Experiment: (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04495 and HMPREF1058_RS04490 are separated by 86 nucleotides HMPREF1058_RS04490 and HMPREF1058_RS04485 are separated by 85 nucleotides
HMPREF1058_RS04495: HMPREF1058_RS04495 - serpin family protein, at 16,887 to 18,128
_RS04495
HMPREF1058_RS04490: HMPREF1058_RS04490 - energy transducer TonB, at 18,215 to 19,645
_RS04490
HMPREF1058_RS04485: HMPREF1058_RS04485 - hypothetical protein, at 19,731 to 20,804
_RS04485
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 17.238 kb on - strand, within HMPREF1058_RS04495 at 17.244 kb on + strand, within HMPREF1058_RS04495 at 17.244 kb on + strand, within HMPREF1058_RS04495 at 17.244 kb on + strand, within HMPREF1058_RS04495 at 17.244 kb on + strand, within HMPREF1058_RS04495 at 17.245 kb on - strand, within HMPREF1058_RS04495 at 17.247 kb on - strand, within HMPREF1058_RS04495 at 17.247 kb on - strand, within HMPREF1058_RS04495 at 17.249 kb on + strand, within HMPREF1058_RS04495 at 17.317 kb on - strand, within HMPREF1058_RS04495 at 17.535 kb on - strand, within HMPREF1058_RS04495 at 17.552 kb on + strand, within HMPREF1058_RS04495 at 17.582 kb on + strand, within HMPREF1058_RS04495 at 17.583 kb on - strand, within HMPREF1058_RS04495 at 17.583 kb on - strand, within HMPREF1058_RS04495 at 17.617 kb on - strand, within HMPREF1058_RS04495 at 17.618 kb on + strand, within HMPREF1058_RS04495 at 17.618 kb on + strand, within HMPREF1058_RS04495 at 17.619 kb on - strand, within HMPREF1058_RS04495 at 17.707 kb on - strand, within HMPREF1058_RS04495 at 17.708 kb on + strand, within HMPREF1058_RS04495 at 17.753 kb on + strand, within HMPREF1058_RS04495 at 17.753 kb on + strand, within HMPREF1058_RS04495 at 17.805 kb on - strand, within HMPREF1058_RS04495 at 18.002 kb on + strand, within HMPREF1058_RS04495 at 18.002 kb on + strand, within HMPREF1058_RS04495 at 18.003 kb on - strand, within HMPREF1058_RS04495 at 18.087 kb on - strand at 18.115 kb on - strand at 18.183 kb on + strand at 18.433 kb on + strand, within HMPREF1058_RS04490 at 18.433 kb on + strand, within HMPREF1058_RS04490 at 18.474 kb on - strand, within HMPREF1058_RS04490 at 18.474 kb on - strand, within HMPREF1058_RS04490 at 18.529 kb on + strand, within HMPREF1058_RS04490 at 18.532 kb on - strand, within HMPREF1058_RS04490 at 18.642 kb on + strand, within HMPREF1058_RS04490 at 18.660 kb on + strand, within HMPREF1058_RS04490 at 18.661 kb on - strand, within HMPREF1058_RS04490 at 18.661 kb on - strand, within HMPREF1058_RS04490 at 18.662 kb on + strand, within HMPREF1058_RS04490 at 18.662 kb on + strand, within HMPREF1058_RS04490 at 18.662 kb on + strand, within HMPREF1058_RS04490 at 18.694 kb on - strand, within HMPREF1058_RS04490 at 18.872 kb on - strand, within HMPREF1058_RS04490 at 18.889 kb on - strand, within HMPREF1058_RS04490 at 18.909 kb on + strand, within HMPREF1058_RS04490 at 18.916 kb on + strand, within HMPREF1058_RS04490 at 19.029 kb on - strand, within HMPREF1058_RS04490 at 19.096 kb on + strand, within HMPREF1058_RS04490 at 19.298 kb on + strand, within HMPREF1058_RS04490 at 19.304 kb on - strand, within HMPREF1058_RS04490 at 19.310 kb on + strand, within HMPREF1058_RS04490 at 19.311 kb on - strand, within HMPREF1058_RS04490 at 19.371 kb on + strand, within HMPREF1058_RS04490 at 19.372 kb on - strand, within HMPREF1058_RS04490 at 19.373 kb on + strand, within HMPREF1058_RS04490 at 19.373 kb on + strand, within HMPREF1058_RS04490 at 19.374 kb on - strand, within HMPREF1058_RS04490 at 19.409 kb on - strand, within HMPREF1058_RS04490 at 19.417 kb on + strand, within HMPREF1058_RS04490 at 19.497 kb on - strand, within HMPREF1058_RS04490 at 19.501 kb on - strand, within HMPREF1058_RS04490 at 19.502 kb on + strand, within HMPREF1058_RS04490 