Experiment: L-Fucose 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08870 and HMPREF1058_RS08865 are separated by 92 nucleotides HMPREF1058_RS08865 and HMPREF1058_RS08860 are separated by 39 nucleotides
HMPREF1058_RS08870: HMPREF1058_RS08870 - L-rhamnose/proton symporter RhaT, at 1,009,939 to 1,010,958
_RS08870
HMPREF1058_RS08865: HMPREF1058_RS08865 - L-rhamnose isomerase, at 1,011,051 to 1,012,307
_RS08865
HMPREF1058_RS08860: HMPREF1058_RS08860 - rhamnulokinase, at 1,012,347 to 1,013,825
_RS08860
Position (kb)
1011
1012
1013 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1010.051 kb on - strand, within HMPREF1058_RS08870 at 1010.083 kb on + strand, within HMPREF1058_RS08870 at 1010.085 kb on + strand, within HMPREF1058_RS08870 at 1010.086 kb on - strand, within HMPREF1058_RS08870 at 1010.107 kb on + strand, within HMPREF1058_RS08870 at 1010.160 kb on + strand, within HMPREF1058_RS08870 at 1010.162 kb on + strand, within HMPREF1058_RS08870 at 1010.162 kb on + strand, within HMPREF1058_RS08870 at 1010.162 kb on + strand, within HMPREF1058_RS08870 at 1010.170 kb on + strand, within HMPREF1058_RS08870 at 1010.199 kb on + strand, within HMPREF1058_RS08870 at 1010.390 kb on - strand, within HMPREF1058_RS08870 at 1010.522 kb on - strand, within HMPREF1058_RS08870 at 1010.548 kb on - strand, within HMPREF1058_RS08870 at 1010.552 kb on - strand, within HMPREF1058_RS08870 at 1010.552 kb on - strand, within HMPREF1058_RS08870 at 1010.552 kb on - strand, within HMPREF1058_RS08870 at 1010.568 kb on + strand, within HMPREF1058_RS08870 at 1010.652 kb on + strand, within HMPREF1058_RS08870 at 1010.720 kb on - strand, within HMPREF1058_RS08870 at 1010.722 kb on + strand, within HMPREF1058_RS08870 at 1010.723 kb on - strand, within HMPREF1058_RS08870 at 1010.724 kb on + strand, within HMPREF1058_RS08870 at 1010.725 kb on - strand, within HMPREF1058_RS08870 at 1010.725 kb on - strand, within HMPREF1058_RS08870 at 1010.725 kb on - strand, within HMPREF1058_RS08870 at 1010.729 kb on + strand, within HMPREF1058_RS08870 at 1010.729 kb on + strand, within HMPREF1058_RS08870 at 1010.797 kb on + strand, within HMPREF1058_RS08870 at 1010.798 kb on - strand, within HMPREF1058_RS08870 at 1010.798 kb on - strand, within HMPREF1058_RS08870 at 1010.836 kb on + strand, within HMPREF1058_RS08870 at 1010.845 kb on + strand, within HMPREF1058_RS08870 at 1010.845 kb on + strand, within HMPREF1058_RS08870 at 1010.897 kb on + strand at 1010.898 kb on - strand at 1010.898 kb on - strand at 1010.923 kb on + strand at 1010.984 kb on + strand at 1010.984 kb on + strand at 1010.985 kb on - strand at 1010.985 kb on - strand at 1010.985 kb on - strand at 1011.141 kb on - strand at 1011.147 kb on + strand at 1011.221 kb on - strand, within HMPREF1058_RS08865 at 1011.295 kb on + strand, within HMPREF1058_RS08865 at 1011.345 kb on + strand, within HMPREF1058_RS08865 at 1011.346 kb on - strand, within HMPREF1058_RS08865 at 1011.414 kb on + strand, within HMPREF1058_RS08865 at 1011.414 kb on + strand, within HMPREF1058_RS08865 at 1011.473 kb on - strand, within HMPREF1058_RS08865 at 1011.592 kb on - strand, within HMPREF1058_RS08865 at 1011.598 kb on + strand, within HMPREF1058_RS08865 at 1011.654 kb on - strand, within HMPREF1058_RS08865 at 1011.654 kb on - strand, within HMPREF1058_RS08865 at 1011.655 kb on + strand, within HMPREF1058_RS08865 at 1012.044 kb on + strand, within HMPREF1058_RS08865 at 1012.044 kb on + strand, within HMPREF1058_RS08865 at 1012.045 kb on - strand, within HMPREF1058_RS08865 at 1012.046 kb on + strand, within HMPREF1058_RS08865 at 1012.046 kb on + strand, within HMPREF1058_RS08865 at 1012.047 kb on - strand, within HMPREF1058_RS08865 at 1012.048 kb on + strand, within HMPREF1058_RS08865 at 1012.048 kb on + strand, within HMPREF1058_RS08865 at 1012.049 kb on - strand, within HMPREF1058_RS08865 at 