Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08915

Experiment: L-Fucose 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS08920 and HMPREF1058_RS08915 are separated by 7 nucleotidesHMPREF1058_RS08915 and HMPREF1058_RS08910 are separated by 148 nucleotides HMPREF1058_RS08920: HMPREF1058_RS08920 - lytic transglycosylase domain-containing protein, at 993,999 to 994,997 _RS08920 HMPREF1058_RS08915: HMPREF1058_RS08915 - AraC family transcriptional regulator, at 995,005 to 995,925 _RS08915 HMPREF1058_RS08910: HMPREF1058_RS08910 - response regulator, at 996,074 to 1,000,234 _RS08910 Position (kb) 995 996Strain fitness (log2 ratio) -2 -1 0 1 2at 994.005 kb on + strandat 994.005 kb on + strandat 994.005 kb on + strandat 994.048 kb on + strandat 994.049 kb on - strandat 994.049 kb on - strandat 994.143 kb on + strand, within HMPREF1058_RS08920at 994.222 kb on + strand, within HMPREF1058_RS08920at 994.411 kb on + strand, within HMPREF1058_RS08920at 994.441 kb on + strand, within HMPREF1058_RS08920at 994.442 kb on - strand, within HMPREF1058_RS08920at 994.610 kb on + strand, within HMPREF1058_RS08920at 994.614 kb on - strand, within HMPREF1058_RS08920at 994.620 kb on + strand, within HMPREF1058_RS08920at 994.621 kb on - strand, within HMPREF1058_RS08920at 994.621 kb on - strand, within HMPREF1058_RS08920at 994.637 kb on + strand, within HMPREF1058_RS08920at 994.678 kb on - strand, within HMPREF1058_RS08920at 994.733 kb on + strand, within HMPREF1058_RS08920at 994.734 kb on - strand, within HMPREF1058_RS08920at 994.838 kb on + strand, within HMPREF1058_RS08920at 994.839 kb on - strand, within HMPREF1058_RS08920at 994.860 kb on - strand, within HMPREF1058_RS08920at 994.987 kb on - strandat 995.055 kb on - strandat 995.086 kb on - strandat 995.115 kb on + strand, within HMPREF1058_RS08915at 995.134 kb on + strand, within HMPREF1058_RS08915at 995.134 kb on + strand, within HMPREF1058_RS08915at 995.228 kb on + strand, within HMPREF1058_RS08915at 995.296 kb on + strand, within HMPREF1058_RS08915at 995.297 kb on - strand, within HMPREF1058_RS08915at 995.370 kb on - strand, within HMPREF1058_RS08915at 995.413 kb on + strand, within HMPREF1058_RS08915at 995.433 kb on - strand, within HMPREF1058_RS08915at 995.433 kb on - strand, within HMPREF1058_RS08915at 995.591 kb on + strand, within HMPREF1058_RS08915at 995.592 kb on - strand, within HMPREF1058_RS08915at 995.627 kb on + strand, within HMPREF1058_RS08915at 995.627 kb on + strand, within HMPREF1058_RS08915at 995.627 kb on + strand, within HMPREF1058_RS08915at 995.628 kb on - strand, within HMPREF1058_RS08915at 995.628 kb on - strand, within HMPREF1058_RS08915at 995.727 kb on + strand, within HMPREF1058_RS08915at 995.729 kb on + strand, within HMPREF1058_RS08915at 995.729 kb on + strand, within HMPREF1058_RS08915at 995.729 kb on + strand, within HMPREF1058_RS08915at 995.729 kb on + strand, within HMPREF1058_RS08915at 995.729 kb on + strand, within HMPREF1058_RS08915at 995.730 kb on - strand, within HMPREF1058_RS08915at 995.730 kb on - strand, within HMPREF1058_RS08915at 995.730 kb on - strand, within HMPREF1058_RS08915at 995.730 kb on - strand, within HMPREF1058_RS08915at 995.731 kb on + strand, within HMPREF1058_RS08915at 995.732 kb on - strand, within HMPREF1058_RS08915at 995.732 kb on - strand, within HMPREF1058_RS08915at 995.887 kb on + strandat 995.887 kb on + strandat 995.888 kb on - strandat 995.918 kb on + strandat 995.919 kb on - strandat 995.919 kb on - strandat 996.039 kb on - strandat 996.080 kb on + strandat 996.081 kb on - strandat 996.136 kb on + strandat 996.136 kb on + strandat 996.165 kb on - strandat 996.166 kb on + strandat 996.221 kb on - strandat 996.229 kb on + strandat 996.229 kb on + strandat 996.229 kb on + strandat 996.311 kb on + strandat 996.311 kb on + strandat 996.311 kb on + strandat 996.311 kb on + strandat 996.312 kb on - strandat 996.313 kb on + strandat 996.313 kb on + strandat 996.313 kb on + strandat 996.314 kb on - strandat 996.314 kb on - strandat 996.315 kb on + strandat 996.316 kb on - strandat 996.316 kb on - strandat 996.316 kb on - strandat 996.316 kb on - strandat 996.330 kb on - strandat 996.361 kb on + strandat 996.362 kb on - strandat 996.369 kb on + strandat 996.370 kb on - strandat 996.371 kb on + strandat 996.422 kb on - strandat 996.456 kb on + strandat 996.477 kb on - strandat 996.514 kb on - strand, within HMPREF1058_RS08910at 996.543 kb on + strand, within HMPREF1058_RS08910at 996.626 kb on - strand, within HMPREF1058_RS08910at 996.688 kb on - strand, within HMPREF1058_RS08910at 996.724 kb on + strand, within HMPREF1058_RS08910at 996.724 kb on + strand, within HMPREF1058_RS08910at 996.725 kb on - strand, within HMPREF1058_RS08910at 996.743 kb on + strand, within HMPREF1058_RS08910at 996.743 kb on + strand, within HMPREF1058_RS08910at 996.743 kb on + strand, within HMPREF1058_RS08910at 996.744 kb on - strand, within HMPREF1058_RS08910at 996.748 kb on + strand, within HMPREF1058_RS08910at 996.748 kb on + strand, within HMPREF1058_RS08910at 996.749 kb on - strand, within HMPREF1058_RS08910at 996.752 kb on + strand, within HMPREF1058_RS08910at 996.753 kb on - strand, within HMPREF1058_RS08910at 996.812 kb on - strand, within HMPREF1058_RS08910

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose 2.5 mg/ml (C)
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994,005 + -0.0
994,005 + +0.4
994,005 + -2.1
994,048 + -0.1
994,049 - +0.3
994,049 - -0.4
994,143 + HMPREF1058_RS08920 0.14 -0.1
994,222 + HMPREF1058_RS08920 0.22 +0.2
994,411 + HMPREF1058_RS08920 0.41 +0.9
994,441 + HMPREF1058_RS08920 0.44 -1.9
994,442 - HMPREF1058_RS08920 0.44 +1.4
994,610 + HMPREF1058_RS08920 0.61 +0.9
994,614 - HMPREF1058_RS08920 0.62 +0.0
994,620 + HMPREF1058_RS08920 0.62 -0.1
