Experiment: polygalacturonic; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15315 and HMPREF1058_RS15310 are separated by 145 nucleotides HMPREF1058_RS15310 and HMPREF1058_RS15305 are separated by 95 nucleotides
HMPREF1058_RS15315: HMPREF1058_RS15315 - FimB/Mfa2 family fimbrial subunit, at 953,209 to 954,177
_RS15315
HMPREF1058_RS15310: HMPREF1058_RS15310 - Mfa1 family fimbria major subunit, at 954,323 to 955,858
_RS15310
HMPREF1058_RS15305: HMPREF1058_RS15305 - hypothetical protein, at 955,954 to 957,402
_RS15305
Position (kb) 954
955
956 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 953.338 kb on - strand at 953.434 kb on + strand, within HMPREF1058_RS15315 at 953.556 kb on + strand, within HMPREF1058_RS15315 at 953.565 kb on - strand, within HMPREF1058_RS15315 at 953.627 kb on - strand, within HMPREF1058_RS15315 at 953.744 kb on + strand, within HMPREF1058_RS15315 at 953.846 kb on + strand, within HMPREF1058_RS15315 at 954.112 kb on - strand at 954.112 kb on - strand at 954.118 kb on + strand at 954.119 kb on - strand at 954.119 kb on - strand at 954.155 kb on + strand at 954.155 kb on + strand at 954.156 kb on - strand at 954.156 kb on - strand at 954.156 kb on - strand at 954.184 kb on + strand at 954.204 kb on + strand at 954.222 kb on + strand at 954.276 kb on + strand at 954.277 kb on - strand at 954.280 kb on + strand at 954.288 kb on + strand at 954.290 kb on + strand at 954.325 kb on - strand at 954.387 kb on + strand at 954.388 kb on - strand at 954.528 kb on + strand, within HMPREF1058_RS15310 at 954.529 kb on - strand, within HMPREF1058_RS15310 at 954.533 kb on - strand, within HMPREF1058_RS15310 at 954.538 kb on + strand, within HMPREF1058_RS15310 at 954.631 kb on - strand, within HMPREF1058_RS15310 at 954.631 kb on - strand, within HMPREF1058_RS15310 at 954.634 kb on + strand, within HMPREF1058_RS15310 at 954.635 kb on - strand, within HMPREF1058_RS15310 at 954.635 kb on - strand, within HMPREF1058_RS15310 at 954.635 kb on - strand, within HMPREF1058_RS15310 at 954.636 kb on + strand, within HMPREF1058_RS15310 at 954.690 kb on + strand, within HMPREF1058_RS15310 at 954.694 kb on + strand, within HMPREF1058_RS15310 at 954.737 kb on - strand, within HMPREF1058_RS15310 at 954.739 kb on - strand, within HMPREF1058_RS15310 at 954.801 kb on + strand, within HMPREF1058_RS15310 at 954.801 kb on + strand, within HMPREF1058_RS15310 at 954.802 kb on - strand, within HMPREF1058_RS15310 at 954.802 kb on - strand, within HMPREF1058_RS15310 at 954.802 kb on - strand, within HMPREF1058_RS15310 at 954.834 kb on + strand, within HMPREF1058_RS15310 at 954.862 kb on + strand, within HMPREF1058_RS15310 at 954.954 kb on + strand, within HMPREF1058_RS15310 at 954.954 kb on + strand, within HMPREF1058_RS15310 at 954.954 kb on + strand, within HMPREF1058_RS15310 at 955.063 kb on + strand, within HMPREF1058_RS15310 at 955.064 kb on - strand, within HMPREF1058_RS15310 at 955.096 kb on - strand, within HMPREF1058_RS15310 at 955.121 kb on - strand, within HMPREF1058_RS15310 at 955.149 kb on + strand, within HMPREF1058_RS15310 at 955.150 kb on - strand, within HMPREF1058_RS15310 at 955.150 kb on - strand, within HMPREF1058_RS15310 at 