Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08440

Experiment: (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	(+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)
1,145,250	-		HMPREF1058_RS08445	0.74	-1.8
1,145,308	-		HMPREF1058_RS08445	0.76	-0.2
1,145,358	+		HMPREF1058_RS08445	0.78	-2.3
1,145,359	-		HMPREF1058_RS08445	0.78	-1.3
1,145,363	-		HMPREF1058_RS08445	0.78	-2.0
1,145,363	-		HMPREF1058_RS08445	0.78	-0.3
1,145,366	-		HMPREF1058_RS08445	0.78	-4.0
1,145,371	+		HMPREF1058_RS08445	0.78	-0.8
1,145,371	+		HMPREF1058_RS08445	0.78	-1.9
1,145,439	+		HMPREF1058_RS08445	0.80	-0.5
1,145,439	+		HMPREF1058_RS08445	0.80	-1.3
1,145,442	-		HMPREF1058_RS08445	0.80	-2.3
1,145,442	-		HMPREF1058_RS08445	0.80	+0.1
1,145,449	+		HMPREF1058_RS08445	0.80	-2.6
1,145,546	-		HMPREF1058_RS08445	0.83	-1.5
1,145,548	-		HMPREF1058_RS08445	0.83	+1.7
1,145,626	-		HMPREF1058_RS08445	0.86	-1.3
1,145,651	+		HMPREF1058_RS08445	0.87	-4.7
1,145,707	+		HMPREF1058_RS08445	0.88	-1.9
1,145,707	+		HMPREF1058_RS08445	0.88	-2.6
1,145,768	+				-1.2
1,145,769	-				-0.8
1,145,772	+				-2.8
1,145,831	-				-2.3
1,145,890	+				-2.2
1,145,899	-				-0.6
1,145,921	+				-2.3
1,145,922	-				-2.4
1,145,997	+				-2.2
1,146,070	-				-2.8
1,146,147	+				-3.0
1,146,147	+				+0.7
1,146,148	-				-1.2
1,146,148	-				-0.7
1,146,187	-				-1.0
1,146,241	+				-2.8
1,146,277	-				-1.8
1,146,277	-				-0.5
1,146,360	+		HMPREF1058_RS08440	0.12	-3.0
1,146,419	+		HMPREF1058_RS08440	0.15	-2.1
1,146,420	-		HMPREF1058_RS08440	0.15	-1.1
1,146,420	-		HMPREF1058_RS08440	0.15	+0.5
1,146,462	+		HMPREF1058_RS08440	0.17	-2.2
1,146,462	+		HMPREF1058_RS08440	0.17	-1.8
1,146,463	-		HMPREF1058_RS08440	0.17	-2.0
1,146,511	-		HMPREF1058_RS08440	0.20	-1.0
1,146,516	+		HMPREF1058_RS08440	0.20	-0.7
1,146,527	+		HMPREF1058_RS08440	0.20	-1.9
1,146,527	+		HMPREF1058_RS08440	0.20	-1.3
1,146,528	-		HMPREF1058_RS08440	0.21	+0.7
1,146,531	+		HMPREF1058_RS08440	0.21	-1.8
1,146,532	-		HMPREF1058_RS08440	0.21	-1.3
1,146,537	-		HMPREF1058_RS08440	0.21	-2.1
1,146,605	-		HMPREF1058_RS08440	0.24	-1.8
1,146,618	-		HMPREF1058_RS08440	0.25	-0.6
1,146,635	+		HMPREF1058_RS08440	0.26	-1.3
1,146,642	-		HMPREF1058_RS08440	0.26	-1.3
1,146,676	+		HMPREF1058_RS08440	0.28	-3.2
1,146,679	-		HMPREF1058_RS08440	0.28	-1.7
1,146,771	+		HMPREF1058_RS08440	0.33	-1.2
1,146,772	-		HMPREF1058_RS08440	0.33	-1.5
1,146,773	+		HMPREF1058_RS08440	0.33	-1.6
1,146,773	+		HMPREF1058_RS08440	0.33	-2.9
1,146,774	-		HMPREF1058_RS08440	0.33	-2.8
1,146,774	-		HMPREF1058_RS08440	0.33	-1.3
1,146,778	-		HMPREF1058_RS08440	0.33	+0.1
1,146,824	+		HMPREF1058_RS08440	0.35	+0.7
1,146,831	-		HMPREF1058_RS08440	0.36	-0.5
1,146,857	+		HMPREF1058_RS08440	0.37	-0.7
1,146,857	+		HMPREF1058_RS08440	0.37	-3.3
1,146,957	+		HMPREF1058_RS08440	0.42	-0.7
1,146,991	-		HMPREF1058_RS08440	0.43	-1.2
1,146,991	-		HMPREF1058_RS08440	0.43	-2.5
1,146,992	+		HMPREF1058_RS08440	0.43	-1.8
1,146,993	-		HMPREF1058_RS08440	0.44	-1.9
1,147,008	+		HMPREF1058_RS08440	0.44	-0.6
1,147,037	-		HMPREF1058_RS08440	0.46	-1.8