994,621 - HMPREF1058_RS08920 0.62 +0.4
994,621 - HMPREF1058_RS08920 0.62 +0.5
994,637 + HMPREF1058_RS08920 0.64 -0.7
994,678 - HMPREF1058_RS08920 0.68 -0.5
994,733 + HMPREF1058_RS08920 0.73 -0.3
994,734 - HMPREF1058_RS08920 0.74 +0.1
994,838 + HMPREF1058_RS08920 0.84 -0.3
994,839 - HMPREF1058_RS08920 0.84 -0.7
994,860 - HMPREF1058_RS08920 0.86 +0.2
994,987 - -0.1
995,055 - -0.5
995,086 - -0.4
995,115 + HMPREF1058_RS08915 0.12 -1.2
995,134 + HMPREF1058_RS08915 0.14 -0.2
995,134 + HMPREF1058_RS08915 0.14 +0.1
995,228 + HMPREF1058_RS08915 0.24 -1.4
995,296 + HMPREF1058_RS08915 0.32 -1.5
995,297 - HMPREF1058_RS08915 0.32 -0.6
995,370 - HMPREF1058_RS08915 0.40 +0.2
995,413 + HMPREF1058_RS08915 0.44 -0.8
995,433 - HMPREF1058_RS08915 0.46 -1.5
995,433 - HMPREF1058_RS08915 0.46 -0.6
995,591 + HMPREF1058_RS08915 0.64 -0.2
995,592 - HMPREF1058_RS08915 0.64 +1.4
995,627 + HMPREF1058_RS08915 0.68 +0.3
995,627 + HMPREF1058_RS08915 0.68 -0.7
995,627 + HMPREF1058_RS08915 0.68 +2.5
995,628 - HMPREF1058_RS08915 0.68 -0.4
995,628 - HMPREF1058_RS08915 0.68 -1.2
995,727 + HMPREF1058_RS08915 0.78 -0.6
995,729 + HMPREF1058_RS08915 0.79 -0.3
995,729 + HMPREF1058_RS08915 0.79 -1.0
995,729 + HMPREF1058_RS08915 0.79 -0.8
995,729 + HMPREF1058_RS08915 0.79 -1.1
995,729 + HMPREF1058_RS08915 0.79 -1.4
995,730 - HMPREF1058_RS08915 0.79 -1.7
995,730 - HMPREF1058_RS08915 0.79 -0.2
995,730 - HMPREF1058_RS08915 0.79 -2.5
995,730 - HMPREF1058_RS08915 0.79 -1.1
995,731 + HMPREF1058_RS08915 0.79 -0.3
995,732 - HMPREF1058_RS08915 0.79 -0.1
995,732 - HMPREF1058_RS08915 0.79 -1.2
995,887 + -1.8
995,887 + -0.4
995,888 - -0.6
995,918 + -0.4
995,919 - -0.3
995,919 - +0.4
996,039 - -1.2
996,080 + +1.0
996,081 - +0.0
996,136 + -1.1
996,136 + -0.5
996,165 - -0.2
996,166 + -0.2
996,221 - -2.2
996,229 + -1.4
996,229 + -0.1
996,229 + -2.3
996,311 + +0.3
996,311 + +0.6
996,311 + +0.1
996,311 + +1.9
996,312 - -0.0
996,313 + -0.0
996,313 + -2.4
996,313 + -0.8
996,314 - +0.5
996,314 - -0.2
996,315 + -0.3
996,316 - +0.2
996,316 - -0.4
996,316 - -0.5
996,316 - -0.1
996,330 - -0.2
996,361 + +0.7
996,362 - +0.3
996,369 + +0.7
996,370 - +0.8
996,371 + -0.5
996,422 - +0.2
996,456 + +0.3
996,477 - +0.4
996,514 - HMPREF1058_RS08910 0.11 +0.9
996,543 + HMPREF1058_RS08910 0.11 -0.4
996,626 - HMPREF1058_RS08910 0.13 -0.1
996,688 - HMPREF1058_RS08910 0.15 +0.9
996,724 + HMPREF1058_RS08910 0.16 +0.4
996,724 + HMPREF1058_RS08910 0.16 +0.9
996,725 - HMPREF1058_RS08910 0.16 -0.7
996,743 + HMPREF1058_RS08910 0.16 +0.3
996,743 + HMPREF1058_RS08910 0.16 +1.1
996,743 + HMPREF1058_RS08910 0.16 -1.1
996,744 - HMPREF1058_RS08910 0.16 +0.1
996,748 + HMPREF1058_RS08910 0.16 -1.1
996,748 + HMPREF1058_RS08910 0.16 -0.6
996,749 - HMPREF1058_RS08910 0.16 +0.3
996,752 + HMPREF1058_RS08910 0.16 -0.8
996,753 - HMPREF1058_RS08910 0.16 -0.2
996,812 - HMPREF1058_RS08910 0.18 -0.6

Or see this region's nucleotide sequence