Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS21575

Experiment: (+)-Arabinogalactan; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	(+)-Arabinogalactan; filtered 2.5 mg/ml (C)
121,093	-		HMPREF1058_RS18595	0.68	+0.4
121,122	+		HMPREF1058_RS18595	0.70	+0.3
121,123	-		HMPREF1058_RS18595	0.70	-0.5
121,123	-		HMPREF1058_RS18595	0.70	+1.3
121,722	+				+1.2
121,722	+				-1.3
121,724	+				+0.3
121,724	+				+0.1
121,724	+				-0.9
121,724	+				+0.7
121,725	-				-0.3
121,789	+				+0.3
121,789	+				+0.3
121,820	-				-1.8
121,820	-				-0.7
121,854	-				-2.7
121,893	+				-0.9
121,900	-				-2.7
121,916	+				-1.6
121,959	+				-2.3
121,980	+				+0.5
121,983	+				-1.9
122,018	-				-1.4
122,023	+				-0.8
122,081	+				-0.2
122,081	+				-0.5
122,082	-				+0.6
122,240	+		HMPREF1058_RS21575	0.50	+3.6
122,296	-		HMPREF1058_RS21575	0.67	-0.2
122,398	+				+0.6
122,469	-				-1.9
122,490	-				-2.3
122,506	+				-0.3
122,508	+				-0.9
122,545	+				+0.3
122,546	-				+0.5
122,546	-				-0.6
122,629	+				-0.3
122,629	+				-0.2
122,634	-				+0.7
122,647	+				-0.9
122,716	-				-0.8
122,719	+				+0.7
122,814	+				-1.7
122,815	-				-0.2
122,824	+				+2.0
123,062	+		HMPREF1058_RS20205	0.17	+1.3
123,065	+		HMPREF1058_RS20205	0.17	-0.7
123,123	+		HMPREF1058_RS20205	0.21	-0.1
123,123	+		HMPREF1058_RS20205	0.21	-1.3
123,124	-		HMPREF1058_RS20205	0.21	-0.6
123,124	-		HMPREF1058_RS20205	0.21	-0.9
123,124	-		HMPREF1058_RS20205	0.21	+2.5
123,167	-		HMPREF1058_RS20205	0.24	+0.0
123,176	+		HMPREF1058_RS20205	0.25	-2.0
123,176	+		HMPREF1058_RS20205	0.25	-0.8
123,176	+		HMPREF1058_RS20205	0.25	-0.3
123,178	+		HMPREF1058_RS20205	0.25	+0.0
123,179	-		HMPREF1058_RS20205	0.25	+0.4
123,215	-		HMPREF1058_RS20205	0.27	+0.9
123,218	+		HMPREF1058_RS20205	0.28	+0.4
123,268	+		HMPREF1058_RS20205	0.31	+0.7
123,306	+		HMPREF1058_RS20205	0.34	+3.2
123,307	-		HMPREF1058_RS20205	0.34	-0.1
123,343	+		HMPREF1058_RS20205	0.36	-0.3
123,389	+		HMPREF1058_RS20205	0.39	+0.9
123,389	+		HMPREF1058_RS20205	0.39	+0.9
123,390	-		HMPREF1058_RS20205	0.39	+0.4
123,390	-		HMPREF1058_RS20205	0.39	-0.4