Experiment: (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07610 and HMPREF1058_RS07605 are separated by 87 nucleotides HMPREF1058_RS07605 and HMPREF1058_RS07600 are separated by 146 nucleotides HMPREF1058_RS07600 and HMPREF1058_RS07595 are separated by 162 nucleotides
HMPREF1058_RS07610: HMPREF1058_RS07610 - glycosyltransferase family 2 protein, at 176,283 to 177,308
_RS07610
HMPREF1058_RS07605: HMPREF1058_RS07605 - radical SAM protein, at 177,396 to 178,277
_RS07605
HMPREF1058_RS07600: HMPREF1058_RS07600 - dihydroneopterin aldolase, at 178,424 to 178,792
_RS07600
HMPREF1058_RS07595: HMPREF1058_RS07595 - membrane protein, at 178,955 to 181,927
_RS07595
Position (kb) 177
178
179 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 177.350 kb on - strand at 177.456 kb on - strand at 177.496 kb on - strand, within HMPREF1058_RS07605 at 177.496 kb on - strand, within HMPREF1058_RS07605 at 177.536 kb on + strand, within HMPREF1058_RS07605 at 177.536 kb on + strand, within HMPREF1058_RS07605 at 177.537 kb on - strand, within HMPREF1058_RS07605 at 177.667 kb on - strand, within HMPREF1058_RS07605 at 177.669 kb on - strand, within HMPREF1058_RS07605 at 177.796 kb on + strand, within HMPREF1058_RS07605 at 177.927 kb on - strand, within HMPREF1058_RS07605 at 177.928 kb on + strand, within HMPREF1058_RS07605 at 177.928 kb on + strand, within HMPREF1058_RS07605 at 177.928 kb on + strand, within HMPREF1058_RS07605 at 177.928 kb on + strand, within HMPREF1058_RS07605 at 177.928 kb on + strand, within HMPREF1058_RS07605 at 177.929 kb on - strand, within HMPREF1058_RS07605 at 177.929 kb on - strand, within HMPREF1058_RS07605 at 177.929 kb on - strand, within HMPREF1058_RS07605 at 177.929 kb on - strand, within HMPREF1058_RS07605 at 177.930 kb on + strand, within HMPREF1058_RS07605 at 177.930 kb on + strand, within HMPREF1058_RS07605 at 177.931 kb on - strand, within HMPREF1058_RS07605 at 177.931 kb on - strand, within HMPREF1058_RS07605 at 177.932 kb on + strand, within HMPREF1058_RS07605 at 177.932 kb on + strand, within HMPREF1058_RS07605 at 177.933 kb on - strand, within HMPREF1058_RS07605 at 177.986 kb on + strand, within HMPREF1058_RS07605 at 178.000 kb on + strand, within HMPREF1058_RS07605 at 178.057 kb on + strand, within HMPREF1058_RS07605 at 178.094 kb on - strand, within HMPREF1058_RS07605 at 178.177 kb on - strand, within HMPREF1058_RS07605 at 178.205 kb on - strand at 178.282 kb on + strand at 178.283 kb on - strand at 178.283 kb on - strand at 178.303 kb on + strand at 178.303 kb on + strand at 178.303 kb on + strand at 178.312 kb on + strand at 178.347 kb on + strand at 178.374 kb on + strand at 178.389 kb on - strand at 178.393 kb on - strand at 178.433 kb on - strand at 178.793 kb on - strand at 178.901 kb on + strand at 178.901 kb on + strand at 178.978 kb on - strand at 178.986 kb on + strand at 179.052 kb on - strand at 179.052 kb on - strand at 179.060 kb on - strand at 179.069 kb on - strand at 179.156 kb on - strand at 179.208 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) remove 177,350 - +3.7 177,456 - +1.3 177,496 - HMPREF1058_RS07605 0.11 +2.0 177,496 - HMPREF1058_RS07605 0.11 -0.4 177,536 + HMPREF1058_RS07605 0.16 +1.8 177,536 + HMPREF1058_RS07605 0.16 +2.1 177,537 - HMPREF1058_RS07605 0.16 +2.0 177,667 - HMPREF1058_RS07605 0.31 +1.8 177,669 - HMPREF1058_RS07605 0.31 +1.5 177,796 + HMPREF1058_RS07605 0.45 +2.6 177,927 - HMPREF1058_RS07605 0.60 -0.3 177,928 + HMPREF1058_RS07605 0.60 +2.2 177,928 + HMPREF1058_RS07605 0.60 +2.0 177,928 + HMPREF1058_RS07605 0.60 +2.3 177,928 + HMPREF1058_RS07605 0.60 -0.4 177,928 + HMPREF1058_RS07605 0.60 +2.8 177,929 - HMPREF1058_RS07605 0.60 +3.2 177,929 - HMPREF1058_RS07605 0.60 +2.4 177,929 - HMPREF1058_RS07605 0.60 +2.8 177,929 - HMPREF1058_RS07605 0.60 +3.7 177,930 + HMPREF1058_RS07605 0.61 +1.9 177,930 + HMPREF1058_RS07605 0.61 +1.1 177,931 - HMPREF1058_RS07605 0.61 -0.2 177,931 - HMPREF1058_RS07605 0.61 +2.5 177,932 + HMPREF1058_RS07605 0.61 +2.9 177,932 + HMPREF1058_RS07605 0.61 +4.4 177,933 - HMPREF1058_RS07605 0.61 +1.7 177,986 + HMPREF1058_RS07605 0.67 +1.7 178,000 + HMPREF1058_RS07605 0.68 +2.8 178,057 + HMPREF1058_RS07605 0.75 +3.1 178,094 - HMPREF1058_RS07605 0.79 +1.9 178,177 - HMPREF1058_RS07605 0.89 +2.3 178,205 - +2.9 178,282 + +5.0 178,283 - -2.1 178,283 - -1.0 178,303 + -1.2 178,303 + -0.9 178,303 + +1.7 178,312 + -1.5 178,347 + -0.8 178,374 + -0.7 178,389 - +1.2 178,393 - +0.5 178,433 - -0.8 178,793 - -0.9 178,901 + +1.7 178,901 + +1.6 178,978 - -0.3 178,986 + -1.8 179,052 - +4.8 179,052 - -0.7 179,060 - -1.0 179,069 - +0.9 179,156 - +0.6 179,208 + +2.1
Or see this region's nucleotide sequence