Experiment: (+)-Arabinogalactan; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05790 and HMPREF1058_RS21630 are separated by 172 nucleotides HMPREF1058_RS21630 and HMPREF1058_RS05785 are separated by 344 nucleotides
HMPREF1058_RS05790: HMPREF1058_RS05790 - hypothetical protein, at 79,522 to 79,743
_RS05790
HMPREF1058_RS21630: HMPREF1058_RS21630 - hypothetical protein, at 79,916 to 80,092
_RS21630
HMPREF1058_RS05785: HMPREF1058_RS05785 - adenine nucleotide alpha hydrolase family protein, at 80,437 to 81,192
_RS05785
Position (kb) 79
80
81 Strain fitness (log2 ratio) -2
-1
0
1
2 at 79.087 kb on - strand at 79.118 kb on - strand at 79.134 kb on + strand at 79.135 kb on - strand at 79.458 kb on + strand at 79.487 kb on - strand at 79.517 kb on - strand at 79.596 kb on + strand, within HMPREF1058_RS05790 at 79.597 kb on - strand, within HMPREF1058_RS05790 at 79.656 kb on + strand, within HMPREF1058_RS05790 at 79.742 kb on - strand at 79.744 kb on + strand at 79.745 kb on - strand at 79.748 kb on + strand at 79.821 kb on - strand at 79.823 kb on - strand at 79.842 kb on + strand at 79.843 kb on - strand at 79.964 kb on - strand, within HMPREF1058_RS21630 at 80.021 kb on + strand, within HMPREF1058_RS21630 at 80.021 kb on + strand, within HMPREF1058_RS21630 at 80.022 kb on - strand, within HMPREF1058_RS21630 at 80.023 kb on + strand, within HMPREF1058_RS21630 at 80.023 kb on + strand at 80.024 kb on - strand, within HMPREF1058_RS21630 at 80.024 kb on - strand, within HMPREF1058_RS21630 at 80.024 kb on - strand, within HMPREF1058_RS21630 at 80.051 kb on + strand, within HMPREF1058_RS21630 at 80.070 kb on - strand, within HMPREF1058_RS21630 at 80.098 kb on - strand at 80.177 kb on - strand at 80.197 kb on - strand at 80.267 kb on + strand at 80.268 kb on - strand at 80.268 kb on - strand at 80.315 kb on + strand at 80.315 kb on + strand at 80.333 kb on - strand at 80.337 kb on - strand at 80.348 kb on - strand at 80.387 kb on - strand at 80.391 kb on - strand at 80.392 kb on + strand at 80.407 kb on + strand at 80.441 kb on - strand at 80.506 kb on - strand at 80.540 kb on + strand, within HMPREF1058_RS05785 at 80.542 kb on + strand, within HMPREF1058_RS05785 at 80.557 kb on - strand, within HMPREF1058_RS05785 at 80.671 kb on - strand, within HMPREF1058_RS05785 at 80.715 kb on + strand, within HMPREF1058_RS05785 at 80.739 kb on + strand, within HMPREF1058_RS05785 at 80.923 kb on + strand, within HMPREF1058_RS05785 at 80.948 kb on + strand, within HMPREF1058_RS05785 at 80.974 kb on - strand, within HMPREF1058_RS05785 at 80.986 kb on + strand, within HMPREF1058_RS05785 at 80.987 kb on - strand, within HMPREF1058_RS05785 at 81.086 kb on - strand, within HMPREF1058_RS05785
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan; filtered 2.5 mg/ml (C) remove 79,087 - +1.3 79,118 - -1.3 79,134 + -1.2 79,135 - +0.9 79,458 + -0.7 79,487 - +0.3 79,517 - -2.6 79,596 + HMPREF1058_RS05790 0.33 +1.2 79,597 - HMPREF1058_RS05790 0.34 -0.2 79,656 + HMPREF1058_RS05790 0.60 +1.7 79,742 - -0.6 79,744 + +0.2 79,745 - +1.5 79,748 + +1.4 79,821 - +1.3 79,823 - -0.6 79,842 + +1.1 79,843 - -0.5 79,964 - HMPREF1058_RS21630 0.27 +0.2 80,021 + HMPREF1058_RS21630 0.59 +0.9 80,021 + HMPREF1058_RS21630 0.59 -0.7 80,022 - HMPREF1058_RS21630 0.60 -1.1 80,023 + HMPREF1058_RS21630 0.60 -0.6 80,023 + -0.3 80,024 - HMPREF1058_RS21630 0.61 -1.0 80,024 - HMPREF1058_RS21630 0.61 +0.4 80,024 - HMPREF1058_RS21630 0.61 -0.5 80,051 + HMPREF1058_RS21630 0.76 -0.9 80,070 - HMPREF1058_RS21630 0.87 +2.0 80,098 - +0.9 80,177 - +1.2 80,197 - -1.6 80,267 + -0.4 80,268 - +0.0 80,268 - -2.1 80,315 + +0.1 80,315 + +0.1 80,333 - -0.1 80,337 - +0.2 80,348 - -0.6 80,387 - -2.0 80,391 - +0.9 80,392 + -0.9 80,407 + -0.5 80,441 - +0.3 80,506 - -2.0 80,540 + HMPREF1058_RS05785 0.14 +0.0 80,542 + HMPREF1058_RS05785 0.14 +2.6 80,557 - HMPREF1058_RS05785 0.16 +1.5 80,671 - HMPREF1058_RS05785 0.31 +0.5 80,715 + HMPREF1058_RS05785 0.37 +1.6 80,739 + HMPREF1058_RS05785 0.40 +0.2 80,923 + HMPREF1058_RS05785 0.64 -1.2 80,948 + HMPREF1058_RS05785 0.68 -0.1 80,974 - HMPREF1058_RS05785 0.71 +1.3 80,986 + HMPREF1058_RS05785 0.73 -1.6 80,987 - HMPREF1058_RS05785 0.73 +1.4 81,086 - HMPREF1058_RS05785 0.86 +0.9
Or see this region's nucleotide sequence