13970 0.36 -3.9 1,317,414 + HMPREF1058_RS13970 0.37 -1.4 1,317,430 + HMPREF1058_RS13970 0.38 -2.4 1,317,575 + HMPREF1058_RS13970 0.50 -2.4 1,317,623 + HMPREF1058_RS13970 0.54 -2.2 1,317,954 + HMPREF1058_RS13970 0.81 -1.9 1,317,959 + HMPREF1058_RS13970 0.81 -1.2 1,317,963 + HMPREF1058_RS13970 0.81 -3.1 1,317,985 + HMPREF1058_RS13970 0.83 -0.5 1,318,142 + -1.5 1,318,180 - -0.9 1,318,188 + +3.0 1,318,190 + +0.7 1,318,258 + HMPREF1058_RS13965 0.15 -1.0 1,318,259 - HMPREF1058_RS13965 0.15 -0.4 1,318,408 - HMPREF1058_RS13965 0.50 -0.5 1,318,458 - HMPREF1058_RS13965 0.62 -1.2 1,318,553 - HMPREF1058_RS13965 0.85 -1.2 1,318,595 - -0.0 1,318,675 - +0.2 1,318,676 + +0.8 1,318,695 + -0.3 1,318,696 - +0.0 1,318,696 - +0.1 1,318,763 - HMPREF1058_RS13960 0.11 +0.1 1,318,763 - HMPREF1058_RS13960 0.11 +0.5 1,318,840 + HMPREF1058_RS13960 0.20 +0.2 1,318,860 - HMPREF1058_RS13960 0.22 -0.2 1,318,926 + HMPREF1058_RS13960 0.30 +0.5 1,318,977 - HMPREF1058_RS13960 0.36 -1.0 1,318,977 - HMPREF1058_RS13960 0.36 +1.1 1,318,980 + HMPREF1058_RS13960 0.37 +0.1 1,319,105 + HMPREF1058_RS13960 0.51 +0.0 1,319,106 - HMPREF1058_RS13960 0.51 +0.6 1,319,176 - HMPREF1058_RS13960 0.60 -0.1 1,319,253 + HMPREF1058_RS13960 0.69 -1.2 1,319,254 - HMPREF1058_RS13960 0.69 -1.7 1,319,255 + HMPREF1058_RS13960 0.69 -0.5 1,319,256 - HMPREF1058_RS13960 0.69 -0.9 1,319,258 + HMPREF1058_RS13960 0.69 -0.2 1,319,259 - HMPREF1058_RS13960 0.69 -0.5 1,319,313 + HMPREF1058_RS13960 0.76 -0.5 1,319,394 - HMPREF1058_RS13960 0.85 -0.5 1,319,442 + -0.1
Or see this region's nucleotide sequence