Experiment: Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15950 and HMPREF1058_RS15945 are separated by 242 nucleotides HMPREF1058_RS15945 and HMPREF1058_RS15940 are separated by 104 nucleotides
HMPREF1058_RS15950: HMPREF1058_RS15950 - TonB-dependent receptor, at 798,380 to 801,418
_RS15950
HMPREF1058_RS15945: HMPREF1058_RS15945 - helix-turn-helix domain-containing protein, at 801,661 to 804,480
_RS15945
HMPREF1058_RS15940: HMPREF1058_RS15940 - carboxylating nicotinate-nucleotide diphosphorylase, at 804,585 to 805,436
_RS15940
Position (kb) 801
802
803
804
805 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 800.689 kb on - strand, within HMPREF1058_RS15950 at 800.693 kb on - strand at 800.693 kb on - strand, within HMPREF1058_RS15950 at 800.726 kb on - strand, within HMPREF1058_RS15950 at 800.803 kb on + strand, within HMPREF1058_RS15950 at 800.912 kb on + strand, within HMPREF1058_RS15950 at 800.912 kb on + strand, within HMPREF1058_RS15950 at 800.983 kb on + strand, within HMPREF1058_RS15950 at 800.993 kb on - strand, within HMPREF1058_RS15950 at 801.079 kb on + strand, within HMPREF1058_RS15950 at 801.079 kb on + strand, within HMPREF1058_RS15950 at 801.092 kb on - strand, within HMPREF1058_RS15950 at 801.092 kb on - strand, within HMPREF1058_RS15950 at 801.094 kb on - strand, within HMPREF1058_RS15950 at 801.102 kb on + strand, within HMPREF1058_RS15950 at 801.102 kb on + strand, within HMPREF1058_RS15950 at 801.102 kb on + strand, within HMPREF1058_RS15950 at 801.103 kb on - strand, within HMPREF1058_RS15950 at 801.251 kb on - strand at 801.269 kb on + strand at 801.270 kb on - strand at 801.276 kb on - strand at 801.329 kb on + strand at 801.330 kb on - strand at 801.331 kb on + strand at 801.332 kb on - strand at 801.370 kb on - strand at 801.392 kb on - strand at 801.476 kb on + strand at 801.477 kb on - strand at 801.510 kb on - strand at 801.587 kb on + strand at 801.679 kb on - strand at 801.680 kb on + strand at 801.680 kb on + strand at 801.683 kb on + strand at 801.686 kb on - strand at 801.686 kb on - strand at 801.687 kb on + strand at 801.690 kb on + strand at 801.691 kb on - strand at 801.691 kb on - strand at 801.734 kb on - strand at 801.784 kb on - strand at 801.844 kb on + strand at 801.907 kb on - strand at 801.907 kb on - strand at 801.929 kb on + strand at 801.930 kb on - strand at 801.942 kb on - strand at 801.980 kb on + strand, within HMPREF1058_RS15945 at 801.983 kb on - strand, within HMPREF1058_RS15945 at 802.026 kb on + strand, within HMPREF1058_RS15945 at 802.027 kb on - strand, within HMPREF1058_RS15945 at 802.056 kb on + strand, within HMPREF1058_RS15945 at 802.056 kb on + strand, within HMPREF1058_RS15945 at 802.057 kb on - strand, within HMPREF1058_RS15945 at 802.057 kb on - strand, within HMPREF1058_RS15945 at 802.058 kb