Experiment: (+)-Arabinogalactan; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06910 and HMPREF1058_RS06905 are separated by 116 nucleotides HMPREF1058_RS06905 and HMPREF1058_RS06900 are separated by 117 nucleotides HMPREF1058_RS06900 and HMPREF1058_RS06895 are separated by 75 nucleotides
HMPREF1058_RS06910: HMPREF1058_RS06910 - LL-diaminopimelate aminotransferase, at 363,063 to 364,292
_RS06910
HMPREF1058_RS06905: HMPREF1058_RS06905 - hypothetical protein, at 364,409 to 365,134
_RS06905
HMPREF1058_RS06900: HMPREF1058_RS06900 - P-II family nitrogen regulator, at 365,252 to 365,608
_RS06900
HMPREF1058_RS06895: HMPREF1058_RS06895 - ammonium transporter, at 365,684 to 367,042
_RS06895
Position (kb) 364
365
366 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 363.465 kb on + strand, within HMPREF1058_RS06910 at 363.465 kb on + strand, within HMPREF1058_RS06910 at 363.466 kb on - strand, within HMPREF1058_RS06910 at 363.466 kb on - strand, within HMPREF1058_RS06910 at 363.466 kb on - strand, within HMPREF1058_RS06910 at 363.532 kb on + strand, within HMPREF1058_RS06910 at 363.589 kb on + strand, within HMPREF1058_RS06910 at 363.598 kb on + strand, within HMPREF1058_RS06910 at 363.599 kb on - strand, within HMPREF1058_RS06910 at 363.618 kb on - strand, within HMPREF1058_RS06910 at 363.669 kb on + strand, within HMPREF1058_RS06910 at 363.669 kb on + strand, within HMPREF1058_RS06910 at 363.670 kb on - strand, within HMPREF1058_RS06910 at 363.699 kb on + strand, within HMPREF1058_RS06910 at 363.725 kb on - strand, within HMPREF1058_RS06910 at 363.725 kb on - strand, within HMPREF1058_RS06910 at 363.754 kb on - strand, within HMPREF1058_RS06910 at 363.945 kb on + strand, within HMPREF1058_RS06910 at 363.945 kb on + strand, within HMPREF1058_RS06910 at 363.946 kb on - strand, within HMPREF1058_RS06910 at 363.976 kb on - strand, within HMPREF1058_RS06910 at 364.021 kb on - strand, within HMPREF1058_RS06910 at 364.023 kb on - strand, within HMPREF1058_RS06910 at 364.126 kb on + strand, within HMPREF1058_RS06910 at 364.127 kb on - strand, within HMPREF1058_RS06910 at 364.159 kb on - strand, within HMPREF1058_RS06910 at 364.171 kb on + strand at 364.215 kb on + strand at 364.215 kb on + strand at 364.297 kb on + strand at 364.298 kb on - strand at 364.364 kb on + strand at 364.365 kb on - strand at 364.365 kb on - strand at 364.376 kb on + strand at 364.393 kb on + strand at 364.408 kb on + strand at 364.441 kb on - strand at 364.529 kb on - strand, within HMPREF1058_RS06905 at 364.564 kb on - strand, within HMPREF1058_RS06905 at 364.776 kb on + strand, within HMPREF1058_RS06905 at 364.776 kb on + strand, within HMPREF1058_RS06905 at 364.863 kb on - strand, within HMPREF1058_RS06905 at 364.872 kb on - strand, within HMPREF1058_RS06905 at 364.875 kb on + strand, within HMPREF1058_RS06905 at 364.876 kb on - strand, within HMPREF1058_RS06905 at 364.876 kb on - strand, within HMPREF1058_RS06905 at 364.956 kb on - strand, within HMPREF1058_RS06905 at 364.956 kb on - strand, within HMPREF1058_RS06905 