1012.049 kb on - strand, within HMPREF1058_RS08865 at 1012.049 kb on - strand, within HMPREF1058_RS08865 at 1012.049 kb on - strand, within HMPREF1058_RS08865 at 1012.113 kb on - strand, within HMPREF1058_RS08865 at 1012.286 kb on + strand at 1012.311 kb on - strand at 1012.346 kb on - strand at 1012.353 kb on - strand at 1012.382 kb on + strand at 1012.383 kb on - strand at 1012.449 kb on + strand at 1012.461 kb on - strand at 1012.551 kb on + strand, within HMPREF1058_RS08860 at 1012.655 kb on - strand, within HMPREF1058_RS08860 at 1012.728 kb on + strand, within HMPREF1058_RS08860 at 1013.001 kb on + strand, within HMPREF1058_RS08860 at 1013.002 kb on - strand, within HMPREF1058_RS08860 at 1013.004 kb on - strand, within HMPREF1058_RS08860
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose 2.5 mg/ml (C) remove 1,010,051 - HMPREF1058_RS08870 0.11 +0.9 1,010,083 + HMPREF1058_RS08870 0.14 +0.1 1,010,085 + HMPREF1058_RS08870 0.14 -0.2 1,010,086 - HMPREF1058_RS08870 0.14 +0.3 1,010,107 + HMPREF1058_RS08870 0.16 +0.8 1,010,160 + HMPREF1058_RS08870 0.22 -0.8 1,010,162 + HMPREF1058_RS08870 0.22 -0.9 1,010,162 + HMPREF1058_RS08870 0.22 -1.0 1,010,162 + HMPREF1058_RS08870 0.22 -0.4 1,010,170 + HMPREF1058_RS08870 0.23 -1.4 1,010,199 + HMPREF1058_RS08870 0.25 -0.5 1,010,390 - HMPREF1058_RS08870 0.44 -0.6 1,010,522 - HMPREF1058_RS08870 0.57 -0.1 1,010,548 - HMPREF1058_RS08870 0.60 -0.5 1,010,552 - HMPREF1058_RS08870 0.60 +0.5 1,010,552 - HMPREF1058_RS08870 0.60 -0.2 1,010,552 - HMPREF1058_RS08870 0.60 -0.2 1,010,568 + HMPREF1058_RS08870 0.62 -2.1 1,010,652 + HMPREF1058_RS08870 0.70 -0.2 1,010,720 - HMPREF1058_RS08870 0.77 +0.8 1,010,722 + HMPREF1058_RS08870 0.77 -0.1 1,010,723 - HMPREF1058_RS08870 0.77 -0.5 1,010,724 + HMPREF1058_RS08870 0.77 -0.1 1,010,725 - HMPREF1058_RS08870 0.77 +0.5 1,010,725 - HMPREF1058_RS08870 0.77 -0.5 1,010,725 - HMPREF1058_RS08870 0.77 +0.3 1,010,729 + HMPREF1058_RS08870 0.77 -0.1 1,010,729 + HMPREF1058_RS08870 0.77 +0.3 1,010,797 + HMPREF1058_RS08870 0.84 +0.4 1,010,798 - HMPREF1058_RS08870 0.84 +0.4 1,010,798 - HMPREF1058_RS08870 0.84 +0.9 1,010,836 + HMPREF1058_RS08870 0.88 -0.4 1,010,845 + HMPREF1058_RS08870 0.89 -0.0 1,010,845 + HMPREF1058_RS08870 0.89 -0.9 1,010,897 + -0.3 1,010,898 - +0.3 1,010,898 - -0.4 1,010,923 + +0.2 1,010,984 + +0.2 1,010,984 + -0.1 1,010,985 - +0.1 1,010,985 - -0.2 1,010,985 - -0.4 1,011,141 - +0.2 1,011,147 + -1.1 1,011,221 - HMPREF1058_RS08865 0.14 -0.4 1,011,295 + HMPREF1058_RS08865 0.19 -0.7 1,011,345 + HMPREF1058_RS08865 0.23 -0.5 1,011,346 - HMPREF1058_RS08865 0.23 -1.0 1,011,414 + HMPREF1058_RS08865 0.29 +0.1 1,011,414 + HMPREF1058_RS08865 0.29 -0.7 1,011,473 - HMPREF1058_RS08865 0.34 -1.4 1,011,592 - HMPREF1058_RS08865 0.43 +0.1 1,011,598 + HMPREF1058_RS08865 0.44 -2.1 1,011,654 - HMPREF1058_RS08865 0.48 -0.6 1,011,654 - HMPREF1058_RS08865 0.48 -0.3 1,011,655 + HMPREF1058_RS08865 0.48 -0.4 1,012,044 + HMPREF1058_RS08865 0.79 -0.9 1,012,044 + HMPREF1058_RS08865 0.79 -0.2 1,012,045 - HMPREF1058_RS08865 0.79 -2.6 1,012,046 + HMPREF1058_RS08865 0.79 +0.9 1,012,046 + HMPREF1058_RS08865 0.79 -1.0 1,012,047 - HMPREF1058_RS08865 0.79 -1.1 1,012,048 + HMPREF1058_RS08865 0.79 -0.3 1,012,048 + HMPREF1058_RS08865 0.79 +0.7 1,012,049 - HMPREF1058_RS08865 0.79 +0.4 1,012,049 - HMPREF1058_RS08865 0.79 -1.0 1,012,049 - HMPREF1058_RS08865 0.79 +0.1 1,012,049 - HMPREF1058_RS08865 0.79 +0.6 1,012,113 - HMPREF1058_RS08865 0.84 -0.1 1,012,286 + -1.0 1,012,311 - -0.7 1,012,346 - -0.4 1,012,353 - +0.2 1,012,382 + -5.2 1,012,383 - -1.2 1,012,449 + -0.9 1,012,461 - -3.4 1,012,551 + HMPREF1058_RS08860 0.14 -4.2 1,012,655 - HMPREF1058_RS08860 0.21 -3.2 1,012,728 + HMPREF1058_RS08860 0.26 -4.4 1,013,001 + HMPREF1058_RS08860 0.44 +0.1 1,013,002 - HMPREF1058_RS08860 0.44 -3.5 1,013,004 - HMPREF1058_RS08860 0.44 -2.7
Or see this region's nucleotide sequence