Experiment: L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17400 and HMPREF1058_RS17395 are separated by 108 nucleotides HMPREF1058_RS17395 and HMPREF1058_RS21415 overlap by 4 nucleotides HMPREF1058_RS21415 and HMPREF1058_RS17390 are separated by 40 nucleotides HMPREF1058_RS17390 and HMPREF1058_RS17385 are separated by 248 nucleotides HMPREF1058_RS17385 and HMPREF1058_RS17380 are separated by 150 nucleotides
HMPREF1058_RS17400: HMPREF1058_RS17400 - tyrosine-protein kinase, at 452,443 to 454,854
_RS17400
HMPREF1058_RS17395: HMPREF1058_RS17395 - N-acetylmuramoyl-L-alanine amidase, at 454,963 to 455,412
_RS17395
HMPREF1058_RS21415: HMPREF1058_RS21415 - smalltalk protein, at 455,409 to 455,510
_RS21415
HMPREF1058_RS17390: HMPREF1058_RS17390 - HU family DNA-binding protein, at 455,551 to 455,979
_RS17390
HMPREF1058_RS17385: HMPREF1058_RS17385 - DUF4248 domain-containing protein, at 456,228 to 456,458
_RS17385
HMPREF1058_RS17380: HMPREF1058_RS17380 - DUF3987 domain-containing protein, at 456,609 to 458,987
_RS17380
Position (kb) 455
456 Strain fitness (log2 ratio) -2
-1
0
1
2 at 454.551 kb on + strand, within HMPREF1058_RS17400 at 454.627 kb on + strand at 454.627 kb on + strand at 454.627 kb on + strand at 454.627 kb on + strand at 454.628 kb on - strand at 454.645 kb on + strand at 454.710 kb on - strand at 454.710 kb on - strand at 454.714 kb on - strand at 454.778 kb on - strand at 455.060 kb on - strand, within HMPREF1058_RS17395 at 455.192 kb on + strand, within HMPREF1058_RS17395 at 455.217 kb on + strand, within HMPREF1058_RS17395 at 455.501 kb on + strand at 455.553 kb on - strand at 455.687 kb on + strand, within HMPREF1058_RS17390 at 455.687 kb on + strand, within HMPREF1058_RS17390 at 455.688 kb on - strand, within HMPREF1058_RS17390 at 455.688 kb on - strand, within HMPREF1058_RS17390 at 455.688 kb on - strand, within HMPREF1058_RS17390 at 455.756 kb on - strand, within HMPREF1058_RS17390 at 455.879 kb on - strand, within HMPREF1058_RS17390 at 456.265 kb on - strand, within HMPREF1058_RS17385 at 456.290 kb on - strand, within HMPREF1058_RS17385 at 456.290 kb on - strand, within HMPREF1058_RS17385 at 456.290 kb on - strand, within HMPREF1058_RS17385 at 456.292 kb on - strand, within HMPREF1058_RS17385 at 456.433 kb on + strand, within HMPREF1058_RS17385 at 456.456 kb on + strand at 456.463 kb on + strand at 456.463 kb on + strand at 456.587 kb on + strand at 456.656 kb on + strand at 456.656 kb on + strand at 456.657 kb on - strand at 456.657 kb on - strand at 456.704 kb on - strand at 456.842 kb on + strand at 456.944 kb on + strand, within HMPREF1058_RS17380 at 456.945 kb on - strand, within HMPREF1058_RS17380
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen remove 454,551 + HMPREF1058_RS17400 0.87 -0.6 454,627 + -1.0 454,627 + +0.3 454,627 + +0.7 454,627 + -0.0 454,628 - -0.6 454,645 + +0.0 454,710 - +1.1 454,710 - -0.4 454,714 - -0.2 454,778 - +1.0 455,060 - HMPREF1058_RS17395 0.22 -0.9 455,192 + HMPREF1058_RS17395 0.51 +0.2 455,217 + HMPREF1058_RS17395 0.56 -1.1 455,501 + -0.3 455,553 - +0.3 455,687 + HMPREF1058_RS17390 0.32 +2.3 455,687 + HMPREF1058_RS17390 0.32 -0.7 455,688 - HMPREF1058_RS17390 0.32 -0.3 455,688 - HMPREF1058_RS17390 0.32 -0.7 455,688 - HMPREF1058_RS17390 0.32 -1.7 455,756 - HMPREF1058_RS17390 0.48 -0.7 455,879 - HMPREF1058_RS17390 0.76 +0.1 456,265 - HMPREF1058_RS17385 0.16 -0.8 456,290 - HMPREF1058_RS17385 0.27 -1.4 456,290 - HMPREF1058_RS17385 0.27 -1.5 456,290 - HMPREF1058_RS17385 0.27 -1.7 456,292 - HMPREF1058_RS17385 0.28 -0.7 456,433 + HMPREF1058_RS17385 0.89 -0.7 456,456 + +0.9 456,463 + +0.9 456,463 + -0.6 456,587 + +0.5 456,656 + -0.5 456,656 + -2.3 456,657 - +0.3 456,657 - +0.1 456,704 - +0.1 456,842 + -0.6 456,944 + HMPREF1058_RS17380 0.14 -0.4 456,945 - HMPREF1058_RS17380 0.14 -0.5
Or see this region's nucleotide sequence