Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06545 and HMPREF1058_RS06540 are separated by 108 nucleotides HMPREF1058_RS06540 and HMPREF1058_RS06535 are separated by 55 nucleotides HMPREF1058_RS06535 and HMPREF1058_RS06530 are separated by 85 nucleotides
HMPREF1058_RS06545: HMPREF1058_RS06545 - transcriptional regulator, at 452,741 to 453,838
_RS06545
HMPREF1058_RS06540: HMPREF1058_RS06540 - hypothetical protein, at 453,947 to 454,168
_RS06540
HMPREF1058_RS06535: HMPREF1058_RS06535 - hypothetical protein, at 454,224 to 454,433
_RS06535
HMPREF1058_RS06530: HMPREF1058_RS06530 - flippase, at 454,519 to 455,991
_RS06530
Position (kb) 454
455 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 453.399 kb on + strand, within HMPREF1058_RS06545 at 453.399 kb on + strand, within HMPREF1058_RS06545 at 453.399 kb on + strand, within HMPREF1058_RS06545 at 453.399 kb on + strand, within HMPREF1058_RS06545 at 453.399 kb on + strand, within HMPREF1058_RS06545 at 453.399 kb on + strand, within HMPREF1058_RS06545 at 453.400 kb on - strand, within HMPREF1058_RS06545 at 453.400 kb on - strand at 453.400 kb on - strand, within HMPREF1058_RS06545 at 453.400 kb on - strand, within HMPREF1058_RS06545 at 453.400 kb on - strand, within HMPREF1058_RS06545 at 453.400 kb on - strand, within HMPREF1058_RS06545 at 453.401 kb on + strand, within HMPREF1058_RS06545 at 453.424 kb on + strand, within HMPREF1058_RS06545 at 453.424 kb on + strand, within HMPREF1058_RS06545 at 453.567 kb on - strand, within HMPREF1058_RS06545 at 453.587 kb on + strand, within HMPREF1058_RS06545 at 453.587 kb on + strand, within HMPREF1058_RS06545 at 453.589 kb on + strand, within HMPREF1058_RS06545 at 453.589 kb on + strand, within HMPREF1058_RS06545 at 453.590 kb on - strand, within HMPREF1058_RS06545 at 453.590 kb on - strand, within HMPREF1058_RS06545 at 453.592 kb on + strand, within HMPREF1058_RS06545 at 453.592 kb on + strand, within HMPREF1058_RS06545 at 453.593 kb on - strand, within HMPREF1058_RS06545 at 453.643 kb on + strand, within HMPREF1058_RS06545 at 453.722 kb on + strand, within HMPREF1058_RS06545 at 453.722 kb on + strand, within HMPREF1058_RS06545 at 453.722 kb on + strand, within HMPREF1058_RS06545 at 453.723 kb on - strand, within HMPREF1058_RS06545 at 453.816 kb on - strand at 453.850 kb on - strand at 453.939 kb on + strand at 454.052 kb on + strand, within HMPREF1058_RS06540 at 454.053 kb on - strand, within HMPREF1058_RS06540 at 454.053 kb on - strand, within HMPREF1058_RS06540 at 454.085 kb on - strand, within HMPREF1058_RS06540 at 454.157 kb on + strand at 454.158 kb on - strand at 454.159 kb on + strand at 454.171 kb on + strand at 454.171 kb on + strand at 454.171 kb on + strand at 454.172 kb on - strand at 454.200 kb on + strand at 454.257 kb on - strand, within HMPREF1058_RS06535 at 454.262 kb on - strand, within HMPREF1058_RS06535 