Experiment: L-Fucose 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08920 and HMPREF1058_RS08915 are separated by 7 nucleotides HMPREF1058_RS08915 and HMPREF1058_RS08910 are separated by 148 nucleotides
HMPREF1058_RS08920: HMPREF1058_RS08920 - lytic transglycosylase domain-containing protein, at 993,999 to 994,997
_RS08920
HMPREF1058_RS08915: HMPREF1058_RS08915 - AraC family transcriptional regulator, at 995,005 to 995,925
_RS08915
HMPREF1058_RS08910: HMPREF1058_RS08910 - response regulator, at 996,074 to 1,000,234
_RS08910
Position (kb)
995
996 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 994.005 kb on + strand at 994.005 kb on + strand at 994.005 kb on + strand at 994.048 kb on + strand at 994.049 kb on - strand at 994.049 kb on - strand at 994.143 kb on + strand, within HMPREF1058_RS08920 at 994.222 kb on + strand, within HMPREF1058_RS08920 at 994.411 kb on + strand, within HMPREF1058_RS08920 at 994.441 kb on + strand, within HMPREF1058_RS08920 at 994.442 kb on - strand, within HMPREF1058_RS08920 at 994.610 kb on + strand, within HMPREF1058_RS08920 at 994.614 kb on - strand, within HMPREF1058_RS08920 at 994.620 kb on + strand, within HMPREF1058_RS08920 at 994.621 kb on - strand, within HMPREF1058_RS08920 at 994.621 kb on - strand, within HMPREF1058_RS08920 at 994.637 kb on + strand, within HMPREF1058_RS08920 at 994.678 kb on - strand, within HMPREF1058_RS08920 at 994.733 kb on + strand, within HMPREF1058_RS08920 at 994.734 kb on - strand, within HMPREF1058_RS08920 at 994.838 kb on + strand, within HMPREF1058_RS08920 at 994.839 kb on - strand, within HMPREF1058_RS08920 at 994.860 kb on - strand, within HMPREF1058_RS08920 at 994.987 kb on - strand at 995.055 kb on - strand at 995.086 kb on - strand at 995.115 kb on + strand, within HMPREF1058_RS08915 at 995.134 kb on + strand, within HMPREF1058_RS08915 at 995.134 kb on + strand, within HMPREF1058_RS08915 at 995.228 kb on + strand, within HMPREF1058_RS08915 at 995.296 kb on + strand, within HMPREF1058_RS08915 at 995.297 kb on - strand, within HMPREF1058_RS08915 at 995.370 kb on - strand, within HMPREF1058_RS08915 at 995.413 kb on + strand, within HMPREF1058_RS08915 at 995.433 kb on - strand, within HMPREF1058_RS08915 at 995.433 kb on - strand, within HMPREF1058_RS08915 at 995.591 kb on + strand, within HMPREF1058_RS08915 at 995.592 kb on - strand, within HMPREF1058_RS08915 at 995.627 kb on + strand, within HMPREF1058_RS08915 at 995.627 kb on + strand, within HMPREF1058_RS08915 at 995.627 kb on + strand, within HMPREF1058_RS08915 at 995.628 kb on - strand, within HMPREF1058_RS08915 at 995.628 kb on - strand, within HMPREF1058_RS08915 at 995.727 kb on + strand, within HMPREF1058_RS08915 at 995.729 kb on + strand, within HMPREF1058_RS08915 at 995.729 kb on + strand, within HMPREF1058_RS08915 at 995.729 kb on + strand, within HMPREF1058_RS08915 at 995.729 kb on + strand, within