Experiment: (+)-Arabinogalactan; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18445 and HMPREF1058_RS0119295 overlap by 25 nucleotides HMPREF1058_RS0119295 and HMPREF1058_RS18440 are separated by 6 nucleotides
HMPREF1058_RS18445: HMPREF1058_RS18445 - polysaccharide pyruvyl transferase family protein, at 152,631 to 153,917
_RS18445
HMPREF1058_RS0119295: HMPREF1058_RS0119295 - Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain, at 153,893 to 155,173
_RS0119295
HMPREF1058_RS18440: HMPREF1058_RS18440 - hypothetical protein, at 155,180 to 156,712
_RS18440
Position (kb) 153
154
155
156 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 152.894 kb on + strand, within HMPREF1058_RS18445 at 152.895 kb on - strand, within HMPREF1058_RS18445 at 152.900 kb on + strand, within HMPREF1058_RS18445 at 152.953 kb on + strand, within HMPREF1058_RS18445 at 152.971 kb on + strand, within HMPREF1058_RS18445 at 152.985 kb on - strand, within HMPREF1058_RS18445 at 152.990 kb on - strand, within HMPREF1058_RS18445 at 153.015 kb on + strand, within HMPREF1058_RS18445 at 153.094 kb on - strand, within HMPREF1058_RS18445 at 153.192 kb on + strand, within HMPREF1058_RS18445 at 153.257 kb on - strand, within HMPREF1058_RS18445 at 153.306 kb on + strand, within HMPREF1058_RS18445 at 153.321 kb on + strand, within HMPREF1058_RS18445 at 153.324 kb on - strand, within HMPREF1058_RS18445 at 153.342 kb on - strand, within HMPREF1058_RS18445 at 153.397 kb on + strand, within HMPREF1058_RS18445 at 153.461 kb on - strand, within HMPREF1058_RS18445 at 153.467 kb on + strand, within HMPREF1058_RS18445 at 153.498 kb on - strand, within HMPREF1058_RS18445 at 153.599 kb on - strand, within HMPREF1058_RS18445 at 153.601 kb on - strand, within HMPREF1058_RS18445 at 153.608 kb on + strand, within HMPREF1058_RS18445 at 153.609 kb on - strand, within HMPREF1058_RS18445 at 153.694 kb on - strand, within HMPREF1058_RS18445 at 153.751 kb on + strand, within HMPREF1058_RS18445 at 153.751 kb on + strand, within HMPREF1058_RS18445 at 153.755 kb on + strand, within HMPREF1058_RS18445 at 153.775 kb on - strand, within HMPREF1058_RS18445 at 153.795 kb on - strand at 153.842 kb on - strand at 154.025 kb on - strand, within HMPREF1058_RS0119295 at 154.124 kb on - strand, within HMPREF1058_RS0119295 at 154.201 kb on + strand, within HMPREF1058_RS0119295 at 154.219 kb on + strand, within HMPREF1058_RS0119295 at 154.250 kb on + strand, within HMPREF1058_RS0119295 at 154.250 kb on + strand, within HMPREF1058_RS0119295 at 154.250 kb on + strand, within HMPREF1058_RS0119295 at 154.251 kb on - strand, within HMPREF1058_RS0119295 at 154.310 kb on - strand, within HMPREF1058_RS0119295 at 154.347 kb on + strand, within HMPREF1058_RS0119295 at 154.351 kb on + strand, within HMPREF1058_RS0119295 at 154.366 kb on + strand, within HMPREF1058_RS0119295 at 154.387 kb on + strand, within HMPREF1058_RS0119295 at 154.406 kb on - strand, within HMPREF1058_RS0119295 at 154.415 kb on - strand, within HMPREF1058_RS0119295 at 154.442 kb on - strand, within HMPREF1058_RS0119295 at 154.535 kb on - strand, within HMPREF1058_RS0119295 