at 454.262 kb on - strand, within HMPREF1058_RS06535 at 454.292 kb on - strand, within HMPREF1058_RS06535 at 454.294 kb on + strand, within HMPREF1058_RS06535 at 454.294 kb on + strand, within HMPREF1058_RS06535 at 454.295 kb on - strand, within HMPREF1058_RS06535 at 454.316 kb on + strand, within HMPREF1058_RS06535 at 454.393 kb on + strand, within HMPREF1058_RS06535 at 454.393 kb on + strand, within HMPREF1058_RS06535 at 454.393 kb on + strand, within HMPREF1058_RS06535 at 454.394 kb on - strand at 454.394 kb on - strand, within HMPREF1058_RS06535 at 454.423 kb on + strand at 454.501 kb on - strand at 454.507 kb on + strand at 454.507 kb on + strand at 454.509 kb on + strand at 454.510 kb on - strand at 454.511 kb on + strand at 454.511 kb on + strand at 454.512 kb on - strand at 454.533 kb on - strand at 454.544 kb on - strand at 454.706 kb on - strand, within HMPREF1058_RS06530 at 454.706 kb on - strand, within HMPREF1058_RS06530 at 454.706 kb on - strand, within HMPREF1058_RS06530 at 454.706 kb on - strand, within HMPREF1058_RS06530 at 454.706 kb on - strand, within HMPREF1058_RS06530 at 454.706 kb on - strand, within HMPREF1058_RS06530 at 454.712 kb on + strand, within HMPREF1058_RS06530 at 454.782 kb on - strand, within HMPREF1058_RS06530 at 454.795 kb on - strand, within HMPREF1058_RS06530 at 454.810 kb on - strand, within HMPREF1058_RS06530 at 454.842 kb on + strand, within HMPREF1058_RS06530 at 454.843 kb on - strand, within HMPREF1058_RS06530 at 454.860 kb on - strand, within HMPREF1058_RS06530 at 454.971 kb on - strand, within HMPREF1058_RS06530 at 454.987 kb on - strand, within HMPREF1058_RS06530 at 455.027 kb on + strand, within HMPREF1058_RS06530 at 455.033 kb on - strand, within HMPREF1058_RS06530 at 455.113 kb on - strand, within HMPREF1058_RS06530 at 455.163 kb on - strand, within HMPREF1058_RS06530 at 455.167 kb on - strand, within HMPREF1058_RS06530 at 455.167 kb on - strand, within HMPREF1058_RS06530 at 455.197 kb on + strand, within HMPREF1058_RS06530 at 455.198 kb on - strand, within HMPREF1058_RS06530 at 455.216 kb on + strand, within HMPREF1058_RS06530 at 455.290 kb on - strand, within HMPREF1058_RS06530 at 455.318 kb on + strand, within HMPREF1058_RS06530 at 455.319 kb on - strand, within HMPREF1058_RS06530 at 455.400 kb on + strand, within HMPREF1058_RS06530 at 455.406 kb on - strand, within HMPREF1058_RS06530
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) remove 453,399 + HMPREF1058_RS06545 0.60 +2.7 453,399 + HMPREF1058_RS06545 0.60 +1.2 453,399 + HMPREF1058_RS06545 0.60 +2.0 453,399 + HMPREF1058_RS06545 0.60 +2.3 453,399 + HMPREF1058_RS06545 0.60 +2.5 453,399 + HMPREF1058_RS06545 0.60 +1.7 453,400 - HMPREF1058_RS06545 0.60 +0.7 453,400 - -0.9 453,400 - HMPREF1058_RS06545 0.60 +2.4 453,400 - HMPREF1058_RS06545 0.60 +1.8 453,400 - HMPREF1058_RS06545 0.60 -0.8 453,400 - HMPREF1058_RS06545 0.60 +2.3 453,401 + HMPREF1058_RS06545 0.60 +2.1 453,424 + HMPREF1058_RS06545 0.62 +2.3 453,424 + HMPREF1058_RS06545 0.62 +4.5 453,567 - HMPREF1058_RS06545 0.75 +0.4 453,587 + HMPREF1058_RS06545 0.77 +1.1 453,587 + HMPREF1058_RS06545 0.77 +1.5 453,589 + HMPREF1058_RS06545 0.77 +1.9 453,589 + HMPREF1058_RS06545 0.77 +0.3 453,590 - HMPREF1058_RS06545 0.77 +1.2 453,590 - HMPREF1058_RS06545 0.77 +2.0 453,592 + HMPREF1058_RS06545 0.78 +1.4 453,592 + HMPREF1058_RS06545 0.78 +2.0 453,593 - HMPREF1058_RS06545 0.78 -0.1 453,643 + HMPREF1058_RS06545 0.82 -1.7 453,722 + HMPREF1058_RS06545 0.89 +1.3 453,722 + HMPREF1058_RS06545 0.89 +1.7 453,722 + HMPREF1058_RS06545 0.89 +0.5 453,723 - HMPREF1058_RS06545 0.89 +1.9 453,816 - +1.7 453,850 - +1.5 453,939 + +1.4 454,052 + HMPREF1058_RS06540 0.47 -1.5 454,053 - HMPREF1058_RS06540 0.48 +2.0 454,053 - HMPREF1058_RS06540 0.48 -0.2 454,085 - HMPREF1058_RS06540 0.62 +1.5 454,157 + +0.4 454,158 - +1.6 454,159 + -1.7 454,171 + -0.4 454,171 + -0.3 454,171 + -0.8 454,172 - +3.5 454,200 + -0.2 454,257 - HMPREF1058_RS06535 0.16 +1.9 454,262 - HMPREF1058_RS06535 0.18 +4.1 454,262 - HMPREF1058_RS06535 0.18 +1.3 454,292 - HMPREF1058_RS06535 0.32 +2.0 454,294 + HMPREF1058_RS06535 0.33 -0.2 454,294 + HMPREF1058_RS06535 0.33 -1.7 454,295 - HMPREF1058_RS06535 0.34 +1.0 454,316 + HMPREF1058_RS06535 0.44 -0.0 454,393 + HMPREF1058_RS06535 0.80 +3.0 454,393 + HMPREF1058_RS06535 0.80 +0.2 454,393 + HMPREF1058_RS06535 0.80 +0.5 454,394 - +3.3 454,394 - HMPREF1058_RS06535 0.81 +2.2 454,423 + +1.2 454,501 - +2.7 454,507 + +2.1 454,507 + +0.3 454,509 + +0.6 454,510 - +0.7 454,511 + +0.7 454,511 + +0.3 454,512 - +1.7 454,533 - +1.3 454,544 - +0.0 454,706 - HMPREF1058_RS06530 0.13 +1.4 454,706 - HMPREF1058_RS06530 0.13 +2.0 454,706 - HMPREF1058_RS06530 0.13 +2.0 454,706 - HMPREF1058_RS06530 0.13 +1.3 454,706 - HMPREF1058_RS06530 0.13 +3.5 454,706 - HMPREF1058_RS06530 0.13 +2.3 454,712 + HMPREF1058_RS06530 0.13 -0.5 454,782 - HMPREF1058_RS06530 0.18 +2.6 454,795 - HMPREF1058_RS06530 0.19 -0.3 454,810 - HMPREF1058_RS06530 0.20 +0.5 454,842 + HMPREF1058_RS06530 0.22 +0.3 454,843 - HMPREF1058_RS06530 0.22 +2.0 454,860 - HMPREF1058_RS06530 0.23 +1.7 454,971 - HMPREF1058_RS06530 0.31 +2.1 454,987 - HMPREF1058_RS06530 0.32 +1.7 455,027 + HMPREF1058_RS06530 0.34 +0.7 455,033 - HMPREF1058_RS06530 0.35 +1.0 455,113 - HMPREF1058_RS06530 0.40 +0.9 455,163 - HMPREF1058_RS06530 0.44 +1.3 455,167 - HMPREF1058_RS06530 0.44 +1.9 455,167 - HMPREF1058_RS06530 0.44 -0.4 455,197 + HMPREF1058_RS06530 0.46 -0.2 455,198 - HMPREF1058_RS06530 0.46 +0.1 455,216 + HMPREF1058_RS06530 0.47 +0.7 455,290 - HMPREF1058_RS06530 0.52 +1.4 455,318 + HMPREF1058_RS06530 0.54 -0.9 455,319 - HMPREF1058_RS06530 0.54 +1.3 455,400 + HMPREF1058_RS06530 0.60 -1.1 455,406 - HMPREF1058_RS06530 0.60 -0.9
Or see this region's nucleotide sequence