Experiment: L-Asparagine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17230 and HMPREF1058_RS17225 are separated by 165 nucleotides HMPREF1058_RS17225 and HMPREF1058_RS17220 are separated by 104 nucleotides
HMPREF1058_RS17230: HMPREF1058_RS17230 - glycoside hydrolase family 95 protein, at 494,867 to 497,311
_RS17230
HMPREF1058_RS17225: HMPREF1058_RS17225 - phosphopyruvate hydratase, at 497,477 to 498,772
_RS17225
HMPREF1058_RS17220: HMPREF1058_RS17220 - ATP-binding protein, at 498,877 to 500,445
_RS17220
Position (kb) 497
498
499 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 496.515 kb on - strand, within HMPREF1058_RS17230 at 496.525 kb on - strand, within HMPREF1058_RS17230 at 496.552 kb on + strand, within HMPREF1058_RS17230 at 496.581 kb on - strand, within HMPREF1058_RS17230 at 496.624 kb on + strand, within HMPREF1058_RS17230 at 496.637 kb on - strand, within HMPREF1058_RS17230 at 496.765 kb on + strand, within HMPREF1058_RS17230 at 496.802 kb on - strand, within HMPREF1058_RS17230 at 496.805 kb on + strand, within HMPREF1058_RS17230 at 496.905 kb on + strand, within HMPREF1058_RS17230 at 496.906 kb on - strand, within HMPREF1058_RS17230 at 496.917 kb on + strand, within HMPREF1058_RS17230 at 496.924 kb on + strand, within HMPREF1058_RS17230 at 496.924 kb on + strand, within HMPREF1058_RS17230 at 496.925 kb on - strand, within HMPREF1058_RS17230 at 497.028 kb on + strand, within HMPREF1058_RS17230 at 497.065 kb on + strand, within HMPREF1058_RS17230 at 497.066 kb on - strand, within HMPREF1058_RS17230 at 497.093 kb on - strand at 497.242 kb on - strand at 497.280 kb on - strand at 497.449 kb on + strand at 497.685 kb on + strand, within HMPREF1058_RS17225 at 497.689 kb on + strand, within HMPREF1058_RS17225 at 497.726 kb on - strand, within HMPREF1058_RS17225 at 497.780 kb on - strand, within HMPREF1058_RS17225 at 497.804 kb on - strand, within HMPREF1058_RS17225 at 497.888 kb on - strand, within HMPREF1058_RS17225 at 497.888 kb on - strand, within HMPREF1058_RS17225 at 497.891 kb on + strand, within HMPREF1058_RS17225 at 497.891 kb on + strand, within HMPREF1058_RS17225 at 497.891 kb on + strand, within HMPREF1058_RS17225 at 497.892 kb on - strand, within HMPREF1058_RS17225 at 498.234 kb on - strand, within HMPREF1058_RS17225 at 498.234 kb on - strand, within HMPREF1058_RS17225 at 498.239 kb on + strand, within HMPREF1058_RS17225 at 498.242 kb on - strand, within HMPREF1058_RS17225 at 498.485 kb on - strand, within HMPREF1058_RS17225 at 498.646 kb on + strand at 498.735 kb on - strand at 498.743 kb on - strand at 498.770 kb on + strand at 498.779 kb on + strand at 498.779 kb on + strand at 498.779 kb on + strand at 498.781 kb on + strand at 498.856 kb on + strand at 498.859 kb on + strand at 498.859 kb on + strand at 498.976 kb on - strand at 498.994 kb on + strand at 499.042 kb on + strand, within HMPREF1058_RS17220 at 499.045 kb on - strand, within HMPREF1058_RS17220 at 499.048 kb on + strand, within HMPREF1058_RS17220 at 499.052 kb on + strand, within HMPREF1058_RS17220 at 499.052 kb on + strand, within HMPREF1058_RS17220 at 499.121 kb on + strand, within HMPREF1058_RS17220 at 499.122 kb on - strand, within HMPREF1058_RS17220 at 499.156 kb on - strand, within HMPREF1058_RS17220 at 499.216 kb on + strand, within HMPREF1058_RS17220 at 499.217 kb on - strand, within HMPREF1058_RS17220 at 499.217 kb on - strand, within HMPREF1058_RS17220 at 499.257 kb on + strand, within