Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS21420 and HMPREF1058_RS16190 are separated by 36 nucleotides HMPREF1058_RS16190 and HMPREF1058_RS16185 are separated by 426 nucleotides HMPREF1058_RS16185 and HMPREF1058_RS16180 are separated by 63 nucleotides HMPREF1058_RS16180 and HMPREF1058_RS16175 are separated by 7 nucleotides
HMPREF1058_RS21420: HMPREF1058_RS21420 - smalltalk protein, at 735,427 to 735,549
_RS21420
HMPREF1058_RS16190: HMPREF1058_RS16190 - N-acetylmuramoyl-L-alanine amidase, at 735,586 to 736,104
_RS16190
HMPREF1058_RS16185: HMPREF1058_RS16185 - undecaprenyl-phosphate glucose phosphotransferase, at 736,531 to 737,952
_RS16185
HMPREF1058_RS16180: HMPREF1058_RS16180 - YjbH domain-containing protein, at 738,016 to 738,822
_RS16180
HMPREF1058_RS16175: HMPREF1058_RS16175 - WecB/TagA/CpsF family glycosyltransferase, at 738,830 to 739,570
_RS16175
Position (kb) 736
737
738 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 735.741 kb on + strand, within HMPREF1058_RS16190 at 735.769 kb on - strand, within HMPREF1058_RS16190 at 735.805 kb on + strand, within HMPREF1058_RS16190 at 735.805 kb on + strand, within HMPREF1058_RS16190 at 735.970 kb on - strand, within HMPREF1058_RS16190 at 736.026 kb on + strand, within HMPREF1058_RS16190 at 736.026 kb on + strand, within HMPREF1058_RS16190 at 736.164 kb on + strand at 736.165 kb on - strand at 736.186 kb on + strand at 736.189 kb on + strand at 736.233 kb on - strand at 736.233 kb on - strand at 736.235 kb on - strand at 736.235 kb on - strand at 736.239 kb on - strand at 736.266 kb on + strand at 736.296 kb on - strand at 736.296 kb on - strand at 736.321 kb on - strand at 736.321 kb on - strand at 736.400 kb on + strand at 736.417 kb on - strand at 736.446 kb on + strand at 736.447 kb on - strand at 736.447 kb on - strand at 736.484 kb on + strand at 736.514 kb on - strand at 736.533 kb on - strand at 736.735 kb on - strand, within HMPREF1058_RS16185 at 736.736 kb on + strand, within HMPREF1058_RS16185 at 736.736 kb on + strand, within HMPREF1058_RS16185 at 736.737 kb on - strand, within HMPREF1058_RS16185 at 736.737 kb on - strand, within HMPREF1058_RS16185 at 736.801 kb on - strand, within HMPREF1058_RS16185 at 736.847 kb on - strand, within HMPREF1058_RS16185 at 736.847 kb on - strand, within HMPREF1058_RS16185 at 736.848 kb on + strand, within HMPREF1058_RS16185 at 736.959 kb on - strand, within HMPREF1058_RS16185 at 736.959 kb on - strand, within HMPREF1058_RS16185 at 737.067 kb on + strand, within HMPREF1058_RS16185 at 737.089 kb on + strand, within HMPREF1058_RS16185 at 737.089 kb on + strand, within HMPREF1058_RS16185 at 737.090 kb on - strand, within HMPREF1058_RS16185 at 737.093 kb on - strand, within HMPREF1058_RS16185 at 737.134 kb on + strand, within HMPREF1058_RS16185 at 737.190 kb on + strand, within HMPREF1058_RS16185 at 737.191 kb on - strand, within HMPREF1058_RS16185 at 737.191 kb on - strand, within HMPREF1058_RS16185 at 