Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08450

Experiment: (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	(+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)
1,137,468	+		HMPREF1058_RS08455	0.28	-0.4
1,137,469	-		HMPREF1058_RS08455	0.28	+0.3
1,137,469	-		HMPREF1058_RS08455	0.28	-1.1
1,137,471	-		HMPREF1058_RS08455	0.28	-1.4
1,137,515	+		HMPREF1058_RS08455	0.32	+0.5
1,137,586	-		HMPREF1058_RS08455	0.39	-0.6
1,137,593	+		HMPREF1058_RS08455	0.40	-2.1
1,137,593	+		HMPREF1058_RS08455	0.40	-0.7
1,137,594	-		HMPREF1058_RS08455	0.40	+0.3
1,137,609	+		HMPREF1058_RS08455	0.41	-1.0
1,137,687	+		HMPREF1058_RS08455	0.49	-0.0
1,137,688	-		HMPREF1058_RS08455	0.49	-1.0
1,137,774	-		HMPREF1058_RS08455	0.57	-0.2
1,137,774	-		HMPREF1058_RS08455	0.57	-1.3
1,137,823	+		HMPREF1058_RS08455	0.62	+2.3
1,137,836	+		HMPREF1058_RS08455	0.63	-2.9
1,137,841	-		HMPREF1058_RS08455	0.64	+0.3
1,137,841	-		HMPREF1058_RS08455	0.64	+1.7
1,137,876	-		HMPREF1058_RS08455	0.67	+3.2
1,137,876	-		HMPREF1058_RS08455	0.67	-1.2
1,137,943	-		HMPREF1058_RS08455	0.74	-0.0
1,137,945	-		HMPREF1058_RS08455	0.74	-3.1
1,137,952	-		HMPREF1058_RS08455	0.74	+0.2
1,138,057	-		HMPREF1058_RS08455	0.85	+0.2
1,138,062	+		HMPREF1058_RS08455	0.85	-0.3
1,138,063	-		HMPREF1058_RS08455	0.85	-1.5
1,138,071	-		HMPREF1058_RS08455	0.86	-0.5
1,138,071	-		HMPREF1058_RS08455	0.86	+0.2
1,138,071	-		HMPREF1058_RS08455	0.86	-1.2
1,138,071	-		HMPREF1058_RS08455	0.86	+1.5
1,138,091	+		HMPREF1058_RS08455	0.88	-0.9
1,138,091	+		HMPREF1058_RS08455	0.88	-0.7
1,138,091	+		HMPREF1058_RS08455	0.88	-1.5
1,138,092	-		HMPREF1058_RS08455	0.88	-0.4
1,138,260	+				-1.3
1,138,261	-				-0.2
1,138,282	-				-1.0
1,138,437	-				-0.8
1,138,455	-				-1.8
1,138,527	+				-2.8
1,138,528	-				-2.4
1,138,529	+				-1.6
1,138,530	-				-1.7
1,138,530	-				-0.7
1,138,535	-				-1.1
1,138,545	+				-3.7
1,138,801	+				-1.7
1,138,802	-				-1.8
1,138,802	-				-1.2
1,139,126	+		HMPREF1058_RS08450	0.17	-1.5
1,139,126	+		HMPREF1058_RS08450	0.17	-0.3
1,139,127	-		HMPREF1058_RS08450	0.17	-2.2
1,139,127	-		HMPREF1058_RS08450	0.17	-2.9
1,139,136	+		HMPREF1058_RS08450	0.17	-4.1
1,139,153	+		HMPREF1058_RS08450	0.18	-3.0
1,139,154	-		HMPREF1058_RS08450	0.18	-2.4
1,139,179	+		HMPREF1058_RS08450	0.18	-1.2
1,139,289	-		HMPREF1058_RS08450	0.21	-1.9
1,139,293	-		HMPREF1058_RS08450	0.21	-3.2
1,139,347	+		HMPREF1058_RS08450	0.23	-3.2
1,139,445	-		HMPREF1058_RS08450	0.25	-2.6