HMPREF1058_RS17220 at 499.258 kb on - strand, within HMPREF1058_RS17220 at 499.374 kb on + strand, within HMPREF1058_RS17220 at 499.374 kb on + strand, within HMPREF1058_RS17220 at 499.452 kb on + strand, within HMPREF1058_RS17220 at 499.482 kb on - strand, within HMPREF1058_RS17220 at 499.506 kb on - strand, within HMPREF1058_RS17220 at 499.565 kb on + strand, within HMPREF1058_RS17220 at 499.566 kb on - strand, within HMPREF1058_RS17220 at 499.642 kb on - strand, within HMPREF1058_RS17220 at 499.643 kb on + strand, within HMPREF1058_RS17220 at 499.682 kb on + strand, within HMPREF1058_RS17220 at 499.721 kb on + strand, within HMPREF1058_RS17220 at 499.721 kb on + strand, within HMPREF1058_RS17220 at 499.750 kb on - strand, within HMPREF1058_RS17220
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen remove 496,515 - HMPREF1058_RS17230 0.67 -0.7 496,525 - HMPREF1058_RS17230 0.68 +0.2 496,552 + HMPREF1058_RS17230 0.69 +0.2 496,581 - HMPREF1058_RS17230 0.70 -1.7 496,624 + HMPREF1058_RS17230 0.72 +0.4 496,637 - HMPREF1058_RS17230 0.72 +0.6 496,765 + HMPREF1058_RS17230 0.78 +1.5 496,802 - HMPREF1058_RS17230 0.79 +1.0 496,805 + HMPREF1058_RS17230 0.79 +0.2 496,905 + HMPREF1058_RS17230 0.83 -0.1 496,906 - HMPREF1058_RS17230 0.83 -0.3 496,917 + HMPREF1058_RS17230 0.84 +1.2 496,924 + HMPREF1058_RS17230 0.84 +0.3 496,924 + HMPREF1058_RS17230 0.84 +0.9 496,925 - HMPREF1058_RS17230 0.84 -0.7 497,028 + HMPREF1058_RS17230 0.88 +0.0 497,065 + HMPREF1058_RS17230 0.90 +0.9 497,066 - HMPREF1058_RS17230 0.90 -0.5 497,093 - -0.5 497,242 - -1.5 497,280 - -0.6 497,449 + -1.2 497,685 + HMPREF1058_RS17225 0.16 +1.1 497,689 + HMPREF1058_RS17225 0.16 +0.6 497,726 - HMPREF1058_RS17225 0.19 -0.1 497,780 - HMPREF1058_RS17225 0.23 +1.6 497,804 - HMPREF1058_RS17225 0.25 +0.2 497,888 - HMPREF1058_RS17225 0.32 -0.5 497,888 - HMPREF1058_RS17225 0.32 +0.9 497,891 + HMPREF1058_RS17225 0.32 +3.1 497,891 + HMPREF1058_RS17225 0.32 -0.7 497,891 + HMPREF1058_RS17225 0.32 +1.2 497,892 - HMPREF1058_RS17225 0.32 +0.9 498,234 - HMPREF1058_RS17225 0.58 -0.8 498,234 - HMPREF1058_RS17225 0.58 -1.4 498,239 + HMPREF1058_RS17225 0.59 -0.0 498,242 - HMPREF1058_RS17225 0.59 -0.2 498,485 - HMPREF1058_RS17225 0.78 -0.1 498,646 + +0.8 498,735 - +0.9 498,743 - -0.1 498,770 + -0.2 498,779 + -0.0 498,779 + +0.3 498,779 + +0.3 498,781 + +1.8 498,856 + -0.7 498,859 + -0.8 498,859 + -0.2 498,976 - +0.4 498,994 + +1.0 499,042 + HMPREF1058_RS17220 0.11 +0.1 499,045 - HMPREF1058_RS17220 0.11 +0.5 499,048 + HMPREF1058_RS17220 0.11 -1.3 499,052 + HMPREF1058_RS17220 0.11 +1.0 499,052 + HMPREF1058_RS17220 0.11 -0.5 499,121 + HMPREF1058_RS17220 0.16 -0.2 499,122 - HMPREF1058_RS17220 0.16 -0.7 499,156 - HMPREF1058_RS17220 0.18 -0.5 499,216 + HMPREF1058_RS17220 0.22 -0.8 499,217 - HMPREF1058_RS17220 0.22 -1.4 499,217 - HMPREF1058_RS17220 0.22 +0.2 499,257 + HMPREF1058_RS17220 0.24 +0.4 499,258 - HMPREF1058_RS17220 0.24 -2.3 499,374 + HMPREF1058_RS17220 0.32 +1.0 499,374 + HMPREF1058_RS17220 0.32 -0.7 499,452 + HMPREF1058_RS17220 0.37 -0.2 499,482 - HMPREF1058_RS17220 0.39 +2.6 499,506 - HMPREF1058_RS17220 0.40 -0.3 499,565 + HMPREF1058_RS17220 0.44 -1.2 499,566 - HMPREF1058_RS17220 0.44 -1.8 499,642 - HMPREF1058_RS17220 0.49 +0.4 499,643 + HMPREF1058_RS17220 0.49 -2.7 499,682 + HMPREF1058_RS17220 0.51 +1.6 499,721 + HMPREF1058_RS17220 0.54 +0.5 499,721 + HMPREF1058_RS17220 0.54 +0.6 499,750 - HMPREF1058_RS17220 0.56 -0.2
Or see this region's nucleotide sequence