Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17895

Experiment: L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS17905 and HMPREF1058_RS17900 are separated by 20 nucleotidesHMPREF1058_RS17900 and HMPREF1058_RS17895 are separated by 104 nucleotidesHMPREF1058_RS17895 and HMPREF1058_RS17890 are separated by 119 nucleotides HMPREF1058_RS17905: HMPREF1058_RS17905 - GNAT family N-acetyltransferase, at 303,688 to 304,185 _RS17905 HMPREF1058_RS17900: HMPREF1058_RS17900 - DNA alkylation repair protein, at 304,206 to 304,922 _RS17900 HMPREF1058_RS17895: HMPREF1058_RS17895 - hypothetical protein, at 305,027 to 306,277 _RS17895 HMPREF1058_RS17890: HMPREF1058_RS17890 - DUF4301 family protein, at 306,397 to 307,914 _RS17890 Position (kb) 305 306 307Strain fitness (log2 ratio) -2 -1 0 1 2at 304.136 kb on + strandat 304.152 kb on + strandat 304.153 kb on - strandat 304.153 kb on - strandat 304.153 kb on - strandat 304.164 kb on + strandat 304.189 kb on + strandat 304.238 kb on - strandat 304.383 kb on + strand, within HMPREF1058_RS17900at 304.384 kb on - strand, within HMPREF1058_RS17900at 304.401 kb on - strand, within HMPREF1058_RS17900at 304.405 kb on - strand, within HMPREF1058_RS17900at 304.407 kb on + strand, within HMPREF1058_RS17900at 304.409 kb on + strand, within HMPREF1058_RS17900at 304.421 kb on + strand, within HMPREF1058_RS17900at 304.421 kb on + strand, within HMPREF1058_RS17900at 304.421 kb on + strand, within HMPREF1058_RS17900at 304.422 kb on - strand, within HMPREF1058_RS17900at 304.422 kb on - strand, within HMPREF1058_RS17900at 304.426 kb on + strand, within HMPREF1058_RS17900at 304.439 kb on - strand, within HMPREF1058_RS17900at 304.442 kb on - strand, within HMPREF1058_RS17900at 304.474 kb on - strand, within HMPREF1058_RS17900at 304.497 kb on - strand, within HMPREF1058_RS17900at 304.623 kb on + strand, within HMPREF1058_RS17900at 304.645 kb on + strand, within HMPREF1058_RS17900at 304.677 kb on + strand, within HMPREF1058_RS17900at 304.677 kb on + strand, within HMPREF1058_RS17900at 304.677 kb on + strand, within HMPREF1058_RS17900at 304.680 kb on - strand, within HMPREF1058_RS17900at 304.681 kb on + strand, within HMPREF1058_RS17900at 304.681 kb on + strand, within HMPREF1058_RS17900at 304.726 kb on - strand, within HMPREF1058_RS17900at 304.729 kb on - strand, within HMPREF1058_RS17900at 304.744 kb on + strand, within HMPREF1058_RS17900at 304.745 kb on - strand, within HMPREF1058_RS17900at 304.763 kb on - strand, within HMPREF1058_RS17900at 304.767 kb on + strand, within HMPREF1058_RS17900at 304.768 kb on - strand, within HMPREF1058_RS17900at 304.827 kb on - strand, within HMPREF1058_RS17900at 304.855 kb on + strandat 304.920 kb on + strandat 304.921 kb on - strandat 305.009 kb on - strandat 305.011 kb on + strandat 305.084 kb on + strandat 305.084 kb on + strandat 305.108 kb on + strandat 305.257 kb on + strand, within HMPREF1058_RS17895at 305.257 kb on + strand, within HMPREF1058_RS17895at 305.257 kb on + strand, within HMPREF1058_RS17895at 305.257 kb on + strand, within HMPREF1058_RS17895at 305.257 kb on + strand, within HMPREF1058_RS17895at 305.258 kb on - strand, within HMPREF1058_RS17895at 305.258 kb on - strand, within HMPREF1058_RS17895at 305.259 kb on + strand, within HMPREF1058_RS17895at 305.259 kb on + strand, within HMPREF1058_RS17895at 305.260 kb on - strand, within HMPREF1058_RS17895at 305.260 kb on - strand, within HMPREF1058_RS17895at 305.277 kb on - strand, within HMPREF1058_RS17895at 305.411 kb on - strand, within