Experiment: (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03405 and HMPREF1058_RS03400 overlap by 4 nucleotides HMPREF1058_RS03400 and HMPREF1058_RS03395 are separated by 7 nucleotides HMPREF1058_RS03395 and HMPREF1058_RS03390 are separated by 13 nucleotides HMPREF1058_RS03390 and HMPREF1058_RS03385 are separated by 20 nucleotides
HMPREF1058_RS03405: HMPREF1058_RS03405 - SDR family oxidoreductase, at 287,974 to 288,696
_RS03405
HMPREF1058_RS03400: HMPREF1058_RS03400 - long-chain fatty acid--CoA ligase, at 288,693 to 289,907
_RS03400
HMPREF1058_RS03395: HMPREF1058_RS03395 - acyl carrier protein, at 289,915 to 290,139
_RS03395
HMPREF1058_RS03390: HMPREF1058_RS03390 - GNAT family N-acetyltransferase, at 290,153 to 290,626
_RS03390
HMPREF1058_RS03385: HMPREF1058_RS03385 - ATP-grasp domain-containing protein, at 290,647 to 291,852
_RS03385
Position (kb) 288
289
290 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 287.816 kb on + strand at 287.928 kb on - strand at 287.930 kb on - strand at 287.931 kb on + strand at 287.946 kb on + strand at 288.012 kb on + strand at 288.018 kb on + strand at 288.018 kb on + strand at 288.174 kb on + strand, within HMPREF1058_RS03405 at 288.251 kb on + strand, within HMPREF1058_RS03405 at 288.251 kb on + strand, within HMPREF1058_RS03405 at 288.251 kb on + strand, within HMPREF1058_RS03405 at 288.252 kb on - strand, within HMPREF1058_RS03405 at 288.252 kb on - strand, within HMPREF1058_RS03405 at 288.252 kb on - strand, within HMPREF1058_RS03405 at 288.277 kb on - strand, within HMPREF1058_RS03405 at 288.277 kb on - strand, within HMPREF1058_RS03405 at 288.298 kb on - strand, within HMPREF1058_RS03405 at 288.306 kb on + strand, within HMPREF1058_RS03405 at 288.306 kb on + strand, within HMPREF1058_RS03405 at 288.333 kb on + strand, within HMPREF1058_RS03405 at 288.334 kb on - strand, within HMPREF1058_RS03405 at 288.336 kb on + strand, within HMPREF1058_RS03405 at 288.369 kb on + strand, within HMPREF1058_RS03405 at 288.594 kb on + strand, within HMPREF1058_RS03405 at 288.617 kb on - strand, within HMPREF1058_RS03405 at 288.650 kb on - strand at 288.884 kb on - strand, within HMPREF1058_RS03400 at 288.917 kb on + strand, within HMPREF1058_RS03400 at 288.951 kb on - strand, within HMPREF1058_RS03400 at 288.966 kb on + strand, within HMPREF1058_RS03400 at 288.967 kb on - strand, within HMPREF1058_RS03400 at 289.046 kb on - strand, within HMPREF1058_RS03400 at 289.100 kb on + strand, within HMPREF1058_RS03400 at 289.197 kb on - strand, within HMPREF1058_RS03400 at 289.204 kb on + strand, within HMPREF1058_RS03400 at 289.209 kb on - strand, within HMPREF1058_RS03400 at 289.233 kb on + strand, within HMPREF1058_RS03400 at 289.242 kb on + strand, within HMPREF1058_RS03400 at 289.243 kb on - strand, within HMPREF1058_RS03400 at 289.324 kb on - strand, within HMPREF1058_RS03400 at 289.326 kb on + strand, within HMPREF1058_RS03400 at 289.327 kb on - strand, within HMPREF1058_RS03400 at 289.372 kb on + strand, within HMPREF1058_RS03400 at 289.373 kb on - strand, within HMPREF1058_RS03400 at 289.495 kb on + strand, within HMPREF1058_RS03400 at 289.495 kb on + strand, within HMPREF1058_RS03400 at 289.517 kb on - strand, within HMPREF1058_RS03400 at 289.559 kb on + strand, within HMPREF1058_RS03400 at 289.599 kb on - strand, within HMPREF1058_RS03400 at 289.761 kb on - strand, within HMPREF1058_RS03400 at 289.822 kb on - strand at 289.831 kb on + strand at 289.831 kb on + strand at 289.832 kb on - strand at 289.832 kb on - strand at 289.841 kb on + strand at 289.841 kb on + strand at 289.842 kb on - strand at 289.845 kb on + strand at 289.855 kb on - strand at 289.868 kb on - strand at 289.872 kb on - strand at 289.872 kb on - strand at 289.872 kb on - strand at 289.872 kb on - strand at 289.872 kb on - strand at 289.902 kb on - strand at 290.073 kb on + strand, within HMPREF1058_RS03395 at 290.113 kb on - strand, within HMPREF1058_RS03395 at 290.126 kb on - strand at 290.219 kb on + strand, within HMPREF1058_RS03390 at 290.252 kb on + strand, within HMPREF1058_RS03390 at 290.252 kb on + strand, within HMPREF1058_RS03390 at 290.253 kb on - strand, within HMPREF1058_RS03390 at 290.311 kb on - strand, within HMPREF1058_RS03390 at 290.335 kb on + strand, within HMPREF1058_RS03390 at 290.335 kb on + strand, within HMPREF1058_RS03390 at 290.354 kb on - strand, within HMPREF1058_RS03390 at 290.354 kb on - strand, within HMPREF1058_RS03390 at 290.354 kb on - strand, within HMPREF1058_RS03390 at 290.440 kb on + strand, within HMPREF1058_RS03390 at 290.502 kb on + strand, within HMPREF1058_RS03390 at 290.503 kb on - strand, within HMPREF1058_RS03390 at 290.508 kb on - strand, within HMPREF1058_RS03390 at 290.525 kb on - strand, within HMPREF1058_RS03390 at 290.611 kb on + strand at 290.612 kb on - strand at 290.612 kb on - strand at 290.612 kb on - strand at 290.613 kb on + strand at 290.615 kb on + strand at 290.618 kb on + strand at 290.746 kb on - strand at 290.803 kb on + strand, within HMPREF1058_RS03385 at 290.811 kb on - strand, within HMPREF1058_RS03385 at 290.827 kb on - strand, within HMPREF1058_RS03385 at 290.835 kb on - strand, within HMPREF1058_RS03385 at 290.897 kb on + strand, within HMPREF1058_RS03385 at 290.897 kb on + strand, within HMPREF1058_RS03385 at 290.898 kb on - strand, within HMPREF1058_RS03385 at 290.898 kb on - strand, within HMPREF1058_RS03385
