Experiment: (+)-Arabinogalactan; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09040 and HMPREF1058_RS09035 are separated by 17 nucleotides HMPREF1058_RS09035 and HMPREF1058_RS09030 are separated by 228 nucleotides HMPREF1058_RS09030 and HMPREF1058_RS09025 are separated by 73 nucleotides
HMPREF1058_RS09040: HMPREF1058_RS09040 - AAA family ATPase, at 958,111 to 960,339
_RS09040
HMPREF1058_RS09035: HMPREF1058_RS09035 - ATP-dependent Clp protease adaptor ClpS, at 960,357 to 960,665
_RS09035
HMPREF1058_RS09030: HMPREF1058_RS09030 - pyridoxamine 5'-phosphate oxidase family protein, at 960,894 to 961,301
_RS09030
HMPREF1058_RS09025: HMPREF1058_RS09025 - helix-turn-helix domain-containing protein, at 961,375 to 962,190
_RS09025
Position (kb) 960
961 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 959.443 kb on - strand, within HMPREF1058_RS09040 at 959.443 kb on - strand, within HMPREF1058_RS09040 at 959.494 kb on - strand, within HMPREF1058_RS09040 at 959.497 kb on + strand, within HMPREF1058_RS09040 at 959.507 kb on - strand, within HMPREF1058_RS09040 at 959.508 kb on + strand, within HMPREF1058_RS09040 at 959.512 kb on + strand, within HMPREF1058_RS09040 at 959.512 kb on + strand, within HMPREF1058_RS09040 at 959.512 kb on + strand, within HMPREF1058_RS09040 at 959.512 kb on + strand, within HMPREF1058_RS09040 at 959.513 kb on - strand, within HMPREF1058_RS09040 at 959.513 kb on - strand, within HMPREF1058_RS09040 at 959.600 kb on - strand, within HMPREF1058_RS09040 at 959.621 kb on + strand, within HMPREF1058_RS09040 at 959.837 kb on + strand, within HMPREF1058_RS09040 at 959.838 kb on - strand, within HMPREF1058_RS09040 at 959.838 kb on - strand, within HMPREF1058_RS09040 at 960.058 kb on - strand, within HMPREF1058_RS09040 at 960.059 kb on + strand, within HMPREF1058_RS09040 at 960.060 kb on - strand, within HMPREF1058_RS09040 at 960.060 kb on - strand, within HMPREF1058_RS09040 at 960.060 kb on - strand, within HMPREF1058_RS09040 at 960.065 kb on + strand, within HMPREF1058_RS09040 at 960.066 kb on - strand, within HMPREF1058_RS09040 at 960.107 kb on + strand, within HMPREF1058_RS09040 at 960.241 kb on + strand at 960.242 kb on - strand at 960.331 kb on + strand at 960.332 kb on - strand at 960.340 kb on - strand at 960.451 kb on + strand, within HMPREF1058_RS09035 at 960.455 kb on + strand, within HMPREF1058_RS09035 at 960.455 kb on + strand, within HMPREF1058_RS09035 at 960.457 kb on + strand, within HMPREF1058_RS09035 at 960.465 kb on + strand, within HMPREF1058_RS09035 at 960.552 kb on + strand, within HMPREF1058_RS09035 at 960.590 kb on + strand, within HMPREF1058_RS09035 at 960.625 kb on - strand, within HMPREF1058_RS09035 at 960.641 kb on + strand at 960.684 kb on + strand at 960.685 kb on - strand at 960.688 kb on + strand at 960.722 kb on - strand at 960.814 kb on + strand at 960.815 kb on - strand at 960.815 kb on - strand at 960.815 kb on - strand at 960.815 kb on - strand at 960.816 kb on + strand at 960.816 kb on + strand at 960.817 kb on - strand at 960.818 kb on + strand at 960.821 