HMPREF1058_RS17895at 305.435 kb on - strand, within HMPREF1058_RS17895at 305.436 kb on + strand, within HMPREF1058_RS17895at 305.437 kb on - strand, within HMPREF1058_RS17895at 305.529 kb on + strand, within HMPREF1058_RS17895at 305.533 kb on - strand, within HMPREF1058_RS17895at 305.626 kb on - strand, within HMPREF1058_RS17895at 305.644 kb on + strand, within HMPREF1058_RS17895at 305.644 kb on + strand, within HMPREF1058_RS17895at 305.664 kb on + strand, within HMPREF1058_RS17895at 305.664 kb on + strand, within HMPREF1058_RS17895at 305.664 kb on + strand, within HMPREF1058_RS17895at 305.664 kb on + strand, within HMPREF1058_RS17895at 305.744 kb on + strand, within HMPREF1058_RS17895at 305.745 kb on - strand, within HMPREF1058_RS17895at 305.745 kb on - strand, within HMPREF1058_RS17895at 305.813 kb on - strand, within HMPREF1058_RS17895at 305.924 kb on - strand, within HMPREF1058_RS17895at 306.002 kb on + strand, within HMPREF1058_RS17895at 306.003 kb on - strand, within HMPREF1058_RS17895at 306.003 kb on - strand, within HMPREF1058_RS17895at 306.118 kb on - strand, within HMPREF1058_RS17895at 306.165 kb on - strandat 306.179 kb on - strandat 306.179 kb on - strandat 306.230 kb on - strandat 306.285 kb on - strandat 306.298 kb on + strandat 306.313 kb on - strandat 306.313 kb on - strandat 306.376 kb on - strandat 306.376 kb on - strandat 306.398 kb on + strandat 306.554 kb on + strand, within HMPREF1058_RS17890at 306.570 kb on + strand, within HMPREF1058_RS17890at 306.585 kb on - strand, within HMPREF1058_RS17890at 306.612 kb on + strand, within HMPREF1058_RS17890at 306.748 kb on - strand, within HMPREF1058_RS17890at 306.748 kb on - strand, within HMPREF1058_RS17890at 306.837 kb on - strand, within HMPREF1058_RS17890at 306.889 kb on + strand, within HMPREF1058_RS17890at 306.889 kb on + strand, within HMPREF1058_RS17890at 306.890 kb on - strand, within HMPREF1058_RS17890at 306.936 kb on + strand, within HMPREF1058_RS17890at 306.936 kb on + strand, within HMPREF1058_RS17890at 306.937 kb on - strand, within HMPREF1058_RS17890at 306.938 kb on + strand, within HMPREF1058_RS17890at 306.938 kb on + strand, within HMPREF1058_RS17890at 306.939 kb on - strand, within HMPREF1058_RS17890at 306.991 kb on - strand, within HMPREF1058_RS17890at 307.059 kb on + strand, within HMPREF1058_RS17890at 307.059 kb on + strand, within HMPREF1058_RS17890at 307.060 kb on - strand, within HMPREF1058_RS17890at 307.060 kb on - strand, within HMPREF1058_RS17890at 307.063 kb on + strand, within HMPREF1058_RS17890at 307.063 kb on + strand, within HMPREF1058_RS17890at 307.063 kb on + strand, within HMPREF1058_RS17890at 307.080 kb on + strand, within HMPREF1058_RS17890at 307.232 kb on + strand, within HMPREF1058_RS17890at 307.233 kb on - strand, within HMPREF1058_RS17890at 307.233 kb on - strand, within HMPREF1058_RS17890

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen
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304,136 + +0.1
304,152 + -1.1
304,153 - +0.1
304,153 - +0.0
304,153 - +0.2
304,164 + +0.0
304,189 + +0.7
304,238 - +2.1
304,383 + HMPREF1058_RS17900 0.25 -1.2
304,384 - HMPREF1058_RS17900 0.25 -0.5
304,401 - HMPREF1058_RS17900 0.27 +0.1
304,405 - HMPREF1058_RS17900 0.28 +2.5
304,407 + HMPREF1058_RS17900 0.28 -0.1
304,409 + HMPREF1058_RS17900 0.28 -0.2
304,421 + HMPREF1058_RS17900 0.30 -0.3
304,421 + HMPREF1058_RS17900 0.30 +0.3
304,421 + HMPREF1058_RS17900 0.30 +0.9
304,422 - HMPREF1058_RS17900 0.30 -0.0
304,422 - HMPREF1058_RS17900 0.30 -0.0
304,426 + HMPREF1058_RS17900 0.31 -0.5
