Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15310

Experiment: D-Glucosamine Hydrochloride 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS15315 and HMPREF1058_RS15310 are separated by 145 nucleotidesHMPREF1058_RS15310 and HMPREF1058_RS15305 are separated by 95 nucleotides HMPREF1058_RS15315: HMPREF1058_RS15315 - FimB/Mfa2 family fimbrial subunit, at 953,209 to 954,177 _RS15315 HMPREF1058_RS15310: HMPREF1058_RS15310 - Mfa1 family fimbria major subunit, at 954,323 to 955,858 _RS15310 HMPREF1058_RS15305: HMPREF1058_RS15305 - hypothetical protein, at 955,954 to 957,402 _RS15305 Position (kb) 954 955 956Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 953.338 kb on - strandat 953.434 kb on + strand, within HMPREF1058_RS15315at 953.556 kb on + strand, within HMPREF1058_RS15315at 953.565 kb on - strand, within HMPREF1058_RS15315at 953.627 kb on - strand, within HMPREF1058_RS15315at 953.744 kb on + strand, within HMPREF1058_RS15315at 953.846 kb on + strand, within HMPREF1058_RS15315at 954.112 kb on - strandat 954.112 kb on - strandat 954.118 kb on + strandat 954.119 kb on - strandat 954.119 kb on - strandat 954.155 kb on + strandat 954.155 kb on + strandat 954.156 kb on - strandat 954.156 kb on - strandat 954.156 kb on - strandat 954.184 kb on + strandat 954.204 kb on + strandat 954.222 kb on + strandat 954.276 kb on + strandat 954.277 kb on - strandat 954.280 kb on + strandat 954.288 kb on + strandat 954.290 kb on + strandat 954.325 kb on - strandat 954.387 kb on + strandat 954.388 kb on - strandat 954.528 kb on + strand, within HMPREF1058_RS15310at 954.529 kb on - strand, within HMPREF1058_RS15310at 954.533 kb on - strand, within HMPREF1058_RS15310at 954.538 kb on + strand, within HMPREF1058_RS15310at 954.631 kb on - strand, within HMPREF1058_RS15310at 954.631 kb on - strand, within HMPREF1058_RS15310at 954.634 kb on + strand, within HMPREF1058_RS15310at 954.635 kb on - strand, within HMPREF1058_RS15310at 954.635 kb on - strand, within HMPREF1058_RS15310at 954.635 kb on - strand, within HMPREF1058_RS15310at 954.636 kb on + strand, within HMPREF1058_RS15310at 954.690 kb on + strand, within HMPREF1058_RS15310at 954.694 kb on + strand, within HMPREF1058_RS15310at 954.737 kb on - strand, within HMPREF1058_RS15310at 954.739 kb on - strand, within HMPREF1058_RS15310at 954.801 kb on + strand, within HMPREF1058_RS15310at 954.801 kb on + strand, within HMPREF1058_RS15310at 954.802 kb on - strand, within HMPREF1058_RS15310at 954.802 kb on - strand, within HMPREF1058_RS15310at 954.802 kb on - strand, within HMPREF1058_RS15310at 954.834 kb on + strand, within HMPREF1058_RS15310at 954.862 kb on + strand, within HMPREF1058_RS15310at 954.954 kb on + strand, within HMPREF1058_RS15310at 954.954 kb on + strand, within HMPREF1058_RS15310at 954.954 kb on + strand, within HMPREF1058_RS15310at 955.063 kb on + strand, within HMPREF1058_RS15310at 955.064 kb on - strand, within HMPREF1058_RS15310at 955.096 kb on - strand, within HMPREF1058_RS15310at 955.121 kb on - strand, within HMPREF1058_RS15310at 955.149 kb on + strand, within HMPREF1058_RS15310at 955.150 kb on - strand, within HMPREF1058_RS15310at 955.150 kb on - strand, within HMPREF1058_RS15310at 