HMPREF1058_RS08915 at 995.729 kb on + strand, within HMPREF1058_RS08915 at 995.730 kb on - strand, within HMPREF1058_RS08915 at 995.730 kb on - strand, within HMPREF1058_RS08915 at 995.730 kb on - strand, within HMPREF1058_RS08915 at 995.730 kb on - strand, within HMPREF1058_RS08915 at 995.731 kb on + strand, within HMPREF1058_RS08915 at 995.732 kb on - strand, within HMPREF1058_RS08915 at 995.732 kb on - strand, within HMPREF1058_RS08915 at 995.887 kb on + strand at 995.887 kb on + strand at 995.888 kb on - strand at 995.918 kb on + strand at 995.919 kb on - strand at 995.919 kb on - strand at 996.039 kb on - strand at 996.080 kb on + strand at 996.081 kb on - strand at 996.136 kb on + strand at 996.136 kb on + strand at 996.165 kb on - strand at 996.166 kb on + strand at 996.221 kb on - strand at 996.229 kb on + strand at 996.229 kb on + strand at 996.229 kb on + strand at 996.311 kb on + strand at 996.311 kb on + strand at 996.311 kb on + strand at 996.311 kb on + strand at 996.312 kb on - strand at 996.313 kb on + strand at 996.313 kb on + strand at 996.313 kb on + strand at 996.314 kb on - strand at 996.314 kb on - strand at 996.315 kb on + strand at 996.316 kb on - strand at 996.316 kb on - strand at 996.316 kb on - strand at 996.316 kb on - strand at 996.330 kb on - strand at 996.361 kb on + strand at 996.362 kb on - strand at 996.369 kb on + strand at 996.370 kb on - strand at 996.371 kb on + strand at 996.422 kb on - strand at 996.456 kb on + strand at 996.477 kb on - strand at 996.514 kb on - strand, within HMPREF1058_RS08910 at 996.543 kb on + strand, within HMPREF1058_RS08910 at 996.626 kb on - strand, within HMPREF1058_RS08910 at 996.688 kb on - strand, within HMPREF1058_RS08910 at 996.724 kb on + strand, within HMPREF1058_RS08910 at 996.724 kb on + strand, within HMPREF1058_RS08910 at 996.725 kb on - strand, within HMPREF1058_RS08910 at 996.743 kb on + strand, within HMPREF1058_RS08910 at 996.743 kb on + strand, within HMPREF1058_RS08910 at 996.743 kb on + strand, within HMPREF1058_RS08910 at 996.744 kb on - strand, within HMPREF1058_RS08910 at 996.748 kb on + strand, within HMPREF1058_RS08910 at 996.748 kb on + strand, within HMPREF1058_RS08910 at 996.749 kb on - strand, within HMPREF1058_RS08910 at 996.752 kb on + strand, within HMPREF1058_RS08910 at 996.753 kb on - strand, within HMPREF1058_RS08910 at 996.812 kb on - strand, within HMPREF1058_RS08910
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose 2.5 mg/ml (C) remove 994,005 + -0.0 994,005 + +0.4 994,005 + -2.1 994,048 + -0.1 994,049 - +0.3 994,049 - -0.4 994,143 + HMPREF1058_RS08920 0.14 -0.1 994,222 + HMPREF1058_RS08920 0.22 +0.2 994,411 + HMPREF1058_RS08920 0.41 +0.9 994,441 + HMPREF1058_RS08920 0.44 -1.9 994,442 - HMPREF1058_RS08920 0.44 +1.4 994,610 + HMPREF1058_RS08920 0.61 +0.9 994,614 - HMPREF1058_RS08920 0.62 +0.0 994,620 + HMPREF1058_RS08920 0.62 -0.1 994,621 - HMPREF1058_RS08920 0.62 +0.4 994,621 - HMPREF1058_RS08920 0.62 +0.5 994,637 + HMPREF1058_RS08920 0.64 -0.7 994,678 - HMPREF1058_RS08920 0.68 -0.5 994,733 + HMPREF1058_RS08920 0.73 -0.3 994,734 - HMPREF1058_RS08920 0.74 +0.1 994,838 + HMPREF1058_RS08920 0.84 -0.3 994,839 - HMPREF1058_RS08920 0.84 -0.7 994,860 - HMPREF1058_RS08920 0.86 +0.2 994,987 - -0.1 995,055 - -0.5 995,086 - -0.4 995,115 + HMPREF1058_RS08915 0.12 -1.2 995,134 + HMPREF1058_RS08915 0.14 -0.2 995,134 + HMPREF1058_RS08915 0.14 +0.1 995,228 + HMPREF1058_RS08915 0.24 -1.4 995,296 + HMPREF1058_RS08915 0.32 -1.5 995,297 - HMPREF1058_RS08915 0.32 -0.6 995,370 - HMPREF1058_RS08915 0.40 +0.2 995,413 + HMPREF1058_RS08915 0.44 -0.8 995,433 - HMPREF1058_RS08915 0.46 -1.5 995,433 - HMPREF1058_RS08915 0.46 -0.6 995,591 + HMPREF1058_RS08915 0.64 -0.2 995,592 - HMPREF1058_RS08915 0.64 +1.4 995,627 + HMPREF1058_RS08915 0.68 +0.3 995,627 + HMPREF1058_RS08915 0.68 -0.7 995,627 + HMPREF1058_RS08915 0.68 +2.5 995,628 - HMPREF1058_RS08915 0.68 -0.4 995,628 - HMPREF1058_RS08915 0.68 -1.2 995,727 + HMPREF1058_RS08915 0.78 -0.6 995,729 + HMPREF1058_RS08915 0.79 -0.3 995,729 + HMPREF1058_RS08915 0.79 -1.0 995,729 + HMPREF1058_RS08915 0.79 -0.8 995,729 + HMPREF1058_RS08915 0.79 -1.1 995,729 + HMPREF1058_RS08915 0.79 -1.4 995,730 - HMPREF1058_RS08915 0.79 -1.7 995,730 - HMPREF1058_RS08915 0.79 -0.2 995,730 - HMPREF1058_RS08915 0.79 -2.5 995,730 - HMPREF1058_RS08915 0.79 -1.1 995,731 + HMPREF1058_RS08915 0.79 -0.3 995,732 - HMPREF1058_RS08915 0.79 -0.1 995,732 - HMPREF1058_RS08915 0.79 -1.2 995,887 + -1.8 995,887 + -0.4 995,888 - -0.6 995,918 + -0.4 995,919 - -0.3 995,919 - +0.4 996,039 - -1.2 996,080 + +1.0 996,081 - +0.0 996,136 + -1.1 996,136 + -0.5 996,165 - -0.2 996,166 + -0.2 996,221 - -2.2 996,229 + -1.4 996,229 + -0.1 996,229 + -2.3 996,311 + +0.3 996,311 + +0.6 996,311 + +0.1 996,311 + +1.9 996,312 - -0.0 996,313 + -0.0 996,313 + -2.4 996,313 + -0.8 996,314 - +0.5 996,314 - -0.2 996,315 + -0.3 996,316 - +0.2 996,316 - -0.4 996,316 - -0.5 996,316 - -0.1 996,330 - -0.2 996,361 + +0.7 996,362 - +0.3 996,369 + +0.7 996,370 - +0.8 996,371 + -0.5 996,422 - +0.2 996,456 + +0.3 996,477 - +0.4 996,514 - HMPREF1058_RS08910 0.11 +0.9 996,543 + HMPREF1058_RS08910 0.11 -0.4 996,626 - HMPREF1058_RS08910 0.13 -0.1 996,688 - HMPREF1058_RS08910 0.15 +0.9 996,724 + HMPREF1058_RS08910 0.16 +0.4 996,724 + HMPREF1058_RS08910 0.16 +0.9 996,725 - HMPREF1058_RS08910 0.16 -0.7 996,743 + HMPREF1058_RS08910 0.16 +0.3 996,743 + HMPREF1058_RS08910 0.16 +1.1 996,743 + HMPREF1058_RS08910 0.16 -1.1 996,744 - HMPREF1058_RS08910 0.16 +0.1 996,748 + HMPREF1058_RS08910 0.16 -1.1 996,748 + HMPREF1058_RS08910 0.16 -0.6 996,749 - HMPREF1058_RS08910 0.16 +0.3 996,752 + HMPREF1058_RS08910 0.16 -0.8 996,753 - HMPREF1058_RS08910 0.16 -0.2 996,812 - HMPREF1058_RS08910 0.18 -0.6
Or see this region's nucleotide sequence