Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS01720

Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
58,269	-		HMPREF1058_RS01725	0.45	+0.2
58,379	-		HMPREF1058_RS01725	0.52	+1.8
58,517	+		HMPREF1058_RS01725	0.60	-0.7
58,595	+		HMPREF1058_RS01725	0.65	+0.8
58,632	-		HMPREF1058_RS01725	0.67	+4.6
58,634	+		HMPREF1058_RS01725	0.67	-0.8
58,635	-		HMPREF1058_RS01725	0.67	-0.8
58,643	+		HMPREF1058_RS01725	0.68	+1.8
58,723	+		HMPREF1058_RS01725	0.72	+0.4
58,723	+		HMPREF1058_RS01725	0.72	-0.5
58,801	+		HMPREF1058_RS01725	0.77	+0.8
58,841	+		HMPREF1058_RS01725	0.80	-0.5
58,914	+		HMPREF1058_RS01725	0.84	+0.6
58,992	+		HMPREF1058_RS01725	0.89	-0.5
59,054	+				-1.1
59,194	+				+1.7
59,194	+				+1.0
59,194	+				-0.3
59,194	-				+2.4
59,195	-				+0.2
59,195	-				+0.1
59,195	-				-0.2
59,196	+				+2.2
59,197	-				+1.1
59,198	+				-0.3
59,285	+				-0.2
59,361	+		HMPREF1058_RS01720	0.19	+0.7
59,362	-		HMPREF1058_RS01720	0.19	-0.5
59,362	-		HMPREF1058_RS01720	0.19	+0.2
59,557	+		HMPREF1058_RS01720	0.50	-2.9
59,561	-		HMPREF1058_RS01720	0.51	-1.3
59,586	-		HMPREF1058_RS01720	0.55	+0.7
59,723	+		HMPREF1058_RS01720	0.77	-0.1
59,723	+		HMPREF1058_RS01720	0.77	-0.2
59,759	-		HMPREF1058_RS01720	0.83	+0.7
59,791	+		HMPREF1058_RS01720	0.88	+1.1
59,819	+				-0.5
59,912	+				-1.3
59,917	+		HMPREF1058_RS01715	0.20	+2.6
59,918	-		HMPREF1058_RS01715	0.20	+0.8
59,933	+		HMPREF1058_RS01715	0.26	+0.0
60,049	+		HMPREF1058_RS01715	0.67	-0.1
60,089	+		HMPREF1058_RS01715	0.82	+2.6
60,089	+		HMPREF1058_RS01715	0.82	-1.8
60,089	+		HMPREF1058_RS01715	0.82	+0.8
60,089	+		HMPREF1058_RS01715	0.82	+0.0
60,090	-		HMPREF1058_RS01715	0.82	+0.3
60,094	-		HMPREF1058_RS01715	0.84	-0.3
60,094	-		HMPREF1058_RS01715	0.84	+0.8
60,099	-		HMPREF1058_RS01715	0.85	+0.2
60,118	+				+0.1
60,119	-				-0.3
60,126	-				-0.7
60,127	+				+0.2
60,127	+				+2.9
60,127	+				+0.5
60,127	+				-0.9
60,128	-				-0.2
60,128	-				+0.1
60,131	-				-0.2
60,133	+				-0.9
60,167	+				-0.6
60,207	+				-1.0
60,207	+				+0.4
60,208	-				+0.1
60,208	-				-1.0
60,210	-				+1.4
60,210	-				+0.9
60,300	+				-0.8
60,301	-				+0.8
60,321	-				-0.3
60,344	+				-0.5
60,344	+				+0.8
60,354	+				+0.2
60,354	+				+0.0
60,354	+				+0.3
60,355	-				-0.6
60,355	-				-0.1
60,362	-				+0.2
60,362	-				+0.1
60,362	-				-0.6
60,362	-				+0.2
60,366	-				-0.2
60,366	-				+0.7
60,424	+				-0.2
60,447	+				-1.2
60,495	+				-1.1
60,495	+				-1.5
60,496	-				-1.3
60,589	-				+0.2
60,620	-				+0.9
60,696	-				-0.3
60,697	+				+1.0
60,733	-				+2.5
60,858	+		HMPREF1058_RS01710	0.12	+1.4
60,858	+		HMPREF1058_RS01710	0.12	-1.6
60,859	-		HMPREF1058_RS01710	0.12	-0.3
60,861	-		HMPREF1058_RS01710	0.12	+0.2