955.150 kb on - strand, within HMPREF1058_RS15310at 955.179 kb on + strand, within HMPREF1058_RS15310at 955.440 kb on + strand, within HMPREF1058_RS15310at 955.440 kb on + strand, within HMPREF1058_RS15310at 955.441 kb on - strand, within HMPREF1058_RS15310at 955.654 kb on + strand, within HMPREF1058_RS15310at 955.732 kb on + strandat 955.795 kb on + strandat 955.818 kb on - strandat 955.873 kb on - strandat 955.899 kb on - strandat 955.914 kb on + strandat 955.914 kb on + strandat 956.016 kb on + strandat 956.020 kb on - strandat 956.063 kb on - strandat 956.105 kb on + strand, within HMPREF1058_RS15305at 956.106 kb on - strand, within HMPREF1058_RS15305at 956.110 kb on + strand, within HMPREF1058_RS15305at 956.110 kb on + strand, within HMPREF1058_RS15305at 956.127 kb on - strand, within HMPREF1058_RS15305at 956.177 kb on + strand, within HMPREF1058_RS15305at 956.177 kb on + strand, within HMPREF1058_RS15305at 956.178 kb on - strand, within HMPREF1058_RS15305at 956.178 kb on - strand, within HMPREF1058_RS15305at 956.179 kb on + strand, within HMPREF1058_RS15305at 956.210 kb on + strand, within HMPREF1058_RS15305at 956.229 kb on - strand, within HMPREF1058_RS15305at 956.262 kb on + strand, within HMPREF1058_RS15305at 956.387 kb on - strand, within HMPREF1058_RS15305at 956.430 kb on + strand, within HMPREF1058_RS15305at 956.431 kb on - strand, within HMPREF1058_RS15305at 956.458 kb on - strand, within HMPREF1058_RS15305at 956.458 kb on - strand, within HMPREF1058_RS15305at 956.460 kb on - strand, within HMPREF1058_RS15305at 956.474 kb on - strand, within HMPREF1058_RS15305at 956.560 kb on - strand, within HMPREF1058_RS15305at 956.566 kb on + strand, within HMPREF1058_RS15305at 956.571 kb on - strand, within HMPREF1058_RS15305at 956.574 kb on - strand, within HMPREF1058_RS15305at 956.584 kb on - strand, within HMPREF1058_RS15305at 956.652 kb on + strand, within HMPREF1058_RS15305at 956.652 kb on + strand, within HMPREF1058_RS15305at 956.652 kb on + strand, within HMPREF1058_RS15305at 956.652 kb on + strand, within HMPREF1058_RS15305at 956.653 kb on - strand, within HMPREF1058_RS15305at 956.653 kb on - strand, within HMPREF1058_RS15305at 956.653 kb on - strand, within HMPREF1058_RS15305at 956.656 kb on + strand, within HMPREF1058_RS15305at 956.784 kb on + strand, within HMPREF1058_RS15305at 956.785 kb on - strand, within HMPREF1058_RS15305at 956.844 kb on - strand, within HMPREF1058_RS15305at 956.848 kb on - strand, within HMPREF1058_RS15305at 956.848 kb on - strand, within HMPREF1058_RS15305

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 2.5 mg/ml (C)
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953,338 - +0.7
953,434 + HMPREF1058_RS15315 0.23 -1.8
953,556 + HMPREF1058_RS15315 0.36 +0.4
953,565 - HMPREF1058_RS15315 0.37 +2.1
953,627 - HMPREF1058_RS15315 0.43 +2.1
953,744 + HMPREF1058_RS15315 0.55 +0.4
953,846 + HMPREF1058_RS15315 0.66 -0.7
954,112 - +2.4
954,112 - +1.4
954,118 + -1.1
954,119 - +2.0
954,119 - +4.4
954,155 + -0.8
954,155 + -0.5
954,156 - +1.6
954,156 - +1.1
954,156 - +2.9
954,184 + -0.4
954,204 + -1.4
954,222 + -0.9
954,276 + -0.3
954,277 - +1.4
954,280 + +1.4
954,288 + -1.1
954,290 + +0.8
