Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08865

Experiment: L-Fucose 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Fucose 2.5 mg/ml (C)
1,010,051	-		HMPREF1058_RS08870	0.11	+0.9
1,010,083	+		HMPREF1058_RS08870	0.14	+0.1
1,010,085	+		HMPREF1058_RS08870	0.14	-0.2
1,010,086	-		HMPREF1058_RS08870	0.14	+0.3
1,010,107	+		HMPREF1058_RS08870	0.16	+0.8
1,010,160	+		HMPREF1058_RS08870	0.22	-0.8
1,010,162	+		HMPREF1058_RS08870	0.22	-0.9
1,010,162	+		HMPREF1058_RS08870	0.22	-1.0
1,010,162	+		HMPREF1058_RS08870	0.22	-0.4
1,010,170	+		HMPREF1058_RS08870	0.23	-1.4
1,010,199	+		HMPREF1058_RS08870	0.25	-0.5
1,010,390	-		HMPREF1058_RS08870	0.44	-0.6
1,010,522	-		HMPREF1058_RS08870	0.57	-0.1
1,010,548	-		HMPREF1058_RS08870	0.60	-0.5
1,010,552	-		HMPREF1058_RS08870	0.60	+0.5
1,010,552	-		HMPREF1058_RS08870	0.60	-0.2
1,010,552	-		HMPREF1058_RS08870	0.60	-0.2
1,010,568	+		HMPREF1058_RS08870	0.62	-2.1
1,010,652	+		HMPREF1058_RS08870	0.70	-0.2
1,010,720	-		HMPREF1058_RS08870	0.77	+0.8
1,010,722	+		HMPREF1058_RS08870	0.77	-0.1
1,010,723	-		HMPREF1058_RS08870	0.77	-0.5
1,010,724	+		HMPREF1058_RS08870	0.77	-0.1
1,010,725	-		HMPREF1058_RS08870	0.77	+0.5
1,010,725	-		HMPREF1058_RS08870	0.77	-0.5
1,010,725	-		HMPREF1058_RS08870	0.77	+0.3
1,010,729	+		HMPREF1058_RS08870	0.77	-0.1
1,010,729	+		HMPREF1058_RS08870	0.77	+0.3
1,010,797	+		HMPREF1058_RS08870	0.84	+0.4
1,010,798	-		HMPREF1058_RS08870	0.84	+0.4
1,010,798	-		HMPREF1058_RS08870	0.84	+0.9
1,010,836	+		HMPREF1058_RS08870	0.88	-0.4
1,010,845	+		HMPREF1058_RS08870	0.89	-0.0
1,010,845	+		HMPREF1058_RS08870	0.89	-0.9
1,010,897	+				-0.3
1,010,898	-				+0.3
1,010,898	-				-0.4
1,010,923	+				+0.2
1,010,984	+				+0.2
1,010,984	+				-0.1
1,010,985	-				+0.1
1,010,985	-				-0.2
1,010,985	-				-0.4
1,011,141	-				+0.2
1,011,147	+				-1.1
1,011,221	-		HMPREF1058_RS08865	0.14	-0.4
1,011,295	+		HMPREF1058_RS08865	0.19	-0.7
1,011,345	+		HMPREF1058_RS08865	0.23	-0.5
1,011,346	-		HMPREF1058_RS08865	0.23	-1.0
1,011,414	+		HMPREF1058_RS08865	0.29	+0.1
1,011,414	+		HMPREF1058_RS08865	0.29	-0.7
1,011,473	-		HMPREF1058_RS08865	0.34	-1.4
1,011,592	-		HMPREF1058_RS08865	0.43	+0.1
1,011,598	+		HMPREF1058_RS08865	0.44	-2.1
1,011,654	-		HMPREF1058_RS08865	0.48	-0.6
1,011,654	-		HMPREF1058_RS08865	0.48	-0.3
1,011,655	+		HMPREF1058_RS08865	0.48	-0.4
1,012,044	+		HMPREF1058_RS08865	0.79	-0.9
1,012,044	+		HMPREF1058_RS08865	0.79	-0.2
1,012,045	-		HMPREF1058_RS08865	0.79	-2.6
1,012,046	+		HMPREF1058_RS08865	0.79	+0.9
1,012,046	+		HMPREF1058_RS08865	0.79	-1.0
1,012,047	-		HMPREF1058_RS08865	0.79	-1.1
1,012,048	+		HMPREF1058_RS08865	0.79	-0.3
1,012,048	+		HMPREF1058_RS08865	0.79	+0.7
1,012,049	-		HMPREF1058_RS08865	0.79	+0.4
1,012,049	-		HMPREF1058_RS08865	0.79	-1.0
1,012,049	-		HMPREF1058_RS08865	0.79	+0.1
1,012,049	-		HMPREF1058_RS08865	0.79	+0.6
1,012,113	-		HMPREF1058_RS08865	0.84	-0.1
1,012,286	+				-1.0
1,012,311	-				-0.7
1,012,346	-				-0.4
1,012,353	-				+0.2
1,012,382	+				-5.2
1,012,383	-				-1.2
1,012,449	+				-0.9
1,012,461	-				-3.4
1,012,551	+		HMPREF1058_RS08860	0.14	-4.2
1,012,655	-		HMPREF1058_RS08860	0.21	-3.2
1,012,728	+		HMPREF1058_RS08860	0.26	-4.4
1,013,001	+		HMPREF1058_RS08860	0.44	+0.1
1,013,002	-		HMPREF1058_RS08860	0.44	-3.5
1,013,004	-		HMPREF1058_RS08860	0.44	-2.7