Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04145

Experiment: Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C)
108,397	+				-0.5
108,404	+				+2.0
108,453	-				-0.5
108,495	+				+0.4
108,527	-				-0.8
108,537	-				-0.0
108,538	+				-0.2
108,616	+		HMPREF1058_RS04150	0.12	+1.7
108,617	-		HMPREF1058_RS04150	0.12	+0.5
108,634	+		HMPREF1058_RS04150	0.14	+1.7
108,634	+		HMPREF1058_RS04150	0.14	+0.3
108,635	-		HMPREF1058_RS04150	0.14	+0.5
108,635	-		HMPREF1058_RS04150	0.14	+2.2
108,658	+		HMPREF1058_RS04150	0.17	-0.1
108,690	+		HMPREF1058_RS04150	0.21	-0.2
108,782	-		HMPREF1058_RS04150	0.32	+0.4
108,882	-		HMPREF1058_RS04150	0.44	-0.7
109,088	-		HMPREF1058_RS04150	0.69	+0.6
109,088	-		HMPREF1058_RS04150	0.69	+1.2
109,138	+		HMPREF1058_RS04150	0.75	+1.3
109,384	+				+0.2
109,431	-		HMPREF1058_RS04145	0.10	-0.3
109,531	+		HMPREF1058_RS04145	0.22	+0.4
109,531	+		HMPREF1058_RS04145	0.22	-0.1
109,532	-		HMPREF1058_RS04145	0.22	+0.1
109,535	+		HMPREF1058_RS04145	0.23	-0.8
109,536	-		HMPREF1058_RS04145	0.23	-0.0
109,606	+		HMPREF1058_RS04145	0.31	-1.0
109,686	-		HMPREF1058_RS04145	0.41	+0.3
109,713	+		HMPREF1058_RS04145	0.44	-0.5
109,790	-		HMPREF1058_RS04145	0.53	-1.7
109,861	-		HMPREF1058_RS04145	0.61	-0.5
109,964	-		HMPREF1058_RS04145	0.74	+0.1
110,094	+		HMPREF1058_RS04145	0.89	-2.0
110,095	-		HMPREF1058_RS04145	0.89	-0.0
110,190	-				+1.3
110,221	+				-1.4
110,222	-				-0.5
110,258	+				+0.9
110,259	-				-0.2
110,322	+				-0.7
110,322	+				-1.1
110,323	-				+1.0
110,325	-				-0.1
110,330	-				-0.4
110,383	-				-0.7
110,383	-				+0.6
110,387	-				+0.5
110,436	+		HMPREF1058_RS04140	0.12	+0.2
110,495	-		HMPREF1058_RS04140	0.18	-0.2
110,495	-		HMPREF1058_RS04140	0.18	-0.1
110,559	+		HMPREF1058_RS04140	0.25	+0.1
110,576	+		HMPREF1058_RS04140	0.27	+1.0
110,798	-		HMPREF1058_RS04140	0.51	-0.2
110,842	+		HMPREF1058_RS04140	0.56	+0.9
110,977	+		HMPREF1058_RS04140	0.71	-0.1
110,978	-		HMPREF1058_RS04140	0.71	-0.7
110,978	-		HMPREF1058_RS04140	0.71	+1.3
111,070	-		HMPREF1058_RS04140	0.81	-0.4
111,086	-		HMPREF1058_RS04140	0.83	-1.1
111,089	+		HMPREF1058_RS04140	0.83	-0.1
111,106	-		HMPREF1058_RS04140	0.85	-0.5
111,144	+		HMPREF1058_RS04140	0.90	-0.7
111,144	+		HMPREF1058_RS04140	0.90	-0.2
111,175	+				-0.6