Experiment: (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08370 and HMPREF1058_RS08365 are separated by 53 nucleotides HMPREF1058_RS08365 and HMPREF1058_RS08360 are separated by 52 nucleotides HMPREF1058_RS08360 and HMPREF1058_RS08355 overlap by 11 nucleotides HMPREF1058_RS08355 and HMPREF1058_RS08350 are separated by 171 nucleotides
HMPREF1058_RS08370: HMPREF1058_RS08370 - DUF5110 domain-containing protein, at 1,178,676 to 1,181,135
_RS08370
HMPREF1058_RS08365: HMPREF1058_RS08365 - glycoside hydrolase family 127 protein, at 1,181,189 to 1,183,540
_RS08365
HMPREF1058_RS08360: HMPREF1058_RS08360 - type II toxin-antitoxin system RelE/ParE family toxin, at 1,183,593 to 1,183,934
_RS08360
HMPREF1058_RS08355: HMPREF1058_RS08355 - hypothetical protein, at 1,183,924 to 1,184,199
_RS08355
HMPREF1058_RS08350: HMPREF1058_RS08350 - exonuclease SbcCD subunit D C-terminal domain-containing protein, at 1,184,371 to 1,185,573
_RS08350
Position (kb) 1181
1182
1183
1184 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1180.209 kb on - strand, within HMPREF1058_RS08370 at 1180.216 kb on - strand, within HMPREF1058_RS08370 at 1180.271 kb on + strand, within HMPREF1058_RS08370 at 1180.281 kb on + strand, within HMPREF1058_RS08370 at 1180.306 kb on - strand, within HMPREF1058_RS08370 at 1180.329 kb on - strand, within HMPREF1058_RS08370 at 1180.329 kb on - strand, within HMPREF1058_RS08370 at 1180.371 kb on + strand, within HMPREF1058_RS08370 at 1180.371 kb on + strand, within HMPREF1058_RS08370 at 1180.420 kb on - strand, within HMPREF1058_RS08370 at 1180.441 kb on + strand, within HMPREF1058_RS08370 at 1180.449 kb on + strand, within HMPREF1058_RS08370 at 1180.454 kb on - strand, within HMPREF1058_RS08370 at 1180.454 kb on - strand, within HMPREF1058_RS08370 at 1180.455 kb on + strand, within HMPREF1058_RS08370 at 1180.460 kb on + strand, within HMPREF1058_RS08370 at 1180.464 kb on - strand, within HMPREF1058_RS08370 at 1180.464 kb on - strand, within HMPREF1058_RS08370 at 1180.558 kb on - strand, within HMPREF1058_RS08370 at 1180.559 kb on + strand, within HMPREF1058_RS08370 at 1180.605 kb on + strand, within HMPREF1058_RS08370 at 1180.607 kb on + strand, within HMPREF1058_RS08370 at 1180.608 kb on - strand, within HMPREF1058_RS08370 at 1180.608 kb on - strand, within HMPREF1058_RS08370 at 1180.674 kb on + strand, within HMPREF1058_RS08370 at 1180.753 kb on + strand, within HMPREF1058_RS08370 at 1180.777 kb on - strand, within HMPREF1058_RS08370 at 1180.941 kb on - strand at 1180.941 kb on - strand at 1180.964 kb on + strand at 1181.039 kb on - strand at 1181.039 kb on - strand at 1181.103 kb on + strand at 1181.164 kb on - strand at 1181.167 kb on + strand at 1181.178 kb on + strand at 1181.184 kb on - strand at 1181.247 kb on + strand at 1181.248 kb on - strand at 1181.358 kb on + strand at 1181.489 kb on + strand, within HMPREF1058_RS08365 at 1181.489 kb on + strand, within HMPREF1058_RS08365 at 1181.490 kb on - strand, within HMPREF1058_RS08365 at 1181.490 kb on - strand, within HMPREF1058_RS08365 at 1181.491 kb on + strand, within HMPREF1058_RS08365 at 1181.491 kb on + strand, within HMPREF1058_RS08365 at 1181.492 kb on - strand, within HMPREF1058_RS08365 at 1181.495 kb on + strand, within HMPREF1058_RS08365 at 1181.495 kb on + strand, within HMPREF1058_RS08365 at 1181.495 kb on + strand, within HMPREF1058_RS08365 at 1181.495 kb on + strand, within HMPREF1058_RS08365 at 1181.496 kb on - strand, within HMPREF1058_RS08365 at 1181.538 kb on - strand, within HMPREF1058_RS08365 at 1181.539 kb on + strand, within HMPREF1058_RS08365 at 1181.545 kb on - strand, within HMPREF1058_RS08365 at 1181.628 kb on + strand, within HMPREF1058_RS08365 at 1181.692 kb on + strand, within HMPREF1058_RS08365 at 1181.693 kb on - strand, within HMPREF1058_RS08365 at 1181.704 kb on - strand, within HMPREF1058_RS08365 at 1181.827 kb on + strand, within HMPREF1058_RS08365 at 1181.828 kb on - strand, within HMPREF1058_RS08365 at 1181.828 kb on - strand, within HMPREF1058_RS08365 at 1182.010 kb on - strand, within HMPREF1058_RS08365 at 1182.088 kb on - strand, within HMPREF1058_RS08365 at 1182.115 kb on + strand, within HMPREF1058_RS08365 at 1182.115 kb on + strand, within HMPREF1058_RS08365 at 1182.200 kb on + strand, within HMPREF1058_RS08365 at 1182.201 kb on - strand, within HMPREF1058_RS08365 at 1182.206 kb on - strand, within HMPREF1058_RS08365 at 1182.230 kb on + strand, within HMPREF1058_RS08365 at 1182.264 kb on - strand, within HMPREF1058_RS08365 at 1182.266 kb on + strand, within HMPREF1058_RS08365 at 1182.290 kb on - strand, within HMPREF1058_RS08365 at 1182.467 kb on + strand, within HMPREF1058_RS08365 at 1182.468 kb on - strand, within HMPREF1058_RS08365 at 1182.726 kb on + strand, within HMPREF1058_RS08365 at 1182.794 kb on + strand, within HMPREF1058_RS08365 at 1182.986 kb on - strand, within HMPREF1058_RS08365 at 1183.049 kb on + strand, within HMPREF1058_RS08365 at 1183.061 kb on + strand, within HMPREF1058_RS08365 at 1183.062 kb on - strand, within HMPREF1058_RS08365 at 1183.063 kb on + strand, within HMPREF1058_RS08365 at 1183.438 kb on - strand at 1183.447 kb on + strand at 1183.447 kb on + strand at 1183.448 kb on - strand at 1183.448 kb on - strand at 1183.510 kb on + strand at 1183.510 kb on + strand at 1183.545 kb on - strand at 1183.545 kb on - strand at 1183.551 kb on - strand at 1183.662 kb on - strand, within HMPREF1058_RS08360 at 1183.765 kb on - strand, within HMPREF1058_RS08360 at 1183.776 kb on + strand, within HMPREF1058_RS08360 at 1183.777 kb on - strand, within HMPREF1058_RS08360 at 1183.869 kb on - strand, within HMPREF1058_RS08360 at 1183.869 kb on - strand, within HMPREF1058_RS08360 at 1183.890 kb on - strand, within HMPREF1058_RS08360 at 1184.039 kb on + strand, within HMPREF1058_RS08355 at 1184.222 kb on - strand at 1184.226 kb on - strand at 1184.306 kb on - strand at 1184.495 kb on + strand, within HMPREF1058_RS08350 at 1184.495 kb on + strand, within HMPREF1058_RS08350 at 1184.496 kb on - strand, within HMPREF1058_RS08350
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) remove 1,180,209 - HMPREF1058_RS08370 0.62 -1.2 1,180,216 - HMPREF1058_RS08370 0.63 +0.7 1,180,271 + HMPREF1058_RS08370 0.65 -1.1 1,180,281 + HMPREF1058_RS08370 0.65 +0.0 1,180,306 - HMPREF1058_RS08370 0.66 +0.9 1,180,329 - HMPREF1058_RS08370 0.67 +4.7 1,180,329 - HMPREF1058_RS08370 0.67 +0.3 1,180,371 + HMPREF1058_RS08370 0.69 +1.7 1,180,371 + HMPREF1058_RS08370 0.69 -0.6 1,180,420 - HMPREF1058_RS08370 0.71 +0.9 1,180,441 + HMPREF1058_RS08370 0.72 -1.4 1,180,449 + HMPREF1058_RS08370 0.72 -2.1 1,180,454 - HMPREF1058_RS08370 0.72 -0.3 1,180,454 - HMPREF1058_RS08370 0.72 +0.9 1,180,455 + HMPREF1058_RS08370 0.72 -0.8 1,180,460 + HMPREF1058_RS08370 0.73 +0.1 1,180,464 - HMPREF1058_RS08370 0.73 -0.3 1,180,464 - HMPREF1058_RS08370 0.73 +1.4 1,180,558 - HMPREF1058_RS08370 0.77 +0.4 1,180,559 + HMPREF1058_RS08370 0.77 +0.4 1,180,605 + HMPREF1058_RS08370 0.78 -1.9 1,180,607 + HMPREF1058_RS08370 0.78 -1.1 1,180,608 - HMPREF1058_RS08370 0.79 +1.0 1,180,608 - HMPREF1058_RS08370 0.79 +1.4 1,180,674 + HMPREF1058_RS08370 0.81 -2.0 1,180,753 + HMPREF1058_RS08370 0.84 +0.8 1,180,777 - HMPREF1058_RS08370 0.85 +1.1 1,180,941 - -0.5 1,180,941 - +2.1 1,180,964 + -1.9 1,181,039 - +0.1 1,181,039 - +0.4 1,181,103 + -1.6 1,181,164 - +0.7 1,181,167 + +1.7 1,181,178 + +0.6 1,181,184 - +0.9 1,181,247 + +0.8 1,181,248 - -0.5 1,181,358 + +1.0 1,181,489 + HMPREF1058_RS08365 0.13 +1.2 1,181,489 + HMPREF1058_RS08365 0.13 +1.4 1,181,490 - HMPREF1058_RS08365 0.13 +1.4 1,181,490 - HMPREF1058_RS08365 0.13 +0.6 1,181,491 + HMPREF1058_RS08365 0.13 +1.4 1,181,491 + HMPREF1058_RS08365 0.13 +0.5 1,181,492 - HMPREF1058_RS08365 0.13 +1.9 1,181,495 + HMPREF1058_RS08365 0.13 +0.7 1,181,495 + HMPREF1058_RS08365 0.13 +0.6 1,181,495 + HMPREF1058_RS08365 0.13 +2.0 1,181,495 + HMPREF1058_RS08365 0.13 +1.5 1,181,496 - HMPREF1058_RS08365 0.13 +0.9 1,181,538 - HMPREF1058_RS08365 0.15 +1.2 1,181,539 + HMPREF1058_RS08365 0.15 +0.7 1,181,545 - HMPREF1058_RS08365 0.15 -0.2 1,181,628 + HMPREF1058_RS08365 0.19 +0.7 1,181,692 + HMPREF1058_RS08365 0.21 -0.8 1,181,693 - HMPREF1058_RS08365 0.21 +0.7 1,181,704 - HMPREF1058_RS08365 0.22 +1.0 1,181,827 + HMPREF1058_RS08365 0.27 +2.1 1,181,828 - HMPREF1058_RS08365 0.27 +0.1 1,181,828 - HMPREF1058_RS08365 0.27 +0.4 1,182,010 - HMPREF1058_RS08365 0.35 -0.3 1,182,088 - HMPREF1058_RS08365 0.38 +1.2 1,182,115 + HMPREF1058_RS08365 0.39 +1.4 1,182,115 + HMPREF1058_RS08365 0.39 +0.6 1,182,200 + HMPREF1058_RS08365 0.43 +1.2 1,182,201 - HMPREF1058_RS08365 0.43 +1.5 1,182,206 - HMPREF1058_RS08365 0.43 -0.3 1,182,230 + HMPREF1058_RS08365 0.44 +0.1 1,182,264 - HMPREF1058_RS08365 0.46 +1.1 1,182,266 + HMPREF1058_RS08365 0.46 +1.8 1,182,290 - HMPREF1058_RS08365 0.47 +0.7 1,182,467 + HMPREF1058_RS08365 0.54 -0.8 1,182,468 - HMPREF1058_RS08365 0.54 +4.0 1,182,726 + HMPREF1058_RS08365 0.65 +3.1 1,182,794 + HMPREF1058_RS08365 0.68 +2.6 1,182,986 - HMPREF1058_RS08365 0.76 +0.7 1,183,049 + HMPREF1058_RS08365 0.79 +1.2 1,183,061 + HMPREF1058_RS08365 0.80 +1.5 1,183,062 - HMPREF1058_RS08365 0.80 +1.2 1,183,063 + HMPREF1058_RS08365 0.80 +0.1 1,183,438 - +0.2 1,183,447 + +4.1 1,183,447 + -0.3 1,183,448 - +0.7 1,183,448 - +0.2 1,183,510 + -0.2 1,183,510 + +0.6 1,183,545 - +1.5 1,183,545 - +0.9 1,183,551 - -2.0 1,183,662 - HMPREF1058_RS08360 0.20 -1.9 1,183,765 - HMPREF1058_RS08360 0.50 +0.1 1,183,776 + HMPREF1058_RS08360 0.54 +0.2 1,183,777 - HMPREF1058_RS08360 0.54 +2.2 1,183,869 - HMPREF1058_RS08360 0.81 -0.9 1,183,869 - HMPREF1058_RS08360 0.81 -0.2 1,183,890 - HMPREF1058_RS08360 0.87 -0.9 1,184,039 + HMPREF1058_RS08355 0.42 -0.4 1,184,222 - -0.3 1,184,226 - -2.4 1,184,306 - -1.3 1,184,495 + HMPREF1058_RS08350 0.10 +0.1 1,184,495 + HMPREF1058_RS08350 0.10 -0.1 1,184,496 - HMPREF1058_RS08350 0.10 -0.4
Or see this region's nucleotide sequence