1,139,552	-		HMPREF1058_RS08450	0.28	+0.1
1,139,559	+		HMPREF1058_RS08450	0.28	-2.4
1,139,575	-		HMPREF1058_RS08450	0.28	+1.1
1,139,575	-		HMPREF1058_RS08450	0.28	-0.8
1,139,576	+		HMPREF1058_RS08450	0.28	-1.7
1,139,608	+		HMPREF1058_RS08450	0.29	-1.2
1,139,668	-		HMPREF1058_RS08450	0.31	-1.8
1,139,678	-		HMPREF1058_RS08450	0.31	-1.5
1,139,872	+		HMPREF1058_RS08450	0.36	-1.5
1,139,873	-		HMPREF1058_RS08450	0.36	-1.7
1,140,048	-		HMPREF1058_RS08450	0.40	-0.7
1,140,067	+		HMPREF1058_RS08450	0.40	+0.2
1,140,067	+		HMPREF1058_RS08450	0.40	-1.6
1,140,086	-		HMPREF1058_RS08450	0.41	-1.4
1,140,136	+		HMPREF1058_RS08450	0.42	-0.7
1,140,206	+		HMPREF1058_RS08450	0.44	-1.2
1,140,206	+		HMPREF1058_RS08450	0.44	-3.6
1,140,207	-		HMPREF1058_RS08450	0.44	-0.2
1,140,207	-				-1.5
1,140,261	-		HMPREF1058_RS08450	0.45	-1.5
1,140,289	-		HMPREF1058_RS08450	0.46	-2.3
1,140,289	-		HMPREF1058_RS08450	0.46	-0.8
1,140,290	+		HMPREF1058_RS08450	0.46	-3.5
1,140,341	-		HMPREF1058_RS08450	0.47	-2.0
1,140,363	-		HMPREF1058_RS08450	0.48	-2.6
1,140,368	-		HMPREF1058_RS08450	0.48	-1.9
1,140,434	+		HMPREF1058_RS08450	0.50	-2.2
1,140,435	-		HMPREF1058_RS08450	0.50	-2.6
1,140,435	-		HMPREF1058_RS08450	0.50	-1.7
1,140,485	-		HMPREF1058_RS08450	0.51	-2.3
1,140,582	+		HMPREF1058_RS08450	0.53	-1.1
1,140,582	+		HMPREF1058_RS08450	0.53	-2.8
1,140,583	-		HMPREF1058_RS08450	0.53	-2.4
1,140,587	-		HMPREF1058_RS08450	0.53	+1.7
1,140,603	+		HMPREF1058_RS08450	0.54	-1.3
1,140,605	+		HMPREF1058_RS08450	0.54	-0.7
1,140,667	+		HMPREF1058_RS08450	0.55	-1.4
1,140,669	+		HMPREF1058_RS08450	0.55	-1.3
1,140,670	-		HMPREF1058_RS08450	0.55	-1.7
1,140,670	-		HMPREF1058_RS08450	0.55	-1.7
1,140,670	-		HMPREF1058_RS08450	0.55	-1.6
1,140,700	+		HMPREF1058_RS08450	0.56	-0.4
1,140,701	-		HMPREF1058_RS08450	0.56	-2.0
1,140,701	-		HMPREF1058_RS08450	0.56	-0.6
1,140,701	-		HMPREF1058_RS08450	0.56	-0.3
1,140,751	-		HMPREF1058_RS08450	0.57	-3.2
1,140,780	+		HMPREF1058_RS08450	0.58	-1.7
1,140,780	+				-0.8
1,140,781	-		HMPREF1058_RS08450	0.58	-2.7
1,140,829	-		HMPREF1058_RS08450	0.59	-1.0
1,140,830	+		HMPREF1058_RS08450	0.59	-3.3
1,140,831	-		HMPREF1058_RS08450	0.59	-2.7
1,140,831	-		HMPREF1058_RS08450	0.59	-1.2
1,140,873	+		HMPREF1058_RS08450	0.60	-3.2
1,141,116	+		HMPREF1058_RS08450	0.66	-2.0
1,141,116	+		HMPREF1058_RS08450	0.66	-2.2
1,141,153	-		HMPREF1058_RS08450	0.67	-3.2
1,141,163	-		HMPREF1058_RS08450	0.68	-2.0
