Experiment: Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09165 and HMPREF1058_RS09160 are separated by 10 nucleotides HMPREF1058_RS09160 and HMPREF1058_RS09155 are separated by 122 nucleotides HMPREF1058_RS09155 and HMPREF1058_RS09150 are separated by 128 nucleotides
HMPREF1058_RS09165: HMPREF1058_RS09165 - SDR family NAD(P)-dependent oxidoreductase, at 921,969 to 922,697
_RS09165
HMPREF1058_RS09160: HMPREF1058_RS09160 - O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase, at 922,708 to 923,985
_RS09160
HMPREF1058_RS09155: HMPREF1058_RS09155 - acyl-CoA thioesterase, at 924,108 to 924,557
_RS09155
HMPREF1058_RS09150: HMPREF1058_RS09150 - RagB/SusD family nutrient uptake outer membrane protein, at 924,686 to 926,251
_RS09150
Position (kb) 922
923
924 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 921.748 kb on + strand at 921.757 kb on - strand at 922.053 kb on + strand, within HMPREF1058_RS09165 at 922.089 kb on + strand, within HMPREF1058_RS09165 at 922.197 kb on + strand, within HMPREF1058_RS09165 at 922.197 kb on + strand, within HMPREF1058_RS09165 at 922.237 kb on + strand, within HMPREF1058_RS09165 at 922.237 kb on + strand, within HMPREF1058_RS09165 at 922.323 kb on - strand, within HMPREF1058_RS09165 at 922.323 kb on - strand at 922.348 kb on + strand, within HMPREF1058_RS09165 at 922.348 kb on + strand, within HMPREF1058_RS09165 at 922.349 kb on - strand, within HMPREF1058_RS09165 at 922.413 kb on + strand, within HMPREF1058_RS09165 at 922.413 kb on + strand, within HMPREF1058_RS09165 at 922.551 kb on + strand, within HMPREF1058_RS09165 at 922.551 kb on + strand, within HMPREF1058_RS09165 at 922.551 kb on + strand, within HMPREF1058_RS09165 at 922.551 kb on + strand, within HMPREF1058_RS09165 at 922.552 kb on - strand, within HMPREF1058_RS09165 at 922.552 kb on - strand, within HMPREF1058_RS09165 at 922.552 kb on - strand, within HMPREF1058_RS09165 at 922.552 kb on - strand, within HMPREF1058_RS09165 at 922.552 kb on - strand, within HMPREF1058_RS09165 at 922.683 kb on - strand at 922.748 kb on - strand at 922.860 kb on + strand, within HMPREF1058_RS09160 at 922.860 kb on + strand, within HMPREF1058_RS09160 at 922.860 kb on + strand, within HMPREF1058_RS09160 at 922.860 kb on + strand, within HMPREF1058_RS09160 at 922.982 kb on + strand, within HMPREF1058_RS09160 at 922.982 kb on + strand, within HMPREF1058_RS09160 at 922.983 kb on - strand, within HMPREF1058_RS09160 at 923.028 kb on - strand, within HMPREF1058_RS09160 at 923.233 kb on - strand, within HMPREF1058_RS09160 at 923.234 kb on + strand, within HMPREF1058_RS09160 at 923.360 kb on + strand, within HMPREF1058_RS09160 at 923.472 kb on + strand, within HMPREF1058_RS09160 at 923.566 kb on + strand, within HMPREF1058_RS09160 at 923.650 kb on - strand, within HMPREF1058_RS09160 at 923.675 kb on - strand, within HMPREF1058_RS09160 at 923.701 kb on - strand, within HMPREF1058_RS09160 at 923.822 kb on + strand, within HMPREF1058_RS09160 at 923.823 kb on - strand, within HMPREF1058_RS09160 at 923.879 kb on + strand at 923.973 kb on - strand at 923.973 kb on - strand at 923.991 kb on + strand at 924.006 kb on + strand at 924.010 kb on + strand at 924.011 kb on - strand at 924.034 kb on + strand at 924.104 kb on - strand at 924.134 kb on + strand at 924.135 kb on - strand at 924.138 kb on - strand at 924.182 kb on + strand, within HMPREF1058_RS09155 at 924.183 kb on - strand, within HMPREF1058_RS09155 at 924.227 kb on + strand, within HMPREF1058_RS09155 at 924.231 kb on + strand, within HMPREF1058_RS09155 at 924.231 kb on + strand, within HMPREF1058_RS09155 at 924.235 kb on + strand, within HMPREF1058_RS09155 at 924.236 kb on - strand, within HMPREF1058_RS09155 at 924.236 kb on - strand, within HMPREF1058_RS09155 at 924.236 kb on - strand, within HMPREF1058_RS09155 at 924.245 kb on - strand, within