on + strand, within HMPREF1058_RS15945 at 802.092 kb on + strand, within HMPREF1058_RS15945 at 802.093 kb on - strand, within HMPREF1058_RS15945 at 802.123 kb on + strand, within HMPREF1058_RS15945 at 802.124 kb on - strand, within HMPREF1058_RS15945 at 802.225 kb on - strand, within HMPREF1058_RS15945 at 802.225 kb on - strand, within HMPREF1058_RS15945 at 802.228 kb on + strand, within HMPREF1058_RS15945 at 802.229 kb on - strand, within HMPREF1058_RS15945 at 802.229 kb on - strand, within HMPREF1058_RS15945 at 802.286 kb on + strand, within HMPREF1058_RS15945 at 802.300 kb on + strand, within HMPREF1058_RS15945 at 802.318 kb on + strand, within HMPREF1058_RS15945 at 802.319 kb on - strand, within HMPREF1058_RS15945 at 802.319 kb on - strand, within HMPREF1058_RS15945 at 802.319 kb on - strand, within HMPREF1058_RS15945 at 802.322 kb on + strand, within HMPREF1058_RS15945 at 802.322 kb on + strand, within HMPREF1058_RS15945 at 802.322 kb on + strand, within HMPREF1058_RS15945 at 802.357 kb on + strand, within HMPREF1058_RS15945 at 802.358 kb on - strand, within HMPREF1058_RS15945 at 802.358 kb on - strand, within HMPREF1058_RS15945 at 802.358 kb on - strand, within HMPREF1058_RS15945 at 802.420 kb on + strand, within HMPREF1058_RS15945 at 802.421 kb on - strand, within HMPREF1058_RS15945 at 802.444 kb on - strand, within HMPREF1058_RS15945 at 802.563 kb on + strand, within HMPREF1058_RS15945 at 802.576 kb on + strand, within HMPREF1058_RS15945 at 802.577 kb on - strand, within HMPREF1058_RS15945 at 802.608 kb on + strand, within HMPREF1058_RS15945 at 802.609 kb on - strand, within HMPREF1058_RS15945 at 802.635 kb on + strand, within HMPREF1058_RS15945 at 802.657 kb on + strand, within HMPREF1058_RS15945 at 802.658 kb on - strand, within HMPREF1058_RS15945 at 802.659 kb on + strand, within HMPREF1058_RS15945 at 802.660 kb on - strand, within HMPREF1058_RS15945 at 802.699 kb on - strand, within HMPREF1058_RS15945 at 802.717 kb on + strand, within HMPREF1058_RS15945 at 802.775 kb on - strand, within HMPREF1058_RS15945 at 802.836 kb on + strand, within HMPREF1058_RS15945 at 802.889 kb on + strand, within HMPREF1058_RS15945 at 802.894 kb on - strand, within HMPREF1058_RS15945 at 802.894 kb on - strand, within HMPREF1058_RS15945 at 802.894 kb on - strand, within HMPREF1058_RS15945 at 802.919 kb on - strand at 802.969 kb on + strand, within HMPREF1058_RS15945 at 802.975 kb on + strand, within HMPREF1058_RS15945 at 803.052 kb on - strand, within HMPREF1058_RS15945 at 803.117 kb on - strand, within HMPREF1058_RS15945 at 803.164 kb on + strand, within HMPREF1058_RS15945 at 803.188 kb on - strand, within HMPREF1058_RS15945 at 803.226 kb on + strand at 803.265 kb on + strand, within HMPREF1058_RS15945 at 803.287 kb on + strand at 803.288 kb on - strand, within HMPREF1058_RS15945 at 