at 364.956 kb on - strand, within HMPREF1058_RS06905 at 364.956 kb on - strand, within HMPREF1058_RS06905 at 365.188 kb on + strand at 365.189 kb on - strand at 365.234 kb on + strand at 365.235 kb on - strand at 365.350 kb on - strand, within HMPREF1058_RS06900 at 365.381 kb on - strand, within HMPREF1058_RS06900 at 365.381 kb on - strand, within HMPREF1058_RS06900 at 365.399 kb on + strand, within HMPREF1058_RS06900 at 365.400 kb on - strand, within HMPREF1058_RS06900 at 365.692 kb on + strand at 365.694 kb on + strand at 365.700 kb on + strand at 365.701 kb on - strand at 365.701 kb on - strand at 365.823 kb on + strand, within HMPREF1058_RS06895 at 365.841 kb on + strand, within HMPREF1058_RS06895 at 365.842 kb on - strand, within HMPREF1058_RS06895
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan; filtered 2.5 mg/ml (C) remove 363,465 + HMPREF1058_RS06910 0.33 -1.1 363,465 + HMPREF1058_RS06910 0.33 +2.2 363,466 - HMPREF1058_RS06910 0.33 +1.0 363,466 - HMPREF1058_RS06910 0.33 -1.1 363,466 - HMPREF1058_RS06910 0.33 +0.6 363,532 + HMPREF1058_RS06910 0.38 -0.0 363,589 + HMPREF1058_RS06910 0.43 +0.1 363,598 + HMPREF1058_RS06910 0.43 +1.3 363,599 - HMPREF1058_RS06910 0.44 -2.1 363,618 - HMPREF1058_RS06910 0.45 -0.4 363,669 + HMPREF1058_RS06910 0.49 +0.3 363,669 + HMPREF1058_RS06910 0.49 +0.3 363,670 - HMPREF1058_RS06910 0.49 -1.3 363,699 + HMPREF1058_RS06910 0.52 -0.6 363,725 - HMPREF1058_RS06910 0.54 -0.2 363,725 - HMPREF1058_RS06910 0.54 -1.5 363,754 - HMPREF1058_RS06910 0.56 +1.3 363,945 + HMPREF1058_RS06910 0.72 -0.7 363,945 + HMPREF1058_RS06910 0.72 -1.5 363,946 - HMPREF1058_RS06910 0.72 -0.1 363,976 - HMPREF1058_RS06910 0.74 -0.8 364,021 - HMPREF1058_RS06910 0.78 -0.2 364,023 - HMPREF1058_RS06910 0.78 +2.2 364,126 + HMPREF1058_RS06910 0.86 -0.3 364,127 - HMPREF1058_RS06910 0.87 +0.5 364,159 - HMPREF1058_RS06910 0.89 -0.2 364,171 + +1.5 364,215 + +0.6 364,215 + -0.1 364,297 + +0.9 364,298 - +0.9 364,364 + -2.2 364,365 - -1.1 364,365 - -0.5 364,376 + -0.7 364,393 + -0.5 364,408 + -1.1 364,441 - +3.2 364,529 - HMPREF1058_RS06905 0.17 +1.0 364,564 - HMPREF1058_RS06905 0.21 +1.3 364,776 + HMPREF1058_RS06905 0.51 +0.3 364,776 + HMPREF1058_RS06905 0.51 -2.1 364,863 - HMPREF1058_RS06905 0.63 +0.5 364,872 - HMPREF1058_RS06905 0.64 +0.4 364,875 + HMPREF1058_RS06905 0.64 +0.3 364,876 - HMPREF1058_RS06905 0.64 +0.4 364,876 - HMPREF1058_RS06905 0.64 +2.0 364,956 - HMPREF1058_RS06905 0.75 -2.4 364,956 - HMPREF1058_RS06905 0.75 +1.6 364,956 - HMPREF1058_RS06905 0.75 +3.9 364,956 - HMPREF1058_RS06905 0.75 -1.7 365,188 + -1.6 365,189 - -0.3 365,234 + -0.0 365,235 - -0.5 365,350 - HMPREF1058_RS06900 0.27 -0.4 365,381 - HMPREF1058_RS06900 0.36 -0.0 365,381 - HMPREF1058_RS06900 0.36 -0.9 365,399 + HMPREF1058_RS06900 0.41 -1.5 365,400 - HMPREF1058_RS06900 0.41 -0.7 365,692 + +0.9 365,694 + -0.6 365,700 + -0.5 365,701 - +0.4 365,701 - +0.1 365,823 + HMPREF1058_RS06895 0.10 -0.5 365,841 + HMPREF1058_RS06895 0.12 +0.5 365,842 - HMPREF1058_RS06895 0.12 +0.9
Or see this region's nucleotide sequence