737.237 kb on - strand, within HMPREF1058_RS16185 at 737.312 kb on + strand, within HMPREF1058_RS16185 at 737.317 kb on + strand, within HMPREF1058_RS16185 at 737.321 kb on + strand, within HMPREF1058_RS16185 at 737.500 kb on + strand, within HMPREF1058_RS16185 at 737.501 kb on - strand, within HMPREF1058_RS16185 at 737.511 kb on + strand, within HMPREF1058_RS16185 at 737.620 kb on + strand, within HMPREF1058_RS16185 at 737.680 kb on - strand, within HMPREF1058_RS16185 at 737.771 kb on - strand, within HMPREF1058_RS16185 at 737.782 kb on - strand, within HMPREF1058_RS16185 at 737.867 kb on - strand at 737.925 kb on - strand at 737.953 kb on - strand at 737.955 kb on + strand at 737.956 kb on - strand at 737.981 kb on + strand at 737.982 kb on - strand at 737.983 kb on + strand at 737.998 kb on - strand at 738.144 kb on - strand, within HMPREF1058_RS16180 at 738.178 kb on - strand, within HMPREF1058_RS16180 at 738.178 kb on - strand, within HMPREF1058_RS16180 at 738.223 kb on + strand, within HMPREF1058_RS16180 at 738.224 kb on - strand, within HMPREF1058_RS16180 at 738.224 kb on - strand, within HMPREF1058_RS16180 at 738.224 kb on - strand at 738.263 kb on + strand, within HMPREF1058_RS16180 at 738.267 kb on + strand, within HMPREF1058_RS16180 at 738.267 kb on + strand, within HMPREF1058_RS16180 at 738.268 kb on - strand, within HMPREF1058_RS16180 at 738.269 kb on + strand, within HMPREF1058_RS16180 at 738.286 kb on + strand, within HMPREF1058_RS16180 at 738.351 kb on + strand, within HMPREF1058_RS16180 at 738.357 kb on + strand, within HMPREF1058_RS16180 at 738.397 kb on - strand, within HMPREF1058_RS16180 at 738.397 kb on - strand, within HMPREF1058_RS16180 at 738.539 kb on + strand, within HMPREF1058_RS16180 at 738.540 kb on - strand, within HMPREF1058_RS16180 at 738.573 kb on + strand, within HMPREF1058_RS16180 at 738.574 kb on - strand, within HMPREF1058_RS16180 at 738.574 kb on - strand, within HMPREF1058_RS16180 at 738.575 kb on + strand, within HMPREF1058_RS16180 at 738.575 kb on + strand, within HMPREF1058_RS16180 at 738.576 kb on - strand, within HMPREF1058_RS16180 at 738.610 kb on + strand, within HMPREF1058_RS16180 at 738.615 kb on - strand, within HMPREF1058_RS16180 at 738.618 kb on - strand, within HMPREF1058_RS16180 at 738.629 kb on + strand, within HMPREF1058_RS16180 at 738.629 kb on + strand, within HMPREF1058_RS16180 at 738.629 kb on + strand, within HMPREF1058_RS16180 at 738.654 kb on - strand, within HMPREF1058_RS16180 at 738.657 kb on + strand, within HMPREF1058_RS16180 at 738.733 kb on - strand, within HMPREF1058_RS16180 at 738.757 kb on + strand at 738.757 kb on + strand at 738.758 kb on - strand at 738.775 kb on + strand at 738.790 kb on + strand at 738.816 kb on + strand at 738.816 kb on + strand at 738.853 kb on - strand at 738.853 kb on - strand at 738.916 kb on - strand, within HMPREF1058_RS16175 at 738.946 kb on + strand, within HMPREF1058_RS16175 at 738.947 kb on - strand, within HMPREF1058_RS16175 at 738.947 kb on - strand, within HMPREF1058_RS16175 at 738.947 kb on - strand, within HMPREF1058_RS16175