304,439 - HMPREF1058_RS17900 0.32 +0.3
304,442 - HMPREF1058_RS17900 0.33 -0.1
304,474 - HMPREF1058_RS17900 0.37 +1.7
304,497 - HMPREF1058_RS17900 0.41 -0.6
304,623 + HMPREF1058_RS17900 0.58 -0.9
304,645 + HMPREF1058_RS17900 0.61 -0.4
304,677 + HMPREF1058_RS17900 0.66 +0.9
304,677 + HMPREF1058_RS17900 0.66 +2.1
304,677 + HMPREF1058_RS17900 0.66 +0.1
304,680 - HMPREF1058_RS17900 0.66 +0.2
304,681 + HMPREF1058_RS17900 0.66 +0.3
304,681 + HMPREF1058_RS17900 0.66 -0.7
304,726 - HMPREF1058_RS17900 0.73 -0.4
304,729 - HMPREF1058_RS17900 0.73 +0.6
304,744 + HMPREF1058_RS17900 0.75 -0.3
304,745 - HMPREF1058_RS17900 0.75 -1.0
304,763 - HMPREF1058_RS17900 0.78 -0.4
304,767 + HMPREF1058_RS17900 0.78 -0.3
304,768 - HMPREF1058_RS17900 0.78 -0.1
304,827 - HMPREF1058_RS17900 0.87 +0.8
304,855 + +0.8
304,920 + +0.6
304,921 - -0.0
305,009 - +0.6
305,011 + +2.1
305,084 + -0.1
305,084 + +0.9
305,108 + +0.5
305,257 + HMPREF1058_RS17895 0.18 -0.5
305,257 + HMPREF1058_RS17895 0.18 -0.2
305,257 + HMPREF1058_RS17895 0.18 -0.6
305,257 + HMPREF1058_RS17895 0.18 -0.8
305,257 + HMPREF1058_RS17895 0.18 +0.6
305,258 - HMPREF1058_RS17895 0.18 -0.1
305,258 - HMPREF1058_RS17895 0.18 +0.3
305,259 + HMPREF1058_RS17895 0.19 +0.1
305,259 + HMPREF1058_RS17895 0.19 +0.3
305,260 - HMPREF1058_RS17895 0.19 +0.3
305,260 - HMPREF1058_RS17895 0.19 +1.1
305,277 - HMPREF1058_RS17895 0.20 -0.2
305,411 - HMPREF1058_RS17895 0.31 -0.7
305,435 - HMPREF1058_RS17895 0.33 +0.3
305,436 + HMPREF1058_RS17895 0.33 -0.3
305,437 - HMPREF1058_RS17895 0.33 -0.2
305,529 + HMPREF1058_RS17895 0.40 -0.3
305,533 - HMPREF1058_RS17895 0.40 +1.6
305,626 - HMPREF1058_RS17895 0.48 -1.3
305,644 + HMPREF1058_RS17895 0.49 -1.8
305,644 + HMPREF1058_RS17895 0.49 -0.1
305,664 + HMPREF1058_RS17895 0.51 -0.3
305,664 + HMPREF1058_RS17895 0.51 +0.6
305,664 + HMPREF1058_RS17895 0.51 -0.7
305,664 + HMPREF1058_RS17895 0.51 +0.7
305,744 + HMPREF1058_RS17895 0.57 +0.5
305,745 - HMPREF1058_RS17895 0.57 +0.3
305,745 - HMPREF1058_RS17895 0.57 +0.8
305,813 - HMPREF1058_RS17895 0.63 -0.5
305,924 - HMPREF1058_RS17895 0.72 -1.2
306,002 + HMPREF1058_RS17895 0.78 -0.3
306,003 - HMPREF1058_RS17895 0.78 -1.0
306,003 - HMPREF1058_RS17895 0.78 +0.1
306,118 - HMPREF1058_RS17895 0.87 +0.5
306,165 - +0.0
306,179 - -0.3
306,179 - +0.2
306,230 - +0.0
306,285 - -0.1
306,298 + -0.6
306,313 - +1.2
306,313 - -1.1
306,376 - +0.3
306,376 - +0.2
306,398 + -0.1
306,554 + HMPREF1058_RS17890 0.10 +1.2
306,570 + HMPREF1058_RS17890 0.11 +1.1
306,585 - HMPREF1058_RS17890 0.12 -0.1
306,612 + HMPREF1058_RS17890 0.14 +0.8
306,748 - HMPREF1058_RS17890 0.23 +1.9
306,748 - HMPREF1058_RS17890 0.23 +1.3
306,837 - HMPREF1058_RS17890 0.29 +0.8
306,889 + HMPREF1058_RS17890 0.32 +0.9
306,889 + HMPREF1058_RS17890 0.32 +0.1
306,890 - HMPREF1058_RS17890 0.32 +1.7
306,936 + HMPREF1058_RS17890 0.36 +0.3
306,936 + HMPREF1058_RS17890 0.36 +0.3
306,937 - HMPREF1058_RS17890 0.36 +1.4
306,938 + HMPREF1058_RS17890 0.36 +2.2
306,938 + HMPREF1058_RS17890 0.36 +0.9
306,939 - HMPREF1058_RS17890 0.36 +1.3
306,991 - HMPREF1058_RS17890 0.39 +1.1
307,059 + HMPREF1058_RS17890 0.44 +0.9
307,059 + HMPREF1058_RS17890 0.44 +0.5
307,060 - HMPREF1058_RS17890 0.44 +0.6
307,060 - HMPREF1058_RS17890 0.44 +1.6
307,063 + HMPREF1058_RS17890 0.44 +0.7
307,063 + HMPREF1058_RS17890 0.44 +1.2
307,063 + HMPREF1058_RS17890 0.44 -0.2
307,080 + HMPREF1058_RS17890 0.45 +1.2
307,232 + HMPREF1058_RS17890 0.55 +0.5
307,233 - HMPREF1058_RS17890 0.55 +1.4
307,233 - HMPREF1058_RS17890 0.55 +0.6

Or see this region's nucleotide sequence