1,147,077	+		HMPREF1058_RS08440	0.48	-2.3
1,147,078	-		HMPREF1058_RS08440	0.48	-0.6
1,147,144	+		HMPREF1058_RS08440	0.51	-2.5
1,147,166	-		HMPREF1058_RS08440	0.52	-2.0
1,147,166	-		HMPREF1058_RS08440	0.52	-0.7
1,147,206	+		HMPREF1058_RS08440	0.54	-1.2
1,147,235	-		HMPREF1058_RS08440	0.55	+0.5
1,147,256	-		HMPREF1058_RS08440	0.56	-0.4
1,147,290	+		HMPREF1058_RS08440	0.58	-1.8
1,147,301	+		HMPREF1058_RS08440	0.59	-1.2
1,147,302	-		HMPREF1058_RS08440	0.59	-0.9
1,147,302	-		HMPREF1058_RS08440	0.59	-1.6
1,147,302	-		HMPREF1058_RS08440	0.59	-2.4
1,147,329	+		HMPREF1058_RS08440	0.60	-2.2
1,147,354	+		HMPREF1058_RS08440	0.61	-0.8
1,147,378	+		HMPREF1058_RS08440	0.63	-1.8
1,147,379	-		HMPREF1058_RS08440	0.63	-0.5
1,147,379	-		HMPREF1058_RS08440	0.63	+0.2
1,147,461	+		HMPREF1058_RS08440	0.67	-4.6
1,147,490	+		HMPREF1058_RS08440	0.68	-2.9
1,147,494	+		HMPREF1058_RS08440	0.68	+0.7
1,147,495	-		HMPREF1058_RS08440	0.68	-3.2
1,147,495	-		HMPREF1058_RS08440	0.68	-1.2
1,147,495	-		HMPREF1058_RS08440	0.68	-0.8
1,147,495	-		HMPREF1058_RS08440	0.68	+0.7
1,147,522	-		HMPREF1058_RS08440	0.70	+0.7
1,147,561	-		HMPREF1058_RS08440	0.72	-0.3
1,147,576	-		HMPREF1058_RS08440	0.72	-0.8
1,147,576	-		HMPREF1058_RS08440	0.72	-2.3
1,147,582	+		HMPREF1058_RS08440	0.73	-1.2
1,147,606	+		HMPREF1058_RS08440	0.74	-0.9
1,147,610	+		HMPREF1058_RS08440	0.74	-3.3
1,147,611	-		HMPREF1058_RS08440	0.74	-0.4
1,147,611	-		HMPREF1058_RS08440	0.74	-1.8
1,147,633	+		HMPREF1058_RS08440	0.75	-2.2
1,147,634	-		HMPREF1058_RS08440	0.75	-1.9
1,147,674	-		HMPREF1058_RS08440	0.77	-1.5
1,147,708	-		HMPREF1058_RS08440	0.79	-1.3
1,147,715	+		HMPREF1058_RS08440	0.79	+0.1
1,147,715	+		HMPREF1058_RS08440	0.79	-1.6
1,147,715	+		HMPREF1058_RS08440	0.79	+0.1
1,147,846	-		HMPREF1058_RS08440	0.86	-2.6
1,147,855	-		HMPREF1058_RS08440	0.86	-1.2
1,147,903	+		HMPREF1058_RS08440	0.88	-1.6
1,147,903	+		HMPREF1058_RS08440	0.88	-2.5
1,147,903	+		HMPREF1058_RS08440	0.88	-1.2
1,147,905	+		HMPREF1058_RS08440	0.89	-1.9
1,147,912	-		HMPREF1058_RS08440	0.89	-3.0
1,147,944	+				-1.5
1,147,981	-				-1.3
1,148,026	-				-2.0
1,148,028	+				-2.2
1,148,060	-				-1.1
1,148,091	+				-2.9
1,148,135	-				-1.7
1,148,141	-				-1.9
1,148,203	+				+5.0
1,148,260	+				+1.0
1,148,324	+				+1.4
1,148,403	+				-1.2
1,148,404	-				-0.8
1,148,409	+				-0.8
1,148,416	+				+3.2
1,148,482	-				-1.7
1,148,514	+				+0.6
1,148,515	-				-2.3
1,148,516	+				+1.5
1,148,522	-				+0.3
1,148,692	+				-0.6
1,148,749	+				-2.6
1,148,768	-				-1.5
1,148,783	-				+0.5
1,148,828	+				+1.1
1,148,829	-				+0.5
1,148,831	-				-0.9
1,148,831	-				-1.9
1,148,832	+				-1.0
1,148,832	+				-0.6
1,148,837	+				-3.2
1,148,837	+				-1.3
1,148,839	+				-1.8
1,148,839	+				-3.0
1,148,840	-				-1.8
1,149,018	+		HMPREF1058_RS08435	0.15	-1.3
1,149,019	-		HMPREF1058_RS08435	0.15	-0.5
1,149,019	-		HMPREF1058_RS08435	0.15	-0.5
1,149,019	-		HMPREF1058_RS08435	0.15	-0.3
1,149,021	+		HMPREF1058_RS08435	0.16	+2.2
1,149,021	+		HMPREF1058_RS08435	0.16	-0.8
1,149,055	+		HMPREF1058_RS08435	0.17	-0.3