955.150 kb on - strand, within HMPREF1058_RS15310 at 955.179 kb on + strand, within HMPREF1058_RS15310 at 955.440 kb on + strand, within HMPREF1058_RS15310 at 955.440 kb on + strand, within HMPREF1058_RS15310 at 955.441 kb on - strand, within HMPREF1058_RS15310 at 955.654 kb on + strand, within HMPREF1058_RS15310 at 955.732 kb on + strand at 955.795 kb on + strand at 955.818 kb on - strand at 955.873 kb on - strand at 955.899 kb on - strand at 955.914 kb on + strand at 955.914 kb on + strand at 956.016 kb on + strand at 956.020 kb on - strand at 956.063 kb on - strand at 956.105 kb on + strand, within HMPREF1058_RS15305 at 956.106 kb on - strand, within HMPREF1058_RS15305 at 956.110 kb on + strand, within HMPREF1058_RS15305 at 956.110 kb on + strand, within HMPREF1058_RS15305 at 956.127 kb on - strand, within HMPREF1058_RS15305 at 956.177 kb on + strand, within HMPREF1058_RS15305 at 956.177 kb on + strand, within HMPREF1058_RS15305 at 956.178 kb on - strand, within HMPREF1058_RS15305 at 956.178 kb on - strand, within HMPREF1058_RS15305 at 956.179 kb on + strand, within HMPREF1058_RS15305 at 956.210 kb on + strand, within HMPREF1058_RS15305 at 956.229 kb on - strand, within HMPREF1058_RS15305 at 956.262 kb on + strand, within HMPREF1058_RS15305 at 956.387 kb on - strand, within HMPREF1058_RS15305 at 956.430 kb on + strand, within HMPREF1058_RS15305 at 956.431 kb on - strand, within HMPREF1058_RS15305 at 956.458 kb on - strand, within HMPREF1058_RS15305 at 956.458 kb on - strand, within HMPREF1058_RS15305 at 956.460 kb on - strand, within HMPREF1058_RS15305 at 956.474 kb on - strand, within HMPREF1058_RS15305 at 956.560 kb on - strand, within HMPREF1058_RS15305 at 956.566 kb on + strand, within HMPREF1058_RS15305 at 956.571 kb on - strand, within HMPREF1058_RS15305 at 956.574 kb on - strand, within HMPREF1058_RS15305 at 956.584 kb on - strand, within HMPREF1058_RS15305 at 956.652 kb on + strand, within HMPREF1058_RS15305 at 956.652 kb on + strand, within HMPREF1058_RS15305 at 956.652 kb on + strand, within HMPREF1058_RS15305 at 956.652 kb on + strand, within HMPREF1058_RS15305 at 956.653 kb on - strand, within HMPREF1058_RS15305 at 956.653 kb on - strand, within HMPREF1058_RS15305 at 956.653 kb on - strand, within HMPREF1058_RS15305 at 956.656 kb on + strand, within HMPREF1058_RS15305 at 956.784 kb on + strand, within HMPREF1058_RS15305 at 956.785 kb on - strand, within HMPREF1058_RS15305 at 956.844 kb on - strand, within HMPREF1058_RS15305 at 956.848 kb on - strand, within HMPREF1058_RS15305 at 956.848 kb on - strand, within HMPREF1058_RS15305
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic; autoclaved 2.5 mg/ml (C) remove 953,338 - -0.2 953,434 + HMPREF1058_RS15315 0.23 -0.5 953,556 + HMPREF1058_RS15315 0.36 +0.8 953,565 - HMPREF1058_RS15315 0.37 -2.0 953,627 - HMPREF1058_RS15315 0.43 -1.1 953,744 + HMPREF1058_RS15315 0.55 -0.9 953,846 + HMPREF1058_RS15315 0.66 +0.6 954,112 - +2.9 954,112 - +2.4 954,118 + -1.2 954,119 - +2.4 954,119 - +4.6 954,155 + -2.1 954,155 + +1.2 954,156 - +1.7 954,156 - -1.2 954,156 - +1.0 954,184 + -0.4 954,204 + -0.1 954,222 + -0.2 954,276 + -0.9 954,277 - -0.2 954,280 + +1.4 954,288 + -0.1 954,290 + +0.6 