Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03960 and HMPREF1058_RS03955 are separated by 11 nucleotides HMPREF1058_RS03955 and HMPREF1058_RS03950 are separated by 57 nucleotides HMPREF1058_RS03950 and HMPREF1058_RS03945 are separated by 100 nucleotides
HMPREF1058_RS03960: HMPREF1058_RS03960 - DNA polymerase III subunit delta, at 150,907 to 151,923
_RS03960
HMPREF1058_RS03955: HMPREF1058_RS03955 - AMP nucleosidase, at 151,935 to 152,711
_RS03955
HMPREF1058_RS03950: HMPREF1058_RS03950 - type I restriction enzyme HsdR N-terminal domain-containing protein, at 152,769 to 153,218
_RS03950
HMPREF1058_RS03945: HMPREF1058_RS03945 - hypothetical protein, at 153,319 to 154,110
_RS03945
Position (kb) 151
152
153 Strain fitness (log2 ratio) -1
0
1 at 152.991 kb on - strand, within HMPREF1058_RS03950 at 153.051 kb on - strand, within HMPREF1058_RS03950 at 153.053 kb on - strand, within HMPREF1058_RS03950 at 153.093 kb on - strand, within HMPREF1058_RS03950 at 153.093 kb on - strand, within HMPREF1058_RS03950 at 153.093 kb on - strand, within HMPREF1058_RS03950 at 153.205 kb on - strand at 153.216 kb on + strand at 153.222 kb on + strand at 153.223 kb on - strand at 153.301 kb on - strand at 153.301 kb on - strand at 153.316 kb on - strand at 153.317 kb on + strand at 153.318 kb on - strand at 153.320 kb on + strand at 153.321 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) remove 152,991 - HMPREF1058_RS03950 0.49 +1.2 153,051 - HMPREF1058_RS03950 0.63 +1.2 153,053 - HMPREF1058_RS03950 0.63 +0.9 153,093 - HMPREF1058_RS03950 0.72 +1.0 153,093 - HMPREF1058_RS03950 0.72 +0.7 153,093 - HMPREF1058_RS03950 0.72 +0.1 153,205 - -0.2 153,216 + +0.7 153,222 + +0.2 153,223 - +0.8 153,301 - +0.5 153,301 - +0.6 153,316 - +1.2 153,317 + +0.5 153,318 - +1.1 153,320 + +0.8 153,321 - -0.3
Or see this region's nucleotide sequence