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) remove 287,816 + -0.6 287,928 - -1.2 287,930 - -0.6 287,931 + -1.2 287,946 + +0.6 288,012 + +1.1 288,018 + -0.4 288,018 + -0.5 288,174 + HMPREF1058_RS03405 0.28 -0.2 288,251 + HMPREF1058_RS03405 0.38 -0.4 288,251 + HMPREF1058_RS03405 0.38 -1.0 288,251 + HMPREF1058_RS03405 0.38 -1.2 288,252 - HMPREF1058_RS03405 0.38 -1.6 288,252 - HMPREF1058_RS03405 0.38 -0.9 288,252 - HMPREF1058_RS03405 0.38 -1.0 288,277 - HMPREF1058_RS03405 0.42 +0.0 288,277 - HMPREF1058_RS03405 0.42 -1.0 288,298 - HMPREF1058_RS03405 0.45 +1.2 288,306 + HMPREF1058_RS03405 0.46 -1.3 288,306 + HMPREF1058_RS03405 0.46 +0.2 288,333 + HMPREF1058_RS03405 0.50 +1.9 288,334 - HMPREF1058_RS03405 0.50 +0.2 288,336 + HMPREF1058_RS03405 0.50 -2.3 288,369 + HMPREF1058_RS03405 0.55 -0.9 288,594 + HMPREF1058_RS03405 0.86 -2.1 288,617 - HMPREF1058_RS03405 0.89 +0.5 288,650 - -1.2 288,884 - HMPREF1058_RS03400 0.16 -3.0 288,917 + HMPREF1058_RS03400 0.18 +1.0 288,951 - HMPREF1058_RS03400 0.21 +1.7 288,966 + HMPREF1058_RS03400 0.22 +0.7 288,967 - HMPREF1058_RS03400 0.23 -0.3 289,046 - HMPREF1058_RS03400 0.29 -0.0 289,100 + HMPREF1058_RS03400 0.33 -1.3 289,197 - HMPREF1058_RS03400 0.41 -1.7 289,204 + HMPREF1058_RS03400 0.42 +1.7 289,209 - HMPREF1058_RS03400 0.42 +1.3 289,233 + HMPREF1058_RS03400 0.44 +0.4 289,242 + HMPREF1058_RS03400 0.45 +0.6 289,243 - HMPREF1058_RS03400 0.45 -1.7 289,324 - HMPREF1058_RS03400 0.52 -0.4 289,326 + HMPREF1058_RS03400 0.52 +1.4 289,327 - HMPREF1058_RS03400 0.52 +0.1 289,372 + HMPREF1058_RS03400 0.56 -1.7 289,373 - HMPREF1058_RS03400 0.56 -2.5 289,495 + HMPREF1058_RS03400 0.66 +2.2 289,495 + HMPREF1058_RS03400 0.66 +5.3 289,517 - HMPREF1058_RS03400 0.68 -1.5 289,559 + HMPREF1058_RS03400 0.71 +0.3 289,599 - HMPREF1058_RS03400 0.75 +2.4 289,761 - HMPREF1058_RS03400 0.88 +0.1 289,822 - -0.2 289,831 + -0.2 289,831 + +0.2 289,832 - +1.6 289,832 - +0.8 289,841 + -1.4 289,841 + +0.2 289,842 - -0.8 289,845 + +0.8 289,855 - -1.1 289,868 - -0.8 289,872 - +1.6 289,872 - -0.2 289,872 - -1.5 289,872 - -1.6 289,872 - +2.7 289,902 - +0.0 290,073 + HMPREF1058_RS03395 0.70 +1.8 290,113 - HMPREF1058_RS03395 0.88 -1.2 290,126 - -0.5 290,219 + HMPREF1058_RS03390 0.14 +0.7 290,252 + HMPREF1058_RS03390 0.21 -0.2 290,252 + HMPREF1058_RS03390 0.21 -1.6 290,253 - HMPREF1058_RS03390 0.21 -1.5 290,311 - HMPREF1058_RS03390 0.33 -0.3 290,335 + HMPREF1058_RS03390 0.38 -0.0 290,335 + HMPREF1058_RS03390 0.38 -1.0 290,354 - HMPREF1058_RS03390 0.42 -0.8 290,354 - HMPREF1058_RS03390 0.42 +0.2 290,354 - HMPREF1058_RS03390 0.42 +0.0 290,440 + HMPREF1058_RS03390 0.61 +1.1 290,502 + HMPREF1058_RS03390 0.74 -2.2 290,503 - HMPREF1058_RS03390 0.74 -0.9 290,508 - HMPREF1058_RS03390 0.75 -2.2 290,525 - HMPREF1058_RS03390 0.78 -0.4 290,611 + +1.2 290,612 - +0.2 290,612 - -0.0 290,612 - -1.5 290,613 + +1.1 290,615 + +2.2 290,618 + +1.9 290,746 - +1.7 290,803 + HMPREF1058_RS03385 0.13 -1.0 290,811 - HMPREF1058_RS03385 0.14 +0.7 290,827 - HMPREF1058_RS03385 0.15 -0.2 290,835 - HMPREF1058_RS03385 0.16 -1.5 290,897 + HMPREF1058_RS03385 0.21 -0.8 290,897 + HMPREF1058_RS03385 0.21 -1.9 290,898 - HMPREF1058_RS03385 0.21 -0.4 290,898 - HMPREF1058_RS03385 0.21 +0.2
Or see this region's nucleotide sequence