kb on + strand at 960.822 kb on - strand at 960.849 kb on - strand at 960.967 kb on + strand, within HMPREF1058_RS09030 at 960.967 kb on + strand, within HMPREF1058_RS09030 at 961.101 kb on + strand, within HMPREF1058_RS09030 at 961.101 kb on + strand, within HMPREF1058_RS09030 at 961.102 kb on - strand, within HMPREF1058_RS09030 at 961.102 kb on - strand, within HMPREF1058_RS09030 at 961.230 kb on - strand, within HMPREF1058_RS09030 at 961.327 kb on + strand at 961.388 kb on + strand at 961.388 kb on + strand at 961.393 kb on + strand at 961.393 kb on + strand at 961.423 kb on + strand at 961.440 kb on + strand at 961.441 kb on - strand at 961.645 kb on + strand, within HMPREF1058_RS09025 at 961.645 kb on + strand, within HMPREF1058_RS09025 at 961.645 kb on + strand, within HMPREF1058_RS09025
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan; filtered 2.5 mg/ml (C) remove 959,443 - HMPREF1058_RS09040 0.60 -0.8 959,443 - HMPREF1058_RS09040 0.60 +0.5 959,494 - HMPREF1058_RS09040 0.62 -0.1 959,497 + HMPREF1058_RS09040 0.62 -0.5 959,507 - HMPREF1058_RS09040 0.63 +0.8 959,508 + HMPREF1058_RS09040 0.63 +0.7 959,512 + HMPREF1058_RS09040 0.63 +0.2 959,512 + HMPREF1058_RS09040 0.63 +1.5 959,512 + HMPREF1058_RS09040 0.63 -1.3 959,512 + HMPREF1058_RS09040 0.63 -0.2 959,513 - HMPREF1058_RS09040 0.63 -2.3 959,513 - HMPREF1058_RS09040 0.63 -1.0 959,600 - HMPREF1058_RS09040 0.67 +0.1 959,621 + HMPREF1058_RS09040 0.68 +0.7 959,837 + HMPREF1058_RS09040 0.77 -2.0 959,838 - HMPREF1058_RS09040 0.77 +1.0 959,838 - HMPREF1058_RS09040 0.77 +0.1 960,058 - HMPREF1058_RS09040 0.87 +0.6 960,059 + HMPREF1058_RS09040 0.87 -0.2 960,060 - HMPREF1058_RS09040 0.87 +0.2 960,060 - HMPREF1058_RS09040 0.87 -0.6 960,060 - HMPREF1058_RS09040 0.87 +0.8 960,065 + HMPREF1058_RS09040 0.88 -0.1 960,066 - HMPREF1058_RS09040 0.88 +0.5 960,107 + HMPREF1058_RS09040 0.90 -2.4 960,241 + -0.3 960,242 - -0.5 960,331 + +0.8 960,332 - +0.5 960,340 - -0.8 960,451 + HMPREF1058_RS09035 0.30 -0.5 960,455 + HMPREF1058_RS09035 0.32 -0.9 960,455 + HMPREF1058_RS09035 0.32 -0.1 960,457 + HMPREF1058_RS09035 0.32 -1.0 960,465 + HMPREF1058_RS09035 0.35 -0.2 960,552 + HMPREF1058_RS09035 0.63 -1.1 960,590 + HMPREF1058_RS09035 0.75 -1.6 960,625 - HMPREF1058_RS09035 0.87 -0.3 960,641 + -1.0 960,684 + -2.9 960,685 - +1.1 960,688 + -0.5 960,722 - +0.4 960,814 + -0.5 960,815 - +1.4 960,815 - +0.5 960,815 - -0.3 960,815 - +0.1 960,816 + +0.9 960,816 + -0.1 960,817 - -0.2 960,818 + +0.6 960,821 + +1.0 960,822 - -1.2 960,849 - -0.4 960,967 + HMPREF1058_RS09030 0.18 +0.7 960,967 + HMPREF1058_RS09030 0.18 +0.2 961,101 + HMPREF1058_RS09030 0.51 -0.8 961,101 + HMPREF1058_RS09030 0.51 +0.2 961,102 - HMPREF1058_RS09030 0.51 +0.8 961,102 - HMPREF1058_RS09030 0.51 +0.6 961,230 - HMPREF1058_RS09030 0.82 +0.6 961,327 + -0.4 961,388 + -1.1 961,388 + -0.2 961,393 + +1.2 961,393 + -0.8 961,423 + -0.2 961,440 + +0.6 961,441 - +0.0 961,645 + HMPREF1058_RS09025 0.33 -0.1 961,645 + HMPREF1058_RS09025 0.33 -0.7 961,645 + HMPREF1058_RS09025 0.33 +0.3
Or see this region's nucleotide sequence