HMPREF1058_RS09155 at 924.248 kb on - strand, within HMPREF1058_RS09155 at 924.248 kb on - strand, within HMPREF1058_RS09155 at 924.341 kb on - strand, within HMPREF1058_RS09155 at 924.445 kb on + strand, within HMPREF1058_RS09155 at 924.446 kb on - strand, within HMPREF1058_RS09155 at 924.446 kb on - strand, within HMPREF1058_RS09155 at 924.446 kb on - strand, within HMPREF1058_RS09155 at 924.492 kb on + strand, within HMPREF1058_RS09155 at 924.493 kb on - strand, within HMPREF1058_RS09155 at 924.555 kb on + strand at 924.556 kb on - strand at 924.593 kb on + strand at 924.595 kb on + strand at 924.595 kb on + strand at 924.601 kb on + strand at 924.616 kb on + strand at 924.643 kb on - strand at 924.748 kb on + strand at 924.766 kb on + strand at 924.807 kb on + strand at 924.863 kb on + strand, within HMPREF1058_RS09150 at 924.939 kb on + strand, within HMPREF1058_RS09150 at 924.981 kb on + strand, within HMPREF1058_RS09150
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C) remove 921,748 + -0.0 921,757 - -0.7 922,053 + HMPREF1058_RS09165 0.12 -0.0 922,089 + HMPREF1058_RS09165 0.16 +0.5 922,197 + HMPREF1058_RS09165 0.31 -0.8 922,197 + HMPREF1058_RS09165 0.31 +0.6 922,237 + HMPREF1058_RS09165 0.37 +0.7 922,237 + HMPREF1058_RS09165 0.37 -0.5 922,323 - HMPREF1058_RS09165 0.49 -0.6 922,323 - +1.2 922,348 + HMPREF1058_RS09165 0.52 -0.7 922,348 + HMPREF1058_RS09165 0.52 -0.4 922,349 - HMPREF1058_RS09165 0.52 +0.1 922,413 + HMPREF1058_RS09165 0.61 -0.4 922,413 + HMPREF1058_RS09165 0.61 -0.7 922,551 + HMPREF1058_RS09165 0.80 -0.2 922,551 + HMPREF1058_RS09165 0.80 +0.3 922,551 + HMPREF1058_RS09165 0.80 -0.0 922,551 + HMPREF1058_RS09165 0.80 +0.9 922,552 - HMPREF1058_RS09165 0.80 -0.4 922,552 - HMPREF1058_RS09165 0.80 +0.4 922,552 - HMPREF1058_RS09165 0.80 -0.2 922,552 - HMPREF1058_RS09165 0.80 -0.5 922,552 - HMPREF1058_RS09165 0.80 -0.7 922,683 - -0.2 922,748 - -0.6 922,860 + HMPREF1058_RS09160 0.12 -0.9 922,860 + HMPREF1058_RS09160 0.12 +1.2 922,860 + HMPREF1058_RS09160 0.12 +1.3 922,860 + HMPREF1058_RS09160 0.12 -0.2 922,982 + HMPREF1058_RS09160 0.21 -0.1 922,982 + HMPREF1058_RS09160 0.21 -1.3 922,983 - HMPREF1058_RS09160 0.22 -2.7 923,028 - HMPREF1058_RS09160 0.25 +0.3 923,233 - HMPREF1058_RS09160 0.41 +4.1 923,234 + HMPREF1058_RS09160 0.41 -0.3 923,360 + HMPREF1058_RS09160 0.51 +0.4 923,472 + HMPREF1058_RS09160 0.60 -1.5 923,566 + HMPREF1058_RS09160 0.67 +0.0 923,650 - HMPREF1058_RS09160 0.74 +3.6 923,675 - HMPREF1058_RS09160 0.76 -0.0 923,701 - HMPREF1058_RS09160 0.78 +0.1 923,822 + HMPREF1058_RS09160 0.87 -0.2 923,823 - HMPREF1058_RS09160 0.87 +0.6 923,879 + -0.5 923,973 - +0.8 923,973 - +1.3 923,991 + +1.5 924,006 + -0.5 924,010 + +0.5 924,011 - +0.3 924,034 + -0.1 924,104 - -0.7 924,134 + -1.3 924,135 - -1.0 924,138 - -2.3 924,182 + HMPREF1058_RS09155 0.16 -1.0 924,183 - HMPREF1058_RS09155 0.17 +0.2 924,227 + HMPREF1058_RS09155 0.26 -0.0 924,231 + HMPREF1058_RS09155 0.27 -0.4 924,231 + HMPREF1058_RS09155 0.27 +0.0 924,235 + HMPREF1058_RS09155 0.28 -0.6 924,236 - HMPREF1058_RS09155 0.28 -0.1 924,236 - HMPREF1058_RS09155 0.28 +0.5 924,236 - HMPREF1058_RS09155 0.28 +0.5 924,245 - HMPREF1058_RS09155 0.30 +0.2 924,248 - HMPREF1058_RS09155 0.31 -0.3 924,248 - HMPREF1058_RS09155 0.31 -0.1 924,341 - HMPREF1058_RS09155 0.52 -0.1 924,445 + HMPREF1058_RS09155 0.75 +0.3 924,446 - HMPREF1058_RS09155 0.75 -0.2 924,446 - HMPREF1058_RS09155 0.75 +0.2 924,446 - HMPREF1058_RS09155 0.75 -1.1 924,492 + HMPREF1058_RS09155 0.85 +0.5 924,493 - HMPREF1058_RS09155 0.86 -0.0 924,555 + +0.2 924,556 - -0.5 924,593 + -0.4 924,595 + -0.1 924,595 + -0.2 924,601 + -1.2 924,616 + +0.5 924,643 - -0.7 924,748 + -0.1 924,766 + -0.4 924,807 + -0.3 924,863 + HMPREF1058_RS09150 0.11 -0.3 924,939 + HMPREF1058_RS09150 0.16 +0.2 924,981 + HMPREF1058_RS09150 0.19 +0.6
Or see this region's nucleotide sequence