Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01860 and HMPREF1058_RS01855 are separated by 18 nucleotides HMPREF1058_RS01855 and HMPREF1058_RS01850 overlap by 20 nucleotides HMPREF1058_RS01850 and HMPREF1058_RS21710 are separated by 16 nucleotides
HMPREF1058_RS01860: HMPREF1058_RS01860 - hypothetical protein, at 29,156 to 30,184
_RS01860
HMPREF1058_RS01855: HMPREF1058_RS01855 - hypothetical protein, at 30,203 to 30,496
_RS01855
HMPREF1058_RS01850: HMPREF1058_RS01850 - hypothetical protein, at 30,477 to 30,896
_RS01850
HMPREF1058_RS21710: HMPREF1058_RS21710 - hypothetical protein, at 30,913 to 31,190
_RS21710
Position (kb) 30
31
32 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 29.918 kb on - strand, within HMPREF1058_RS01860 at 29.976 kb on - strand, within HMPREF1058_RS01860 at 30.035 kb on - strand, within HMPREF1058_RS01860 at 30.048 kb on + strand, within HMPREF1058_RS01860 at 30.055 kb on - strand, within HMPREF1058_RS01860 at 30.095 kb on + strand at 30.284 kb on + strand, within HMPREF1058_RS01855 at 30.285 kb on - strand at 30.300 kb on - strand, within HMPREF1058_RS01855 at 30.309 kb on + strand, within HMPREF1058_RS01855 at 30.452 kb on + strand, within HMPREF1058_RS01855 at 30.453 kb on - strand, within HMPREF1058_RS01855 at 30.488 kb on - strand at 30.490 kb on - strand at 30.494 kb on + strand at 30.494 kb on + strand at 30.495 kb on - strand at 30.540 kb on - strand, within HMPREF1058_RS01850 at 30.566 kb on - strand, within HMPREF1058_RS01850 at 30.617 kb on + strand, within HMPREF1058_RS01850 at 30.617 kb on + strand, within HMPREF1058_RS01850 at 30.666 kb on - strand, within HMPREF1058_RS01850 at 30.666 kb on - strand, within HMPREF1058_RS01850 at 30.733 kb on - strand, within HMPREF1058_RS01850 at 30.733 kb on - strand at 30.733 kb on - strand, within HMPREF1058_RS01850 at 30.742 kb on - strand, within HMPREF1058_RS01850 at 30.795 kb on + strand, within HMPREF1058_RS01850 at 30.797 kb on + strand, within HMPREF1058_RS01850 at 30.849 kb on + strand, within HMPREF1058_RS01850 at 30.885 kb on + strand at 30.885 kb on + strand at 30.928 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) remove 29,918 - HMPREF1058_RS01860 0.74 +0.1 29,976 - HMPREF1058_RS01860 0.80 -1.1 30,035 - HMPREF1058_RS01860 0.85 +0.7 30,048 + HMPREF1058_RS01860 0.87 -3.0 30,055 - HMPREF1058_RS01860 0.87 +0.8 30,095 + +0.5 30,284 + HMPREF1058_RS01855 0.28 -2.6 30,285 - -1.1 30,300 - HMPREF1058_RS01855 0.33 -1.1 30,309 + HMPREF1058_RS01855 0.36 +0.1 30,452 + HMPREF1058_RS01855 0.85 -3.1 30,453 - HMPREF1058_RS01855 0.85 +0.1 30,488 - +1.2 30,490 - +0.1 30,494 + +0.1 30,494 + -0.2 30,495 - +1.0 30,540 - HMPREF1058_RS01850 0.15 -0.5 30,566 - HMPREF1058_RS01850 0.21 +0.9 30,617 + HMPREF1058_RS01850 0.33 -0.2 30,617 + HMPREF1058_RS01850 0.33 -0.4 30,666 - HMPREF1058_RS01850 0.45 -0.7 30,666 - HMPREF1058_RS01850 0.45 +1.6 30,733 - HMPREF1058_RS01850 0.61 -1.2 30,733 - +0.1 30,733 - HMPREF1058_RS01850 0.61 +0.1 30,742 - HMPREF1058_RS01850 0.63 +0.4 30,795 + HMPREF1058_RS01850 0.76 +1.3 30,797 + HMPREF1058_RS01850 0.76 -0.2 30,849 + HMPREF1058_RS01850 0.89 -2.1 30,885 + +0.1 30,885 + +0.6 30,928 - -2.3
Or see this region's nucleotide sequence