Experiment: Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07010 and HMPREF1058_RS07005 are separated by 200 nucleotides HMPREF1058_RS07005 and HMPREF1058_RS07000 are separated by 89 nucleotides
HMPREF1058_RS07010: HMPREF1058_RS07010 - endolytic transglycosylase MltG, at 335,557 to 336,591
_RS07010
HMPREF1058_RS07005: HMPREF1058_RS07005 - alpha-N-arabinofuranosidase, at 336,792 to 338,315
_RS07005
HMPREF1058_RS07000: HMPREF1058_RS07000 - DNA/RNA non-specific endonuclease, at 338,405 to 339,262
_RS07000
Position (kb) 336
337
338
339 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 335.875 kb on - strand, within HMPREF1058_RS07010 at 335.977 kb on - strand, within HMPREF1058_RS07010 at 336.069 kb on + strand, within HMPREF1058_RS07010 at 336.093 kb on + strand, within HMPREF1058_RS07010 at 336.126 kb on + strand, within HMPREF1058_RS07010 at 336.126 kb on + strand at 336.235 kb on + strand, within HMPREF1058_RS07010 at 336.340 kb on + strand, within HMPREF1058_RS07010 at 336.341 kb on - strand, within HMPREF1058_RS07010 at 336.390 kb on + strand, within HMPREF1058_RS07010 at 336.397 kb on - strand, within HMPREF1058_RS07010 at 336.428 kb on - strand, within HMPREF1058_RS07010 at 336.454 kb on + strand, within HMPREF1058_RS07010 at 336.456 kb on + strand, within HMPREF1058_RS07010 at 336.458 kb on + strand, within HMPREF1058_RS07010 at 336.459 kb on - strand, within HMPREF1058_RS07010 at 336.459 kb on - strand, within HMPREF1058_RS07010 at 336.462 kb on + strand, within HMPREF1058_RS07010 at 336.464 kb on + strand, within HMPREF1058_RS07010 at 336.504 kb on - strand at 336.509 kb on + strand at 336.509 kb on + strand at 336.510 kb on - strand at 336.510 kb on - strand at 336.510 kb on - strand at 336.511 kb on + strand at 336.512 kb on - strand at 336.514 kb on - strand at 336.514 kb on - strand at 336.550 kb on - strand at 336.559 kb on - strand at 336.559 kb on - strand at 336.565 kb on + strand at 336.615 kb on - strand at 336.623 kb on - strand at 336.625 kb on - strand at 336.625 kb on - strand at 336.704 kb on + strand at 336.704 kb on + strand at 336.705 kb on - strand at 336.746 kb on + strand at 336.748 kb on + strand at 336.792 kb on - strand at 336.853 kb on + strand at 336.854 kb on - strand at 336.926 kb on + strand at 336.926 kb on + strand at 336.927 kb on - strand at 337.063 kb on - strand, within HMPREF1058_RS07005 at 337.146 kb on - strand, within HMPREF1058_RS07005 at 337.186 kb on + strand, within HMPREF1058_RS07005 at 337.201 kb on - strand, within HMPREF1058_RS07005 at 337.201 kb on - strand, within HMPREF1058_RS07005 at 337.216 kb on + strand, within HMPREF1058_RS07005 at 337.258 kb on - strand, within HMPREF1058_RS07005 at 337.345 kb on + strand, within HMPREF1058_RS07005 at 