803.292 kb on + strand, within HMPREF1058_RS15945 at 803.317 kb on - strand, within HMPREF1058_RS15945 at 803.318 kb on + strand, within HMPREF1058_RS15945 at 803.319 kb on - strand, within HMPREF1058_RS15945 at 803.319 kb on - strand, within HMPREF1058_RS15945 at 803.319 kb on - strand, within HMPREF1058_RS15945 at 803.322 kb on + strand, within HMPREF1058_RS15945 at 803.329 kb on + strand, within HMPREF1058_RS15945 at 803.408 kb on - strand, within HMPREF1058_RS15945 at 803.471 kb on + strand, within HMPREF1058_RS15945 at 803.472 kb on - strand, within HMPREF1058_RS15945 at 803.488 kb on - strand, within HMPREF1058_RS15945 at 803.488 kb on - strand, within HMPREF1058_RS15945 at 803.586 kb on - strand, within HMPREF1058_RS15945 at 803.652 kb on + strand, within HMPREF1058_RS15945 at 803.653 kb on - strand, within HMPREF1058_RS15945 at 803.685 kb on + strand, within HMPREF1058_RS15945 at 803.685 kb on + strand, within HMPREF1058_RS15945 at 803.685 kb on + strand, within HMPREF1058_RS15945 at 803.686 kb on - strand, within HMPREF1058_RS15945 at 803.686 kb on - strand, within HMPREF1058_RS15945 at 803.687 kb on + strand, within HMPREF1058_RS15945 at 803.688 kb on - strand, within HMPREF1058_RS15945 at 803.706 kb on + strand, within HMPREF1058_RS15945 at 803.734 kb on - strand, within HMPREF1058_RS15945 at 803.739 kb on - strand, within HMPREF1058_RS15945 at 803.808 kb on + strand, within HMPREF1058_RS15945 at 803.809 kb on - strand, within HMPREF1058_RS15945 at 803.851 kb on + strand, within HMPREF1058_RS15945 at 803.857 kb on - strand, within HMPREF1058_RS15945 at 803.857 kb on - strand, within HMPREF1058_RS15945 at 803.870 kb on + strand, within HMPREF1058_RS15945 at 803.908 kb on - strand, within HMPREF1058_RS15945 at 803.925 kb on - strand, within HMPREF1058_RS15945 at 803.928 kb on + strand, within HMPREF1058_RS15945 at 803.929 kb on - strand, within HMPREF1058_RS15945 at 804.035 kb on - strand, within HMPREF1058_RS15945 at 804.036 kb on + strand, within HMPREF1058_RS15945 at 804.037 kb on - strand, within HMPREF1058_RS15945 at 804.063 kb on + strand, within HMPREF1058_RS15945 at 804.090 kb on - strand, within HMPREF1058_RS15945 at 804.226 kb on - strand at 804.226 kb on - strand at 804.251 kb on + strand at 804.252 kb on - strand at 804.252 kb on - strand at 804.254 kb on - strand at 804.254 kb on - strand at 804.254 kb on - strand at 804.255 kb on + strand at 804.255 kb on + strand at 804.264 kb on - strand at 804.297 kb on + strand at 804.309 kb on - strand at 804.314 kb on + strand at 804.314 kb on + strand at 804.314 kb on + strand at 804.315 kb on - strand at 804.336 kb on - strand at 804.343 kb on - strand at 804.378 kb on - strand at 804.477 kb on - strand at 804.479 kb on - strand at 804.479 kb on - strand at 804.495 kb on + strand at 804.505 kb on + strand at 