Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12590 and HMPREF1058_RS12585 are separated by 385 nucleotides HMPREF1058_RS12585 and HMPREF1058_RS12580 are separated by 126 nucleotides HMPREF1058_RS12580 and HMPREF1058_RS12575 are separated by 184 nucleotides
HMPREF1058_RS12590: HMPREF1058_RS12590 - transposase, at 73,548 to 74,468
_RS12590
HMPREF1058_RS12585: HMPREF1058_RS12585 - IS1182 family transposase, at 74,854 to 75,257
_RS12585
HMPREF1058_RS12580: HMPREF1058_RS12580 - tRNA-Leu, at 75,384 to 75,467
_RS12580
HMPREF1058_RS12575: HMPREF1058_RS12575 - mannose-1-phosphate guanylyltransferase, at 75,652 to 76,695
_RS12575
Position (kb) 75
76 Strain fitness (log2 ratio) -2
-1
0
1 at 74.400 kb on - strand at 74.525 kb on + strand at 74.530 kb on - strand at 74.590 kb on - strand at 75.352 kb on + strand at 75.568 kb on + strand at 75.568 kb on + strand at 75.569 kb on - strand at 75.569 kb on - strand at 75.570 kb on + strand at 75.580 kb on + strand at 75.581 kb on - strand at 75.646 kb on + strand at 75.647 kb on - strand at 75.647 kb on - strand at 75.649 kb on - strand at 75.693 kb on + strand at 75.693 kb on + strand at 75.694 kb on - strand at 75.695 kb on + strand at 75.695 kb on + strand at 75.715 kb on + strand at 75.718 kb on - strand at 75.843 kb on - strand, within HMPREF1058_RS12575 at 75.847 kb on + strand, within HMPREF1058_RS12575 at 75.848 kb on - strand, within HMPREF1058_RS12575 at 75.934 kb on - strand, within HMPREF1058_RS12575 at 75.949 kb on + strand, within HMPREF1058_RS12575 at 75.954 kb on + strand, within HMPREF1058_RS12575 at 76.088 kb on + strand, within HMPREF1058_RS12575 at 76.089 kb on - strand, within HMPREF1058_RS12575 at 76.089 kb on - strand, within HMPREF1058_RS12575 at 76.089 kb on - strand, within HMPREF1058_RS12575 at 76.089 kb on - strand, within HMPREF1058_RS12575 at 76.093 kb on - strand, within HMPREF1058_RS12575 at 76.126 kb on + strand, within HMPREF1058_RS12575 at 76.127 kb on - strand, within HMPREF1058_RS12575 at 76.170 kb on - strand, within HMPREF1058_RS12575 at 76.250 kb on + strand, within HMPREF1058_RS12575 at 76.251 kb on - strand, within HMPREF1058_RS12575 at 76.263 kb on + strand, within HMPREF1058_RS12575 at 76.264 kb on - strand, within HMPREF1058_RS12575 at 76.270 kb on - strand, within HMPREF1058_RS12575 at 76.356 kb on + strand, within HMPREF1058_RS12575 at 76.433 kb on + strand, within HMPREF1058_RS12575 at 76.434 kb on - strand, within HMPREF1058_RS12575 at 76.434 kb on - strand, within HMPREF1058_RS12575 at 76.454 kb on - strand, within HMPREF1058_RS12575 at 76.454 kb on - strand, within HMPREF1058_RS12575 at 76.460 kb on + strand, within HMPREF1058_RS12575 at 76.460 kb on + strand, within HMPREF1058_RS12575
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) remove 74,400 - -1.0 74,525 + +0.2 74,530 - +0.7 74,590 - +0.3 75,352 + +1.6 75,568 + -1.4 75,568 + -0.4 75,569 - -1.1 75,569 - -0.5 75,570 + -0.6 75,580 + -1.3 75,581 - -1.2 75,646 + -0.3 75,647 - -0.4 75,647 - -1.3 75,649 - -0.9 75,693 + -1.2 75,693 + -0.1 75,694 - -0.4 75,695 + -0.6 75,695 + -1.0 75,715 + +0.8 75,718 - -2.2 75,843 - HMPREF1058_RS12575 0.18 -0.3 75,847 + HMPREF1058_RS12575 0.19 +0.1 75,848 - HMPREF1058_RS12575 0.19 +0.2 75,934 - HMPREF1058_RS12575 0.27 -1.5 75,949 + HMPREF1058_RS12575 0.28 -1.2 75,954 + HMPREF1058_RS12575 0.29 -0.6 76,088 + HMPREF1058_RS12575 0.42 -0.8 76,089 - HMPREF1058_RS12575 0.42 -0.8 76,089 - HMPREF1058_RS12575 0.42 +0.1 76,089 - HMPREF1058_RS12575 0.42 -0.3 76,089 - HMPREF1058_RS12575 0.42 -0.8 76,093 - HMPREF1058_RS12575 0.42 -0.8 76,126 + HMPREF1058_RS12575 0.45 -0.6 76,127 - HMPREF1058_RS12575 0.45 +0.7 76,170 - HMPREF1058_RS12575 0.50 -1.8 76,250 + HMPREF1058_RS12575 0.57 -1.1 76,251 - HMPREF1058_RS12575 0.57 -0.4 76,263 + HMPREF1058_RS12575 0.59 -0.9 76,264 - HMPREF1058_RS12575 0.59 -2.0 76,270 - HMPREF1058_RS12575 0.59 -0.5 76,356 + HMPREF1058_RS12575 0.67 -2.1 76,433 + HMPREF1058_RS12575 0.75 -1.0 76,434 - HMPREF1058_RS12575 0.75 -0.9 76,434 - HMPREF1058_RS12575 0.75 -0.5 76,454 - HMPREF1058_RS12575 0.77 -0.4 76,454 - HMPREF1058_RS12575 0.77 -0.6 76,460 + HMPREF1058_RS12575 0.77 -0.3 76,460 + HMPREF1058_RS12575 0.77 -0.9
Or see this region's nucleotide sequence