Experiment: L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09885 and HMPREF1058_RS0119685 overlap by 4 nucleotides HMPREF1058_RS0119685 and HMPREF1058_RS09880 are separated by 10 nucleotides HMPREF1058_RS09880 and HMPREF1058_RS09875 are separated by 201 nucleotides HMPREF1058_RS09875 and HMPREF1058_RS09870 overlap by 4 nucleotides
HMPREF1058_RS09885: HMPREF1058_RS09885 - TraG family conjugative transposon ATPase, at 765,390 to 767,894
_RS09885
HMPREF1058_RS0119685: HMPREF1058_RS0119685 - DUF4133 domain-containing protein, at 767,891 to 768,223
_RS0119685
HMPREF1058_RS09880: HMPREF1058_RS09880 - DUF4134 domain-containing protein, at 768,234 to 768,545
_RS09880
HMPREF1058_RS09875: HMPREF1058_RS09875 - hypothetical protein, at 768,747 to 769,466
_RS09875
HMPREF1058_RS09870: HMPREF1058_RS09870 - DUF3408 domain-containing protein, at 769,463 to 769,705
_RS09870
Position (kb) 768
769 Strain fitness (log2 ratio) -2
-1
0
1 at 767.560 kb on + strand, within HMPREF1058_RS09885 at 768.035 kb on + strand, within HMPREF1058_RS0119685 at 768.223 kb on + strand at 768.223 kb on + strand at 768.223 kb on + strand at 768.418 kb on + strand, within HMPREF1058_RS09880 at 768.501 kb on - strand, within HMPREF1058_RS09880 at 768.750 kb on + strand at 769.466 kb on + strand at 769.466 kb on + strand at 769.466 kb on + strand at 769.495 kb on + strand, within HMPREF1058_RS09870 at 769.495 kb on + strand, within HMPREF1058_RS09870 at 769.495 kb on + strand, within HMPREF1058_RS09870 at 769.495 kb on + strand, within HMPREF1058_RS09870
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen remove 767,560 + HMPREF1058_RS09885 0.87 -0.4 768,035 + HMPREF1058_RS0119685 0.43 -1.9 768,223 + -0.2 768,223 + +0.4 768,223 + +0.0 768,418 + HMPREF1058_RS09880 0.59 +0.3 768,501 - HMPREF1058_RS09880 0.86 +0.2 768,750 + +0.4 769,466 + +0.5 769,466 + -1.3 769,466 + +0.4 769,495 + HMPREF1058_RS09870 0.13 -0.1 769,495 + HMPREF1058_RS09870 0.13 -0.3 769,495 + HMPREF1058_RS09870 0.13 -0.8 769,495 + HMPREF1058_RS09870 0.13 +0.4
Or see this region's nucleotide sequence