804.583 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C) remove 800,689 - HMPREF1058_RS15950 0.76 -0.3 800,693 - +0.6 800,693 - HMPREF1058_RS15950 0.76 +2.6 800,726 - HMPREF1058_RS15950 0.77 -0.7 800,803 + HMPREF1058_RS15950 0.80 -0.3 800,912 + HMPREF1058_RS15950 0.83 -0.3 800,912 + HMPREF1058_RS15950 0.83 +0.6 800,983 + HMPREF1058_RS15950 0.86 +2.0 800,993 - HMPREF1058_RS15950 0.86 -1.2 801,079 + HMPREF1058_RS15950 0.89 +1.6 801,079 + HMPREF1058_RS15950 0.89 -1.5 801,092 - HMPREF1058_RS15950 0.89 +0.0 801,092 - HMPREF1058_RS15950 0.89 -0.3 801,094 - HMPREF1058_RS15950 0.89 -1.0 801,102 + HMPREF1058_RS15950 0.90 -0.5 801,102 + HMPREF1058_RS15950 0.90 +0.8 801,102 + HMPREF1058_RS15950 0.90 -1.0 801,103 - HMPREF1058_RS15950 0.90 +0.6 801,251 - -0.8 801,269 + -1.5 801,270 - -0.4 801,276 - -0.5 801,329 + -0.8 801,330 - -0.5 801,331 + -0.4 801,332 - +3.7 801,370 - +2.2 801,392 - -1.4 801,476 + -1.0 801,477 - -0.6 801,510 - +0.4 801,587 + -0.2 801,679 - -1.4 801,680 + +1.3 801,680 + -0.4 801,683 + +0.9 801,686 - +0.3 801,686 - -0.7 801,687 + -0.4 801,690 + +0.1 801,691 - -0.6 801,691 - -0.4 801,734 - +0.6 801,784 - -1.4 801,844 + +0.7 801,907 - +1.2 801,907 - -0.2 801,929 + -0.1 801,930 - -0.6 801,942 - +1.6 801,980 + HMPREF1058_RS15945 0.11 -1.7 801,983 - HMPREF1058_RS15945 0.11 -0.2 802,026 + HMPREF1058_RS15945 0.13 -0.2 802,027 - HMPREF1058_RS15945 0.13 -0.6 802,056 + HMPREF1058_RS15945 0.14 +0.3 802,056 + HMPREF1058_RS15945 0.14 -0.7 802,057 - HMPREF1058_RS15945 0.14 -0.8 802,057 - HMPREF1058_RS15945 0.14 -1.0 802,058 + HMPREF1058_RS15945 0.14 -0.8 802,092 + HMPREF1058_RS15945 0.15 -0.4 802,093 - HMPREF1058_RS15945 0.15 +0.6 802,123 + HMPREF1058_RS15945 0.16 -0.4 802,124 - HMPREF1058_RS15945 0.16 +1.4 802,225 - HMPREF1058_RS15945 0.20 -0.4 802,225 - HMPREF1058_RS15945 0.20 +4.1 802,228 + HMPREF1058_RS15945 0.20 -2.9 802,229 - HMPREF1058_RS15945 0.20 +1.2 802,229 - HMPREF1058_RS15945 0.20 +1.3 802,286 + HMPREF1058_RS15945 0.22 -0.5 802,300 + HMPREF1058_RS15945 0.23 +0.1 802,318 + HMPREF1058_RS15945 0.23 +0.8 802,319 - HMPREF1058_RS15945 0.23 -0.6 802,319 - HMPREF1058_RS15945 0.23 +3.5 802,319 - HMPREF1058_RS15945 0.23 +1.6 802,322 + HMPREF1058_RS15945 0.23 +0.6 802,322 + HMPREF1058_RS15945 0.23 -0.0 802,322 + HMPREF1058_RS15945 0.23 +1.0 802,357 + HMPREF1058_RS15945 0.25 +0.5 802,358 - HMPREF1058_RS15945 0.25 -0.5 802,358 - HMPREF1058_RS15945 0.25 -0.1 802,358 - HMPREF1058_RS15945 0.25 +2.0 802,420 + HMPREF1058_RS15945 0.27 +0.8 802,421 - HMPREF1058_RS15945 0.27 -0.4 802,444 - HMPREF1058_RS15945 0.28 +1.0 802,563 + HMPREF1058_RS15945 0.32 +0.1 802,576 + HMPREF1058_RS15945 0.32 -0.2 802,577 - HMPREF1058_RS15945 0.32 -1.0 802,608 + HMPREF1058_RS15945 0.34 +0.5 802,609 - HMPREF1058_RS15945 0.34 -2.6 802,635 + HMPREF1058_RS15945 0.35 -0.2 802,657 + HMPREF1058_RS15945 0.35 +0.3 802,658 - HMPREF1058_RS15945 0.35 +1.0 802,659 + HMPREF1058_RS15945 0.35 +0.9 802,660 - HMPREF1058_RS15945 0.35 -0.1 802,699 - HMPREF1058_RS15945 0.37 +1.1 802,717 + HMPREF1058_RS15945 0.37 +0.6 802,775 - HMPREF1058_RS15945 0.40 -2.1 802,836 + HMPREF1058_RS15945 0.42 +0.1 802,889 + HMPREF1058_RS15945 0.44 +0.8 802,894 - HMPREF1058_RS15945 0.44 -0.2 802,894 - HMPREF1058_RS15945 0.44 +0.0 802,894 - HMPREF1058_RS15945 0.44 -0.3 802,919 - -0.7 802,969 + HMPREF1058_RS15945 0.46 +0.2 802,975 + HMPREF1058_RS15945 0.47 -0.1 803,052 - HMPREF1058_RS15945 0.49 +0.2 803,117 - HMPREF1058_RS15945 0.52 +0.2 803,164 + HMPREF1058_RS15945 0.53 -0.3 803,188 - HMPREF1058_RS15945 0.54 -0.5 803,226 + +2.1 803,265 + HMPREF1058_RS15945 0.57 -0.9 803,287 + +1.6 803,288 - HMPREF1058_RS15945 0.58 +0.3 803,292 + HMPREF1058_RS15945 0.58 +0.4 803,317 - HMPREF1058_RS15945 0.59 -1.6 803,318 + HMPREF1058_RS15945 0.59 -0.4 803,319 - HMPREF1058_RS15945 0.59 -1.5 803,319 - HMPREF1058_RS15945 0.59 -1.4 803,319 - HMPREF1058_RS15945 0.59 -0.2 803,322 + HMPREF1058_RS15945 0.59 +0.3 803,329 + HMPREF1058_RS15945 0.59 -1.8 803,408 - HMPREF1058_RS15945 0.62 +0.9 803,471 + HMPREF1058_RS15945 0.64 -0.2 803,472 - HMPREF1058_RS15945 0.64 -0.1 803,488 - HMPREF1058_RS15945 0.65 +0.2 803,488 - HMPREF1058_RS15945 0.65 +3.6 803,586 - HMPREF1058_RS15945 0.68 +0.1 803,652 + HMPREF1058_RS15945 0.71 -0.9 803,653 - HMPREF1058_RS15945 0.71 +0.1 803,685 + HMPREF1058_RS15945 0.72 -0.8 803,685 + HMPREF1058_RS15945 0.72 -0.4 803,685 + HMPREF1058_RS15945 0.72 +1.2 803,686 - HMPREF1058_RS15945 0.72 +0.8 803,686 - HMPREF1058_RS15945 0.72 +0.7 803,687 + HMPREF1058_RS15945 0.72 -0.1 803,688 - HMPREF1058_RS15945 0.72 -0.6 803,706 + HMPREF1058_RS15945 0.73 +0.5 803,734 - HMPREF1058_RS15945 0.74 -1.2 803,739 - HMPREF1058_RS15945 0.74 +0.6 803,808 + HMPREF1058_RS15945 0.76 -1.4 803,809 - HMPREF1058_RS15945 0.76 -0.1 803,851 + HMPREF1058_RS15945 0.78 +0.5 803,857 - HMPREF1058_RS15945 0.78 -0.2 803,857 - HMPREF1058_RS15945 0.78 +0.2 803,870 + HMPREF1058_RS15945 0.78 -0.1 803,908 - HMPREF1058_RS15945 0.80 +0.1 803,925 - HMPREF1058_RS15945 0.80 +0.1 803,928 + HMPREF1058_RS15945 0.80 -0.1 803,929 - HMPREF1058_RS15945 0.80 -0.5 804,035 - HMPREF1058_RS15945 0.84 -1.5 804,036 + HMPREF1058_RS15945 0.84 +0.1 804,037 - HMPREF1058_RS15945 0.84 -0.9 804,063 + HMPREF1058_RS15945 0.85 -0.4 804,090 - HMPREF1058_RS15945 0.86 -1.0 804,226 - -0.3 804,226 - +0.8 804,251 + -0.3 804,252 - -0.3 804,252 - -0.3 804,254 - -0.5 804,254 - -1.8 804,254 - +0.0 804,255 + -0.5 804,255 + +0.7 804,264 - +1.1 804,297 + -2.0 804,309 - -0.5 804,314 + -0.6 804,314 + +1.1 804,314 + +0.8 804,315 - +0.8 804,336 - +0.2 804,343 - -0.6 804,378 - +0.1 804,477 - -1.0 804,479 - -0.1 804,479 - -1.0 804,495 + -0.5 804,505 + +2.2 804,583 + -0.4
Or see this region's nucleotide sequence