at 154.599 kb on - strand, within HMPREF1058_RS0119295 at 154.603 kb on + strand, within HMPREF1058_RS0119295 at 154.604 kb on - strand, within HMPREF1058_RS0119295 at 154.627 kb on + strand, within HMPREF1058_RS0119295 at 154.634 kb on + strand, within HMPREF1058_RS0119295 at 154.651 kb on + strand, within HMPREF1058_RS0119295 at 154.653 kb on + strand, within HMPREF1058_RS0119295 at 154.654 kb on - strand, within HMPREF1058_RS0119295 at 154.685 kb on + strand, within HMPREF1058_RS0119295 at 154.751 kb on - strand, within HMPREF1058_RS0119295 at 154.753 kb on - strand, within HMPREF1058_RS0119295 at 154.868 kb on + strand, within HMPREF1058_RS0119295 at 154.957 kb on + strand, within HMPREF1058_RS0119295 at 154.957 kb on + strand, within HMPREF1058_RS0119295 at 154.969 kb on - strand, within HMPREF1058_RS0119295 at 154.970 kb on + strand, within HMPREF1058_RS0119295 at 154.971 kb on - strand, within HMPREF1058_RS0119295 at 154.971 kb on - strand, within HMPREF1058_RS0119295 at 154.984 kb on + strand, within HMPREF1058_RS0119295 at 155.015 kb on + strand, within HMPREF1058_RS0119295 at 155.016 kb on - strand, within HMPREF1058_RS0119295 at 155.028 kb on - strand, within HMPREF1058_RS0119295 at 155.042 kb on - strand, within HMPREF1058_RS0119295 at 155.178 kb on + strand at 155.198 kb on - strand at 155.253 kb on + strand at 155.258 kb on + strand at 155.259 kb on - strand at 155.288 kb on + strand at 155.324 kb on + strand at 155.324 kb on + strand at 155.325 kb on - strand at 155.326 kb on + strand at 155.327 kb on - strand at 155.473 kb on + strand, within HMPREF1058_RS18440 at 155.517 kb on + strand, within HMPREF1058_RS18440 at 155.518 kb on - strand, within HMPREF1058_RS18440 at 155.526 kb on - strand, within HMPREF1058_RS18440 at 155.526 kb on - strand, within HMPREF1058_RS18440 at 155.526 kb on - strand, within HMPREF1058_RS18440 at 155.679 kb on + strand, within HMPREF1058_RS18440 at 155.702 kb on + strand, within HMPREF1058_RS18440 at 155.711 kb on + strand, within HMPREF1058_RS18440 at 155.711 kb on + strand, within HMPREF1058_RS18440 at 155.713 kb on + strand, within HMPREF1058_RS18440 at 155.713 kb on + strand, within HMPREF1058_RS18440 at 155.713 kb on + strand, within HMPREF1058_RS18440 at 155.713 kb on + strand, within HMPREF1058_RS18440 at 155.715 kb on + strand, within HMPREF1058_RS18440 at 155.758 kb on + strand, within HMPREF1058_RS18440 at 155.758 kb on + strand, within HMPREF1058_RS18440 at 155.758 kb on + strand, within HMPREF1058_RS18440 at 155.758 kb on + strand at 155.758 kb on + strand, within HMPREF1058_RS18440 at 155.760 kb on - strand, within HMPREF1058_RS18440 at 155.784 kb on - strand, within HMPREF1058_RS18440 at 155.802 kb on + strand, within HMPREF1058_RS18440 at 155.803 kb on - strand, within HMPREF1058_RS18440 at 155.904 kb on - strand, within HMPREF1058_RS18440 at 155.947 kb on + strand, within HMPREF1058_RS18440 at 155.954 kb on - strand, within HMPREF1058_RS18440 at 155.995 kb on + strand, within HMPREF1058_RS18440 at 155.998 kb on - strand, within HMPREF1058_RS18440 at 155.998 kb on - strand, within HMPREF1058_RS18440 