337.349 kb on + strand, within HMPREF1058_RS07005 at 337.393 kb on - strand, within HMPREF1058_RS07005 at 337.434 kb on + strand, within HMPREF1058_RS07005 at 337.434 kb on + strand, within HMPREF1058_RS07005 at 337.434 kb on + strand, within HMPREF1058_RS07005 at 337.435 kb on - strand, within HMPREF1058_RS07005 at 337.435 kb on - strand, within HMPREF1058_RS07005 at 337.479 kb on + strand, within HMPREF1058_RS07005 at 337.551 kb on + strand, within HMPREF1058_RS07005 at 337.664 kb on + strand, within HMPREF1058_RS07005 at 337.834 kb on - strand, within HMPREF1058_RS07005 at 337.834 kb on - strand, within HMPREF1058_RS07005 at 337.933 kb on - strand, within HMPREF1058_RS07005 at 337.951 kb on - strand, within HMPREF1058_RS07005 at 337.952 kb on + strand, within HMPREF1058_RS07005 at 337.953 kb on - strand, within HMPREF1058_RS07005 at 337.971 kb on - strand, within HMPREF1058_RS07005 at 337.975 kb on - strand, within HMPREF1058_RS07005 at 338.011 kb on + strand, within HMPREF1058_RS07005 at 338.024 kb on + strand, within HMPREF1058_RS07005 at 338.024 kb on + strand, within HMPREF1058_RS07005 at 338.039 kb on - strand, within HMPREF1058_RS07005 at 338.119 kb on + strand, within HMPREF1058_RS07005 at 338.186 kb on - strand at 338.193 kb on + strand at 338.194 kb on - strand at 338.199 kb on - strand at 338.313 kb on + strand at 338.322 kb on + strand at 338.344 kb on + strand at 338.344 kb on + strand at 338.345 kb on - strand at 338.345 kb on - strand at 338.345 kb on - strand at 338.348 kb on + strand at 338.349 kb on - strand at 338.349 kb on - strand at 338.349 kb on - strand at 338.362 kb on + strand at 338.362 kb on + strand at 338.362 kb on + strand at 338.362 kb on + strand at 338.363 kb on - strand at 338.363 kb on - strand at 338.363 kb on - strand at 338.366 kb on + strand at 338.366 kb on + strand at 338.367 kb on - strand at 338.370 kb on + strand at 338.370 kb on + strand at 338.370 kb on + strand at 338.370 kb on + strand at 338.370 kb on + strand at 338.371 kb on - strand at 338.371 kb on - strand at 338.371 kb on - strand at 338.371 kb on - strand at 338.371 kb on - strand at 338.374 kb on + strand at 338.516 kb on - strand, within HMPREF1058_RS07000 at 338.533 kb on + strand, within HMPREF1058_RS07000 at 338.558 kb on - strand, within HMPREF1058_RS07000 at 338.659 kb on + strand, within HMPREF1058_RS07000 at 338.667 kb on + strand, within HMPREF1058_RS07000 at 338.667 kb on + strand, within HMPREF1058_RS07000 at 338.668 kb on - strand, within HMPREF1058_RS07000 at 338.668 kb on - strand, within HMPREF1058_RS07000 at 338.668 kb on - strand, within HMPREF1058_RS07000 at 338.669 kb on + strand, within HMPREF1058_RS07000 at 338.669 kb on + strand, within HMPREF1058_RS07000 at 338.669 kb on + strand, within