954,325 - +1.3 954,387 + -1.4 954,388 - +0.4 954,528 + HMPREF1058_RS15310 0.13 -0.3 954,529 - HMPREF1058_RS15310 0.13 +1.5 954,533 - HMPREF1058_RS15310 0.14 +0.5 954,538 + HMPREF1058_RS15310 0.14 +0.3 954,631 - HMPREF1058_RS15310 0.20 +0.8 954,631 - HMPREF1058_RS15310 0.20 +0.9 954,634 + HMPREF1058_RS15310 0.20 -1.5 954,635 - HMPREF1058_RS15310 0.20 +1.1 954,635 - HMPREF1058_RS15310 0.20 +1.1 954,635 - HMPREF1058_RS15310 0.20 -1.7 954,636 + HMPREF1058_RS15310 0.20 +0.2 954,690 + HMPREF1058_RS15310 0.24 +0.5 954,694 + HMPREF1058_RS15310 0.24 -2.1 954,737 - HMPREF1058_RS15310 0.27 +0.0 954,739 - HMPREF1058_RS15310 0.27 +0.8 954,801 + HMPREF1058_RS15310 0.31 +0.0 954,801 + HMPREF1058_RS15310 0.31 -3.0 954,802 - HMPREF1058_RS15310 0.31 +1.7 954,802 - HMPREF1058_RS15310 0.31 +4.1 954,802 - HMPREF1058_RS15310 0.31 +1.6 954,834 + HMPREF1058_RS15310 0.33 -0.5 954,862 + HMPREF1058_RS15310 0.35 +0.2 954,954 + HMPREF1058_RS15310 0.41 +0.1 954,954 + HMPREF1058_RS15310 0.41 -0.9 954,954 + HMPREF1058_RS15310 0.41 +0.3 955,063 + HMPREF1058_RS15310 0.48 +0.7 955,064 - HMPREF1058_RS15310 0.48 -0.8 955,096 - HMPREF1058_RS15310 0.50 +1.2 955,121 - HMPREF1058_RS15310 0.52 +2.8 955,149 + HMPREF1058_RS15310 0.54 -0.9 955,150 - HMPREF1058_RS15310 0.54 +1.2 955,150 - HMPREF1058_RS15310 0.54 +2.0 955,150 - HMPREF1058_RS15310 0.54 +1.5 955,179 + HMPREF1058_RS15310 0.56 -0.5 955,440 + HMPREF1058_RS15310 0.73 -0.7 955,440 + HMPREF1058_RS15310 0.73 +0.5 955,441 - HMPREF1058_RS15310 0.73 +1.4 955,654 + HMPREF1058_RS15310 0.87 -0.7 955,732 + +0.3 955,795 + -1.5 955,818 - -0.3 955,873 - +0.2 955,899 - +0.9 955,914 + -0.3 955,914 + +0.2 956,016 + -0.5 956,020 - -2.2 956,063 - -0.8 956,105 + HMPREF1058_RS15305 0.10 +0.3 956,106 - HMPREF1058_RS15305 0.10 -1.7 956,110 + HMPREF1058_RS15305 0.11 -0.1 956,110 + HMPREF1058_RS15305 0.11 +0.5 956,127 - HMPREF1058_RS15305 0.12 -3.0 956,177 + HMPREF1058_RS15305 0.15 +0.7 956,177 + HMPREF1058_RS15305 0.15 -1.2 956,178 - HMPREF1058_RS15305 0.15 -1.9 956,178 - HMPREF1058_RS15305 0.15 -2.5 956,179 + HMPREF1058_RS15305 0.16 -0.5 956,210 + HMPREF1058_RS15305 0.18 +0.2 956,229 - HMPREF1058_RS15305 0.19 +0.1 956,262 + HMPREF1058_RS15305 0.21 -1.1 956,387 - HMPREF1058_RS15305 0.30 -1.7 956,430 + HMPREF1058_RS15305 0.33 +0.6 956,431 - HMPREF1058_RS15305 0.33 -2.4 956,458 - HMPREF1058_RS15305 0.35 -0.7 956,458 - HMPREF1058_RS15305 0.35 -4.2 956,460 - HMPREF1058_RS15305 0.35 -1.2 956,474 - HMPREF1058_RS15305 0.36 -1.6 956,560 - HMPREF1058_RS15305 0.42 -1.5 956,566 + HMPREF1058_RS15305 0.42 -0.4 956,571 - HMPREF1058_RS15305 0.43 -1.0 956,574 - HMPREF1058_RS15305 0.43 -0.1 956,584 - HMPREF1058_RS15305 0.43 -1.5 956,652 + HMPREF1058_RS15305 0.48 +0.2 956,652 + HMPREF1058_RS15305 0.48 +0.4 956,652 + HMPREF1058_RS15305 0.48 -1.3 956,652 + HMPREF1058_RS15305 0.48 +0.2 956,653 - HMPREF1058_RS15305 0.48 -1.8 956,653 - HMPREF1058_RS15305 0.48 -0.9 956,653 - HMPREF1058_RS15305 0.48 -1.9 956,656 + HMPREF1058_RS15305 0.48 +0.9 956,784 + HMPREF1058_RS15305 0.57 -0.4 956,785 - HMPREF1058_RS15305 0.57 +0.3 956,844 - HMPREF1058_RS15305 0.61 -0.3 956,848 - HMPREF1058_RS15305 0.62 -2.2 956,848 - HMPREF1058_RS15305 0.62 -0.8
Or see this region's nucleotide sequence