at 155.998 kb on - strand, within HMPREF1058_RS18440 at 155.998 kb on - strand, within HMPREF1058_RS18440 at 156.016 kb on + strand, within HMPREF1058_RS18440 at 156.016 kb on + strand, within HMPREF1058_RS18440 at 156.017 kb on - strand, within HMPREF1058_RS18440 at 156.017 kb on - strand, within HMPREF1058_RS18440 at 156.022 kb on + strand, within HMPREF1058_RS18440 at 156.091 kb on + strand, within HMPREF1058_RS18440 at 156.092 kb on - strand, within HMPREF1058_RS18440 at 156.098 kb on + strand, within HMPREF1058_RS18440 at 156.098 kb on + strand, within HMPREF1058_RS18440 at 156.098 kb on + strand, within HMPREF1058_RS18440 at 156.110 kb on + strand, within HMPREF1058_RS18440 at 156.110 kb on + strand, within HMPREF1058_RS18440 at 156.112 kb on + strand, within HMPREF1058_RS18440 at 156.113 kb on - strand, within HMPREF1058_RS18440 at 156.146 kb on - strand, within HMPREF1058_RS18440 at 156.148 kb on + strand, within HMPREF1058_RS18440 at 156.165 kb on - strand, within HMPREF1058_RS18440 at 156.165 kb on - strand, within HMPREF1058_RS18440 at 156.166 kb on + strand, within HMPREF1058_RS18440 at 156.168 kb on + strand, within HMPREF1058_RS18440
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan; filtered 2.5 mg/ml (C) remove 152,894 + HMPREF1058_RS18445 0.20 -1.4 152,895 - HMPREF1058_RS18445 0.21 -0.5 152,900 + HMPREF1058_RS18445 0.21 +0.2 152,953 + HMPREF1058_RS18445 0.25 -0.6 152,971 + HMPREF1058_RS18445 0.26 +0.1 152,985 - HMPREF1058_RS18445 0.28 +0.4 152,990 - HMPREF1058_RS18445 0.28 -0.1 153,015 + HMPREF1058_RS18445 0.30 -0.2 153,094 - HMPREF1058_RS18445 0.36 -2.1 153,192 + HMPREF1058_RS18445 0.44 +0.0 153,257 - HMPREF1058_RS18445 0.49 -1.8 153,306 + HMPREF1058_RS18445 0.52 -1.8 153,321 + HMPREF1058_RS18445 0.54 -1.7 153,324 - HMPREF1058_RS18445 0.54 -0.2 153,342 - HMPREF1058_RS18445 0.55 +0.6 153,397 + HMPREF1058_RS18445 0.60 -0.6 153,461 - HMPREF1058_RS18445 0.64 -0.5 153,467 + HMPREF1058_RS18445 0.65 -0.7 153,498 - HMPREF1058_RS18445 0.67 +2.4 153,599 - HMPREF1058_RS18445 0.75 -0.8 153,601 - HMPREF1058_RS18445 0.75 -0.9 153,608 + HMPREF1058_RS18445 0.76 +0.3 153,609 - HMPREF1058_RS18445 0.76 -1.3 153,694 - HMPREF1058_RS18445 0.83 -0.1 153,751 + HMPREF1058_RS18445 0.87 -1.4 153,751 + HMPREF1058_RS18445 0.87 -0.4 153,755 + HMPREF1058_RS18445 0.87 -0.1 153,775 - HMPREF1058_RS18445 0.89 +4.0 153,795 - +0.3 153,842 - -0.9 154,025 - HMPREF1058_RS0119295 0.10 +0.9 154,124 - HMPREF1058_RS0119295 0.18 +0.2 154,201 + HMPREF1058_RS0119295 0.24 +0.1 154,219 + HMPREF1058_RS0119295 0.25 +0.6 154,250 + HMPREF1058_RS0119295 0.28 -1.0 154,250 + HMPREF1058_RS0119295 0.28 -0.4 154,250 + HMPREF1058_RS0119295 0.28 -1.9 154,251 - HMPREF1058_RS0119295 0.28 -0.1 154,310 - HMPREF1058_RS0119295 0.33 -2.6 154,347 + HMPREF1058_RS0119295 0.35 +1.1 154,351 + HMPREF1058_RS0119295 0.36 -0.4 154,366 + HMPREF1058_RS0119295 0.37 -1.4 154,387 + HMPREF1058_RS0119295 0.39 +0.9 154,406 - HMPREF1058_RS0119295 0.40 -1.2 154,415 - HMPREF1058_RS0119295 0.41 -0.7 154,442 - HMPREF1058_RS0119295 0.43 -1.3 154,535 - HMPREF1058_RS0119295 0.50 +0.6 154,599 - HMPREF1058_RS0119295 0.55 -0.6 154,603 + HMPREF1058_RS0119295 0.55 -0.4 154,604 - HMPREF1058_RS0119295 0.56 +0.5 154,627 + HMPREF1058_RS0119295 0.57 +0.9 154,634 + HMPREF1058_RS0119295 0.58 -1.2 154,651 + HMPREF1058_RS0119295 0.59 -0.3 154,653 + HMPREF1058_RS0119295 0.59 +0.3 154,654 - HMPREF1058_RS0119295 0.59 +2.3 154,685 + HMPREF1058_RS0119295 0.62 -0.4 154,751 - HMPREF1058_RS0119295 0.67 -1.9 154,753 - HMPREF1058_RS0119295 0.67 -0.3 154,868 + HMPREF1058_RS0119295 0.76 -0.6 154,957 + HMPREF1058_RS0119295 0.83 -0.9 154,957 + HMPREF1058_RS0119295 0.83 -0.0 154,969 - HMPREF1058_RS0119295 0.84 -0.5 154,970 + HMPREF1058_RS0119295 0.84 -1.3 154,971 - HMPREF1058_RS0119295 0.84 -0.3 154,971 - HMPREF1058_RS0119295 0.84 +0.9 154,984 + HMPREF1058_RS0119295 0.85 -0.8 155,015 + HMPREF1058_RS0119295 0.88 -2.6 155,016 - HMPREF1058_RS0119295 0.88 +0.9 155,028 - HMPREF1058_RS0119295 0.89 -0.1 155,042 - HMPREF1058_RS0119295 0.90 -1.2 155,178 + -1.5 155,198 - -1.8 155,253 + -1.4 155,258 + -0.9 155,259 - -2.0 155,288 + -0.7 155,324 + +1.1 155,324 + -2.3 155,325 - +0.1 155,326 + +1.4 155,327 - +0.9 155,473 + HMPREF1058_RS18440 0.19 +0.1 155,517 + HMPREF1058_RS18440 0.22 -0.4 155,518 - HMPREF1058_RS18440 0.22 -2.0 155,526 - HMPREF1058_RS18440 0.23 +0.9 155,526 - HMPREF1058_RS18440 0.23 +0.3 155,526 - HMPREF1058_RS18440 0.23 +0.3 155,679 + HMPREF1058_RS18440 0.33 +1.9 155,702 + HMPREF1058_RS18440 0.34 -0.1 155,711 + HMPREF1058_RS18440 0.35 -2.2 155,711 + HMPREF1058_RS18440 0.35 -2.6 155,713 + HMPREF1058_RS18440 0.35 +0.3 155,713 + HMPREF1058_RS18440 0.35 +1.9 155,713 + HMPREF1058_RS18440 0.35 +0.3 155,713 + HMPREF1058_RS18440 0.35 -0.4 155,715 + HMPREF1058_RS18440 0.35 +1.7 155,758 + HMPREF1058_RS18440 0.38 -0.9 155,758 + HMPREF1058_RS18440 0.38 -0.4 155,758 + HMPREF1058_RS18440 0.38 +0.6 155,758 + -1.4 155,758 + HMPREF1058_RS18440 0.38 -1.4 155,760 - HMPREF1058_RS18440 0.38 +0.9 155,784 - HMPREF1058_RS18440 0.39 +1.2 155,802 + HMPREF1058_RS18440 0.41 -0.6 155,803 - HMPREF1058_RS18440 0.41 +1.9 155,904 - HMPREF1058_RS18440 0.47 -1.5 155,947 + HMPREF1058_RS18440 0.50 +0.5 155,954 - HMPREF1058_RS18440 0.50 +0.1 155,995 + HMPREF1058_RS18440 0.53 -0.9 155,998 - HMPREF1058_RS18440 0.53 -2.0 155,998 - HMPREF1058_RS18440 0.53 -3.3 155,998 - HMPREF1058_RS18440 0.53 -1.4 155,998 - HMPREF1058_RS18440 0.53 +0.3 156,016 + HMPREF1058_RS18440 0.55 -0.7 156,016 + HMPREF1058_RS18440 0.55 +4.8 156,017 - HMPREF1058_RS18440 0.55 -1.6 156,017 - HMPREF1058_RS18440 0.55 +0.2 156,022 + HMPREF1058_RS18440 0.55 -0.3 156,091 + HMPREF1058_RS18440 0.59 -0.8 156,092 - HMPREF1058_RS18440 0.59 -0.8 156,098 + HMPREF1058_RS18440 0.60 -1.4 156,098 + HMPREF1058_RS18440 0.60 +1.1 156,098 + HMPREF1058_RS18440 0.60 +1.0 156,110 + HMPREF1058_RS18440 0.61 +0.9 156,110 + HMPREF1058_RS18440 0.61 -0.3 156,112 + HMPREF1058_RS18440 0.61 -0.7 156,113 - HMPREF1058_RS18440 0.61 -1.4 156,146 - HMPREF1058_RS18440 0.63 -0.9 156,148 + HMPREF1058_RS18440 0.63 +1.1 156,165 - HMPREF1058_RS18440 0.64 -0.7 156,165 - HMPREF1058_RS18440 0.64 -1.3 156,166 + HMPREF1058_RS18440 0.64 -1.1 156,168 + HMPREF1058_RS18440 0.64 +2.9
Or see this region's nucleotide sequence