HMPREF1058_RS07000 at 338.670 kb on - strand, within HMPREF1058_RS07000 at 338.670 kb on - strand, within HMPREF1058_RS07000 at 338.670 kb on - strand, within HMPREF1058_RS07000 at 338.688 kb on + strand, within HMPREF1058_RS07000 at 338.689 kb on - strand, within HMPREF1058_RS07000 at 338.789 kb on - strand, within HMPREF1058_RS07000 at 338.790 kb on + strand, within HMPREF1058_RS07000 at 338.791 kb on - strand, within HMPREF1058_RS07000 at 338.873 kb on - strand, within HMPREF1058_RS07000 at 338.885 kb on - strand, within HMPREF1058_RS07000 at 338.887 kb on - strand, within HMPREF1058_RS07000 at 338.887 kb on - strand, within HMPREF1058_RS07000 at 338.904 kb on - strand, within HMPREF1058_RS07000 at 338.904 kb on - strand, within HMPREF1058_RS07000 at 339.008 kb on - strand, within HMPREF1058_RS07000 at 339.009 kb on + strand, within HMPREF1058_RS07000 at 339.019 kb on + strand, within HMPREF1058_RS07000 at 339.020 kb on - strand, within HMPREF1058_RS07000 at 339.053 kb on - strand at 339.063 kb on - strand, within HMPREF1058_RS07000 at 339.181 kb on + strand at 339.182 kb on - strand at 339.184 kb on - strand at 339.203 kb on + strand at 339.204 kb on - strand at 339.295 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C) remove 335,875 - HMPREF1058_RS07010 0.31 -0.0 335,977 - HMPREF1058_RS07010 0.41 -0.1 336,069 + HMPREF1058_RS07010 0.49 +0.7 336,093 + HMPREF1058_RS07010 0.52 +1.8 336,126 + HMPREF1058_RS07010 0.55 -0.5 336,126 + +0.6 336,235 + HMPREF1058_RS07010 0.66 -0.7 336,340 + HMPREF1058_RS07010 0.76 -1.2 336,341 - HMPREF1058_RS07010 0.76 -0.7 336,390 + HMPREF1058_RS07010 0.80 -0.0 336,397 - HMPREF1058_RS07010 0.81 -0.2 336,428 - HMPREF1058_RS07010 0.84 -1.6 336,454 + HMPREF1058_RS07010 0.87 -0.1 336,456 + HMPREF1058_RS07010 0.87 +1.6 336,458 + HMPREF1058_RS07010 0.87 -0.1 336,459 - HMPREF1058_RS07010 0.87 +0.3 336,459 - HMPREF1058_RS07010 0.87 -0.9 336,462 + HMPREF1058_RS07010 0.87 -2.6 336,464 + HMPREF1058_RS07010 0.88 +0.0 336,504 - +2.9 336,509 + +1.0 336,509 + -0.5 336,510 - -0.2 336,510 - +0.9 336,510 - -0.2 336,511 + +0.6 336,512 - +0.3 336,514 - -0.4 336,514 - +1.3 336,550 - -0.1 336,559 - -0.1 336,559 - +1.6 336,565 + -0.4 336,615 - -0.3 336,623 - -0.0 336,625 - +0.2 336,625 - -0.5 336,704 + -0.0 336,704 + +1.6 336,705 - -1.5 336,746 + +1.6 336,748 + -0.4 336,792 - +0.9 336,853 + -0.2 336,854 - -0.2 336,926 + -0.6 336,926 + -0.1 336,927 - -0.5 337,063 - HMPREF1058_RS07005 0.18 -1.0 337,146 - HMPREF1058_RS07005 0.23 +1.6 337,186 + HMPREF1058_RS07005 0.26 -1.7 337,201 - HMPREF1058_RS07005 0.27 -1.0 337,201 - HMPREF1058_RS07005 0.27 +0.2 337,216 + HMPREF1058_RS07005 0.28 +0.9 337,258 - HMPREF1058_RS07005 0.31 +0.8 337,345 + HMPREF1058_RS07005 0.36 +0.6 337,349 + HMPREF1058_RS07005 0.37 -0.8 337,393 - HMPREF1058_RS07005 0.39 -0.0 337,434 + HMPREF1058_RS07005 0.42 +0.5 337,434 + HMPREF1058_RS07005 0.42 -0.1 337,434 + HMPREF1058_RS07005 0.42 -0.8 337,435 - HMPREF1058_RS07005 0.42 +0.6 337,435 - HMPREF1058_RS07005 0.42 -0.7 337,479 + HMPREF1058_RS07005 0.45 -0.6 337,551 + HMPREF1058_RS07005 0.50 +0.7 337,664 + HMPREF1058_RS07005 0.57 -0.3 337,834 - HMPREF1058_RS07005 0.68 +0.2 337,834 - HMPREF1058_RS07005 0.68 +1.6 337,933 - HMPREF1058_RS07005 0.75 +0.1 337,951 - HMPREF1058_RS07005 0.76 +0.5 337,952 + HMPREF1058_RS07005 0.76 +0.3 337,953 - HMPREF1058_RS07005 0.76 +1.2 337,971 - HMPREF1058_RS07005 0.77 -0.1 337,975 - HMPREF1058_RS07005 0.78 -0.4 338,011 + HMPREF1058_RS07005 0.80 +0.3 338,024 + HMPREF1058_RS07005 0.81 -0.8 338,024 + HMPREF1058_RS07005 0.81 -1.0 338,039 - HMPREF1058_RS07005 0.82 -0.9 338,119 + HMPREF1058_RS07005 0.87 -0.1 338,186 - +0.7 338,193 + -0.5 338,194 - +0.0 338,199 - -0.3 338,313 + -0.3 338,322 + +0.1 338,344 + +0.7 338,344 + +0.2 338,345 - +1.2 338,345 - +1.1 338,345 - +2.1 338,348 + -0.9 338,349 - +0.7 338,349 - -0.4 338,349 - -0.8 338,362 + +0.4 338,362 + -0.4 338,362 + +0.3 338,362 + +0.1 338,363 - +0.1 338,363 - -0.7 338,363 - +0.4 338,366 + -0.0 338,366 + +0.5 338,367 - -0.7 338,370 + -0.3 338,370 + -0.3 338,370 + -0.3 338,370 + +1.3 338,370 + +1.6 338,371 - +0.3 338,371 - -0.7 338,371 - -0.1 338,371 - -0.1 338,371 - +0.5 338,374 + +1.8 338,516 - HMPREF1058_RS07000 0.13 -0.1 338,533 + HMPREF1058_RS07000 0.15 +0.7 338,558 - HMPREF1058_RS07000 0.18 +0.5 338,659 + HMPREF1058_RS07000 0.30 +0.8 338,667 + HMPREF1058_RS07000 0.31 +0.2 338,667 + HMPREF1058_RS07000 0.31 -0.1 338,668 - HMPREF1058_RS07000 0.31 +0.4 338,668 - HMPREF1058_RS07000 0.31 +1.3 338,668 - HMPREF1058_RS07000 0.31 -0.4 338,669 + HMPREF1058_RS07000 0.31 +1.1 338,669 + HMPREF1058_RS07000 0.31 -0.4 338,669 + HMPREF1058_RS07000 0.31 +0.9 338,670 - HMPREF1058_RS07000 0.31 +1.6 338,670 - HMPREF1058_RS07000 0.31 +1.2 338,670 - HMPREF1058_RS07000 0.31 -0.3 338,688 + HMPREF1058_RS07000 0.33 +0.8 338,689 - HMPREF1058_RS07000 0.33 -2.9 338,789 - HMPREF1058_RS07000 0.45 -1.3 338,790 + HMPREF1058_RS07000 0.45 +0.4 338,791 - HMPREF1058_RS07000 0.45 +1.9 338,873 - HMPREF1058_RS07000 0.55 -0.6 338,885 - HMPREF1058_RS07000 0.56 +0.7 338,887 - HMPREF1058_RS07000 0.56 +0.4 338,887 - HMPREF1058_RS07000 0.56 +1.4 338,904 - HMPREF1058_RS07000 0.58 +4.0 338,904 - HMPREF1058_RS07000 0.58 -0.2 339,008 - HMPREF1058_RS07000 0.70 +0.7 339,009 + HMPREF1058_RS07000 0.70 +2.0 339,019 + HMPREF1058_RS07000 0.72 -0.9 339,020 - HMPREF1058_RS07000 0.72 +0.6 339,053 - +2.6 339,063 - HMPREF1058_RS07000 0.77 +1.5 339,181 + -0.7 339,182 - +2.2 339,184 - +0.8 339,203 + -1.2 339,204 - -0.6 339,295 + +0.7
Or see this region's nucleotide sequence