Experiment: Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10125 and HMPREF1058_RS10120 overlap by 4 nucleotides HMPREF1058_RS10120 and HMPREF1058_RS10115 are separated by 254 nucleotides HMPREF1058_RS10115 and HMPREF1058_RS10110 are separated by 1 nucleotides
HMPREF1058_RS10125: HMPREF1058_RS10125 - AAA family ATPase, at 718,717 to 720,711
_RS10125
HMPREF1058_RS10120: HMPREF1058_RS10120 - hypothetical protein, at 720,708 to 720,995
_RS10120
HMPREF1058_RS10115: HMPREF1058_RS10115 - helix-turn-helix transcriptional regulator, at 721,250 to 721,801
_RS10115
HMPREF1058_RS10110: HMPREF1058_RS10110 - hypothetical protein, at 721,803 to 722,048
_RS10110
Position (kb) 720
721 Strain fitness (log2 ratio) -1
0
1
2
3 at 719.806 kb on + strand, within HMPREF1058_RS10125 at 720.100 kb on + strand, within HMPREF1058_RS10125 at 720.219 kb on + strand, within HMPREF1058_RS10125 at 720.254 kb on + strand, within HMPREF1058_RS10125 at 720.317 kb on + strand, within HMPREF1058_RS10125 at 720.317 kb on + strand, within HMPREF1058_RS10125 at 720.420 kb on + strand, within HMPREF1058_RS10125 at 720.484 kb on + strand, within HMPREF1058_RS10125 at 720.484 kb on + strand, within HMPREF1058_RS10125 at 720.516 kb on + strand at 720.700 kb on + strand at 720.724 kb on + strand at 720.724 kb on + strand at 720.724 kb on + strand at 720.724 kb on + strand at 720.724 kb on + strand at 720.780 kb on + strand, within HMPREF1058_RS10120 at 720.812 kb on + strand, within HMPREF1058_RS10120 at 720.871 kb on + strand, within HMPREF1058_RS10120 at 720.871 kb on + strand, within HMPREF1058_RS10120 at 720.984 kb on + strand at 720.996 kb on + strand at 721.078 kb on + strand at 721.084 kb on + strand at 721.084 kb on + strand at 721.095 kb on + strand at 721.095 kb on + strand at 721.211 kb on + strand at 721.429 kb on + strand, within HMPREF1058_RS10115 at 721.557 kb on + strand, within HMPREF1058_RS10115 at 721.559 kb on + strand, within HMPREF1058_RS10115 at 721.656 kb on + strand, within HMPREF1058_RS10115 at 721.656 kb on + strand, within HMPREF1058_RS10115 at 721.723 kb on + strand, within HMPREF1058_RS10115 at 721.759 kb on + strand at 721.979 kb on + strand, within HMPREF1058_RS10110
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C) remove 719,806 + HMPREF1058_RS10125 0.55 -0.0 720,100 + HMPREF1058_RS10125 0.69 -0.3 720,219 + HMPREF1058_RS10125 0.75 -0.7 720,254 + HMPREF1058_RS10125 0.77 +0.2 720,317 + HMPREF1058_RS10125 0.80 -0.2 720,317 + HMPREF1058_RS10125 0.80 +0.0 720,420 + HMPREF1058_RS10125 0.85 +0.9 720,484 + HMPREF1058_RS10125 0.89 -0.0 720,484 + HMPREF1058_RS10125 0.89 +0.2 720,516 + +0.7 720,700 + -0.2 720,724 + -1.0 720,724 + +0.3 720,724 + -0.3 720,724 + +0.4 720,724 + +0.0 720,780 + HMPREF1058_RS10120 0.25 -0.3 720,812 + HMPREF1058_RS10120 0.36 +0.2 720,871 + HMPREF1058_RS10120 0.57 +3.2 720,871 + HMPREF1058_RS10120 0.57 -0.1 720,984 + -0.2 720,996 + +2.1 721,078 + +1.0 721,084 + +2.5 721,084 + -0.2 721,095 + -0.8 721,095 + -0.4 721,211 + -0.1 721,429 + HMPREF1058_RS10115 0.32 -0.5 721,557 + HMPREF1058_RS10115 0.56 -0.1 721,559 + HMPREF1058_RS10115 0.56 +0.8 721,656 + HMPREF1058_RS10115 0.74 -0.4 721,656 + HMPREF1058_RS10115 0.74 +0.1 721,723 + HMPREF1058_RS10115 0.86 +1.1 721,759 + -0.4 721,979 + HMPREF1058_RS10110 0.72 -1.3
Or see this region's nucleotide sequence