Experiment: a-Cyclodextrin 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02995 and HMPREF1058_RS02990 are separated by 36 nucleotides HMPREF1058_RS02990 and HMPREF1058_RS02985 are separated by 4 nucleotides HMPREF1058_RS02985 and HMPREF1058_RS02980 are separated by 17 nucleotides
HMPREF1058_RS02995: HMPREF1058_RS02995 - peptidylprolyl isomerase, at 36,052 to 37,389
_RS02995
HMPREF1058_RS02990: HMPREF1058_RS02990 - peptidyl-prolyl cis-trans isomerase, at 37,426 to 38,298
_RS02990
HMPREF1058_RS02985: HMPREF1058_RS02985 - peptidylprolyl isomerase, at 38,303 to 39,661
_RS02985
HMPREF1058_RS02980: HMPREF1058_RS02980 - hypothetical protein, at 39,679 to 41,346
_RS02980
Position (kb) 38
39
40 Strain fitness (log2 ratio) -2
-1
0
1 at 37.330 kb on + strand at 37.332 kb on + strand at 37.371 kb on + strand at 37.391 kb on + strand at 37.425 kb on + strand at 37.463 kb on + strand at 37.540 kb on + strand, within HMPREF1058_RS02990 at 37.540 kb on + strand, within HMPREF1058_RS02990 at 37.546 kb on + strand, within HMPREF1058_RS02990 at 37.548 kb on + strand, within HMPREF1058_RS02990 at 37.618 kb on + strand, within HMPREF1058_RS02990 at 37.734 kb on + strand, within HMPREF1058_RS02990 at 37.734 kb on + strand, within HMPREF1058_RS02990 at 37.778 kb on + strand, within HMPREF1058_RS02990 at 37.830 kb on + strand, within HMPREF1058_RS02990 at 37.932 kb on + strand, within HMPREF1058_RS02990 at 37.981 kb on + strand, within HMPREF1058_RS02990 at 38.220 kb on + strand at 39.664 kb on + strand at 39.669 kb on + strand at 39.669 kb on + strand at 39.669 kb on + strand at 39.669 kb on + strand at 39.678 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/ml (C) remove 37,330 + +0.7 37,332 + +1.3 37,371 + +0.3 37,391 + +0.1 37,425 + +1.2 37,463 + -0.2 37,540 + HMPREF1058_RS02990 0.13 -0.2 37,540 + HMPREF1058_RS02990 0.13 -0.1 37,546 + HMPREF1058_RS02990 0.14 -0.1 37,548 + HMPREF1058_RS02990 0.14 +0.6 37,618 + HMPREF1058_RS02990 0.22 +0.1 37,734 + HMPREF1058_RS02990 0.35 -0.6 37,734 + HMPREF1058_RS02990 0.35 +0.5 37,778 + HMPREF1058_RS02990 0.40 -0.1 37,830 + HMPREF1058_RS02990 0.46 +1.3 37,932 + HMPREF1058_RS02990 0.58 +0.3 37,981 + HMPREF1058_RS02990 0.64 -0.5 38,220 + +0.2 39,664 + -0.6 39,669 + +0.8 39,669 + +0.6 39,669 + +0.9 39,669 + +0.0 39,678 + -1.9
Or see this region's nucleotide sequence