at 19.508 kb on + strand at 19.629 kb on - strand at 19.645 kb on + strand at 19.674 kb on + strand at 19.728 kb on + strand at 19.729 kb on - strand at 19.736 kb on + strand at 19.737 kb on - strand at 19.850 kb on - strand, within HMPREF1058_RS04485 at 19.861 kb on + strand, within HMPREF1058_RS04485 at 19.940 kb on - strand, within HMPREF1058_RS04485 at 19.940 kb on - strand, within HMPREF1058_RS04485 at 20.056 kb on - strand, within HMPREF1058_RS04485 at 20.138 kb on - strand, within HMPREF1058_RS04485 at 20.272 kb on - strand, within HMPREF1058_RS04485 at 20.406 kb on + strand, within HMPREF1058_RS04485 at 20.466 kb on - strand, within HMPREF1058_RS04485 at 20.488 kb on - strand, within HMPREF1058_RS04485 at 20.568 kb on + strand, within HMPREF1058_RS04485
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) remove 17,238 - HMPREF1058_RS04495 0.28 -0.6 17,244 + HMPREF1058_RS04495 0.29 +0.2 17,244 + HMPREF1058_RS04495 0.29 +0.8 17,244 + HMPREF1058_RS04495 0.29 +1.6 17,244 + HMPREF1058_RS04495 0.29 -0.2 17,245 - HMPREF1058_RS04495 0.29 -2.5 17,247 - HMPREF1058_RS04495 0.29 +1.7 17,247 - HMPREF1058_RS04495 0.29 +2.6 17,249 + HMPREF1058_RS04495 0.29 -0.3 17,317 - HMPREF1058_RS04495 0.35 +2.2 17,535 - HMPREF1058_RS04495 0.52 -0.0 17,552 + HMPREF1058_RS04495 0.54 +1.6 17,582 + HMPREF1058_RS04495 0.56 -1.2 17,583 - HMPREF1058_RS04495 0.56 -0.7 17,583 - HMPREF1058_RS04495 0.56 -1.3 17,617 - HMPREF1058_RS04495 0.59 +0.7 17,618 + HMPREF1058_RS04495 0.59 -0.0 17,618 + HMPREF1058_RS04495 0.59 -1.0 17,619 - HMPREF1058_RS04495 0.59 +1.3 17,707 - HMPREF1058_RS04495 0.66 +0.0 17,708 + HMPREF1058_RS04495 0.66 -1.4 17,753 + HMPREF1058_RS04495 0.70 -0.7 17,753 + HMPREF1058_RS04495 0.70 +0.6 17,805 - HMPREF1058_RS04495 0.74 +0.8 18,002 + HMPREF1058_RS04495 0.90 +5.0 18,002 + HMPREF1058_RS04495 0.90 -3.2 18,003 - HMPREF1058_RS04495 0.90 +0.6 18,087 - -0.6 18,115 - -1.4 18,183 + +1.8 18,433 + HMPREF1058_RS04490 0.15 +1.3 18,433 + HMPREF1058_RS04490 0.15 -0.2 18,474 - HMPREF1058_RS04490 0.18 -1.5 18,474 - HMPREF1058_RS04490 0.18 +2.0 18,529 + HMPREF1058_RS04490 0.22 +0.2 18,532 - HMPREF1058_RS04490 0.22 -0.6 18,642 + HMPREF1058_RS04490 0.30 +1.9 18,660 + HMPREF1058_RS04490 0.31 +0.6 18,661 - HMPREF1058_RS04490 0.31 +0.4 18,661 - HMPREF1058_RS04490 0.31 -1.4 18,662 + HMPREF1058_RS04490 0.31 -1.0 18,662 + HMPREF1058_RS04490 0.31 +0.1 18,662 + HMPREF1058_RS04490 0.31 -2.2 18,694 - HMPREF1058_RS04490 0.33 +0.4 18,872 - HMPREF1058_RS04490 0.46 -1.4 18,889 - HMPREF1058_RS04490 0.47 -1.0 18,909 + HMPREF1058_RS04490 0.48 -0.7 18,916 + HMPREF1058_RS04490 0.49 +0.2 19,029 - HMPREF1058_RS04490 0.57 -3.2 19,096 + HMPREF1058_RS04490 0.62 -0.4 19,298 + HMPREF1058_RS04490 0.76 +1.9 19,304 - HMPREF1058_RS04490 0.76 -0.4 19,310 + HMPREF1058_RS04490 0.77 +1.6 19,311 - HMPREF1058_RS04490 0.77 -0.8 19,371 + HMPREF1058_RS04490 0.81 -0.7 19,372 - HMPREF1058_RS04490 0.81 -0.6 19,373 + HMPREF1058_RS04490 0.81 +1.5 19,373 + HMPREF1058_RS04490 0.81 -1.7 19,374 - HMPREF1058_RS04490 0.81 -0.0 19,409 - HMPREF1058_RS04490 0.83 -1.5 19,417 + HMPREF1058_RS04490 0.84 -0.0 19,497 - HMPREF1058_RS04490 0.90 -0.2 19,501 - HMPREF1058_RS04490 0.90 -2.9 19,502 + HMPREF1058_RS04490 0.90 +2.2 19,508 + -0.8 19,629 - +0.6 19,645 + -0.9 19,674 + -0.5 19,728 + -0.5 19,729 - -2.2 19,736 + +0.4 19,737 - -1.6 19,850 - HMPREF1058_RS04485 0.11 -0.6 19,861 + HMPREF1058_RS04485 0.12 -0.2 19,940 - HMPREF1058_RS04485 0.19 +0.6 19,940 - HMPREF1058_RS04485 0.19 +2.0 20,056 - HMPREF1058_RS04485 0.30 -1.2 20,138 - HMPREF1058_RS04485 0.38 -0.3 20,272 - HMPREF1058_RS04485 0.50 -1.7 20,406 + HMPREF1058_RS04485 0.63 +1.2 20,466 - HMPREF1058_RS04485 0.68 -1.5 20,488 - HMPREF1058_RS04485 0.70 -1.6 20,568 + HMPREF1058_RS04485 0.78 -1.4
Or see this region's nucleotide sequence