954,325 - +2.0
954,387 + -1.1
954,388 - +1.8
954,528 + HMPREF1058_RS15310 0.13 -1.0
954,529 - HMPREF1058_RS15310 0.13 +1.1
954,533 - HMPREF1058_RS15310 0.14 +1.6
954,538 + HMPREF1058_RS15310 0.14 -0.5
954,631 - HMPREF1058_RS15310 0.20 +1.8
954,631 - HMPREF1058_RS15310 0.20 +1.8
954,634 + HMPREF1058_RS15310 0.20 +0.6
954,635 - HMPREF1058_RS15310 0.20 +2.1
954,635 - HMPREF1058_RS15310 0.20 +0.6
954,635 - HMPREF1058_RS15310 0.20 +0.2
954,636 + HMPREF1058_RS15310 0.20 +0.7
954,690 + HMPREF1058_RS15310 0.24 -0.3
954,694 + HMPREF1058_RS15310 0.24 -0.2
954,737 - HMPREF1058_RS15310 0.27 +0.5
954,739 - HMPREF1058_RS15310 0.27 +0.7
954,801 + HMPREF1058_RS15310 0.31 -0.1
954,801 + HMPREF1058_RS15310 0.31 -0.6
954,802 - HMPREF1058_RS15310 0.31 +2.0
954,802 - HMPREF1058_RS15310 0.31 +2.3
954,802 - HMPREF1058_RS15310 0.31 +2.1
954,834 + HMPREF1058_RS15310 0.33 -0.6
954,862 + HMPREF1058_RS15310 0.35 +2.1
954,954 + HMPREF1058_RS15310 0.41 -0.4
954,954 + HMPREF1058_RS15310 0.41 -0.2
954,954 + HMPREF1058_RS15310 0.41 +0.0
955,063 + HMPREF1058_RS15310 0.48 +0.3
955,064 - HMPREF1058_RS15310 0.48 +1.0
955,096 - HMPREF1058_RS15310 0.50 -0.5
955,121 - HMPREF1058_RS15310 0.52 +1.1
955,149 + HMPREF1058_RS15310 0.54 -1.2
955,150 - HMPREF1058_RS15310 0.54 +1.1
955,150 - HMPREF1058_RS15310 0.54 +2.7
955,150 - HMPREF1058_RS15310 0.54 +2.0
955,179 + HMPREF1058_RS15310 0.56 -0.2
955,440 + HMPREF1058_RS15310 0.73 -1.3
955,440 + HMPREF1058_RS15310 0.73 -1.4
955,441 - HMPREF1058_RS15310 0.73 +1.6
955,654 + HMPREF1058_RS15310 0.87 -0.1
955,732 + -0.7
955,795 + -1.2
955,818 - +0.3
955,873 - +2.3
955,899 - +1.2
955,914 + -0.4
955,914 + +2.1
956,016 + +1.4
956,020 - -0.2
956,063 - +0.4
956,105 + HMPREF1058_RS15305 0.10 -0.4
956,106 - HMPREF1058_RS15305 0.10 -0.1
956,110 + HMPREF1058_RS15305 0.11 +0.7
956,110 + HMPREF1058_RS15305 0.11 -1.2
956,127 - HMPREF1058_RS15305 0.12 -0.6
956,177 + HMPREF1058_RS15305 0.15 -0.0
956,177 + HMPREF1058_RS15305 0.15 +0.7
956,178 - HMPREF1058_RS15305 0.15 +1.1
956,178 - HMPREF1058_RS15305 0.15 -1.2
956,179 + HMPREF1058_RS15305 0.16 -0.3
956,210 + HMPREF1058_RS15305 0.18 +1.8
956,229 - HMPREF1058_RS15305 0.19 -0.6
956,262 + HMPREF1058_RS15305 0.21 -0.5
956,387 - HMPREF1058_RS15305 0.30 +0.8
956,430 + HMPREF1058_RS15305 0.33 +0.5
956,431 - HMPREF1058_RS15305 0.33 +0.9
956,458 - HMPREF1058_RS15305 0.35 +0.6
956,458 - HMPREF1058_RS15305 0.35 -0.1
956,460 - HMPREF1058_RS15305 0.35 +0.1
956,474 - HMPREF1058_RS15305 0.36 +0.5
956,560 - HMPREF1058_RS15305 0.42 +0.7
956,566 + HMPREF1058_RS15305 0.42 -0.2
956,571 - HMPREF1058_RS15305 0.43 -0.1
956,574 - HMPREF1058_RS15305 0.43 +1.3
956,584 - HMPREF1058_RS15305 0.43 +0.7
956,652 + HMPREF1058_RS15305 0.48 +1.5
956,652 + HMPREF1058_RS15305 0.48 +0.2
956,652 + HMPREF1058_RS15305 0.48 -0.6
956,652 + HMPREF1058_RS15305 0.48 +0.3
956,653 - HMPREF1058_RS15305 0.48 +1.1
956,653 - HMPREF1058_RS15305 0.48 -0.3
956,653 - HMPREF1058_RS15305 0.48 +1.0
956,656 + HMPREF1058_RS15305 0.48 -0.4
956,784 + HMPREF1058_RS15305 0.57 -0.1
956,785 - HMPREF1058_RS15305 0.57 +1.2
956,844 - HMPREF1058_RS15305 0.61 -0.4
956,848 - HMPREF1058_RS15305 0.62 +0.7
956,848 - HMPREF1058_RS15305 0.62 +1.8

Or see this region's nucleotide sequence