1,141,174	-		HMPREF1058_RS08450	0.68	-2.1
1,141,176	-		HMPREF1058_RS08450	0.68	-1.6
1,141,321	+		HMPREF1058_RS08450	0.72	-2.7
1,141,322	-		HMPREF1058_RS08450	0.72	-0.7
1,141,332	+		HMPREF1058_RS08450	0.72	-2.4
1,141,332	+		HMPREF1058_RS08450	0.72	-1.5
1,141,333	-		HMPREF1058_RS08450	0.72	-1.3
1,141,360	-		HMPREF1058_RS08450	0.72	-2.7
1,141,389	+		HMPREF1058_RS08450	0.73	-1.7
1,141,391	+		HMPREF1058_RS08450	0.73	+0.7
1,141,391	+		HMPREF1058_RS08450	0.73	-2.0
1,141,392	-		HMPREF1058_RS08450	0.73	-1.8
1,141,484	-		HMPREF1058_RS08450	0.76	-2.3
1,141,484	-		HMPREF1058_RS08450	0.76	+0.7
1,141,484	-		HMPREF1058_RS08450	0.76	+0.3
1,141,570	-		HMPREF1058_RS08450	0.78	-3.0
1,141,697	-		HMPREF1058_RS08450	0.81	-1.9
1,141,776	+		HMPREF1058_RS08450	0.83	-1.6
1,141,787	-		HMPREF1058_RS08450	0.83	-2.1
1,141,787	-		HMPREF1058_RS08450	0.83	-0.9
1,141,787	-		HMPREF1058_RS08450	0.83	-1.9
1,141,792	+		HMPREF1058_RS08450	0.83	-0.7
1,141,831	-		HMPREF1058_RS08450	0.84	+1.3
1,141,911	-		HMPREF1058_RS08450	0.86	+0.1
1,141,947	+		HMPREF1058_RS08450	0.87	-0.1
1,141,948	-		HMPREF1058_RS08450	0.87	-2.4
1,141,966	+		HMPREF1058_RS08450	0.88	-0.2
1,141,967	-		HMPREF1058_RS08450	0.88	-2.4
1,141,975	-		HMPREF1058_RS08450	0.88	-1.9
1,142,012	+		HMPREF1058_RS08450	0.89	-0.3
1,142,013	-		HMPREF1058_RS08450	0.89	-1.7
1,142,071	+				-0.3
1,142,097	+				-0.6
1,142,098	-				-2.0
1,142,099	+				+0.3
1,142,100	-				-2.9
1,142,253	+				+1.7
1,142,312	-				-2.8
1,142,312	-				-2.0
1,142,316	-				-2.3
1,142,344	+				+2.2
1,142,345	-				-1.8
1,142,361	+				+2.1
1,142,393	+				+3.0
1,142,394	-				-0.5
1,142,394	-				-2.4
1,142,424	+				+3.0
1,142,431	+				-0.9
1,142,470	-				+1.0
1,142,472	-				-0.2
1,142,489	+				+3.6
1,142,495	+				+3.1
1,142,495	+				+3.1
1,142,496	-				+0.7
1,142,500	-				-0.7
1,142,528	+				+2.3
1,142,683	-				-0.3
1,142,689	-				-0.8
1,142,721	-				-1.5
1,142,721	-				-0.3
1,142,751	+				+5.3
1,142,752	-				+0.1
1,142,763	+				+2.4
1,142,770	-				+0.4
1,142,774	-				-0.8
1,142,776	-				+0.2
1,142,845	-				-1.1
1,142,946	+				-0.1
1,142,955	+				-0.3
1,143,009	+				-2.3
1,143,066	-				-1.3
1,143,078	+				-1.2
1,143,079	-				-1.2
1,143,087	+				-0.6
1,143,088	-				-0.3
1,143,088	-				+0.7
1,143,186	+		HMPREF1058_RS08445	0.12	-1.1
1,143,286	-		HMPREF1058_RS08445	0.15	-0.7
1,143,302	+		HMPREF1058_RS08445	0.16	+0.2
1,143,340	-		HMPREF1058_RS08445	0.17	-1.2
1,143,366	-		HMPREF1058_RS08445	0.17	+1.2