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) remove 735,741 + HMPREF1058_RS16190 0.30 -0.8 735,769 - HMPREF1058_RS16190 0.35 +0.5 735,805 + HMPREF1058_RS16190 0.42 -2.2 735,805 + HMPREF1058_RS16190 0.42 +0.6 735,970 - HMPREF1058_RS16190 0.74 +2.4 736,026 + HMPREF1058_RS16190 0.85 +0.3 736,026 + HMPREF1058_RS16190 0.85 -2.9 736,164 + -0.8 736,165 - +0.5 736,186 + -3.2 736,189 + +2.7 736,233 - -1.3 736,233 - +1.0 736,235 - -1.1 736,235 - +1.0 736,239 - -1.4 736,266 + -1.1 736,296 - -1.4 736,296 - -0.0 736,321 - -2.9 736,321 - -2.9 736,400 + -0.5 736,417 - -0.3 736,446 + +0.2 736,447 - -0.8 736,447 - +1.7 736,484 + +0.1 736,514 - -2.2 736,533 - +6.1 736,735 - HMPREF1058_RS16185 0.14 +3.2 736,736 + HMPREF1058_RS16185 0.14 +0.5 736,736 + HMPREF1058_RS16185 0.14 -2.8 736,737 - HMPREF1058_RS16185 0.14 +3.7 736,737 - HMPREF1058_RS16185 0.14 +4.1 736,801 - HMPREF1058_RS16185 0.19 +3.9 736,847 - HMPREF1058_RS16185 0.22 +3.1 736,847 - HMPREF1058_RS16185 0.22 +3.2 736,848 + HMPREF1058_RS16185 0.22 -1.9 736,959 - HMPREF1058_RS16185 0.30 +3.5 736,959 - HMPREF1058_RS16185 0.30 +3.6 737,067 + HMPREF1058_RS16185 0.38 -1.1 737,089 + HMPREF1058_RS16185 0.39 -1.4 737,089 + HMPREF1058_RS16185 0.39 +0.6 737,090 - HMPREF1058_RS16185 0.39 +3.4 737,093 - HMPREF1058_RS16185 0.40 +3.9 737,134 + HMPREF1058_RS16185 0.42 +3.8 737,190 + HMPREF1058_RS16185 0.46 +0.5 737,191 - HMPREF1058_RS16185 0.46 +1.6 737,191 - HMPREF1058_RS16185 0.46 +2.9 737,237 - HMPREF1058_RS16185 0.50 +3.8 737,312 + HMPREF1058_RS16185 0.55 +0.9 737,317 + HMPREF1058_RS16185 0.55 +0.2 737,321 + HMPREF1058_RS16185 0.56 -3.2 737,500 + HMPREF1058_RS16185 0.68 -0.0 737,501 - HMPREF1058_RS16185 0.68 -0.1 737,511 + HMPREF1058_RS16185 0.69 -0.5 737,620 + HMPREF1058_RS16185 0.77 -0.8 737,680 - HMPREF1058_RS16185 0.81 +3.5 737,771 - HMPREF1058_RS16185 0.87 +2.5 737,782 - HMPREF1058_RS16185 0.88 +2.5 737,867 - -0.9 737,925 - -0.6 737,953 - +4.5 737,955 + -0.5 737,956 - +3.1 737,981 + -1.7 737,982 - +2.7 737,983 + -1.2 737,998 - +2.3 738,144 - HMPREF1058_RS16180 0.16 +1.1 738,178 - HMPREF1058_RS16180 0.20 +3.3 738,178 - HMPREF1058_RS16180 0.20 +2.4 738,223 + HMPREF1058_RS16180 0.26 -1.7 738,224 - HMPREF1058_RS16180 0.26 +3.9 738,224 - HMPREF1058_RS16180 0.26 +4.0 738,224 - +1.9 738,263 + HMPREF1058_RS16180 0.31 -0.7 738,267 + HMPREF1058_RS16180 0.31 +0.6 738,267 + HMPREF1058_RS16180 0.31 -2.0 738,268 - HMPREF1058_RS16180 0.31 -0.9 738,269 + HMPREF1058_RS16180 0.31 +2.2 738,286 + HMPREF1058_RS16180 0.33 -1.6 738,351 + HMPREF1058_RS16180 0.42 +1.9 738,357 + HMPREF1058_RS16180 0.42 +0.3 738,397 - HMPREF1058_RS16180 0.47 +3.5 738,397 - HMPREF1058_RS16180 0.47 +3.9 738,539 + HMPREF1058_RS16180 0.65 -0.3 738,540 - HMPREF1058_RS16180 0.65 +3.1 738,573 + HMPREF1058_RS16180 0.69 +0.2 738,574 - HMPREF1058_RS16180 0.69 +1.3 738,574 - HMPREF1058_RS16180 0.69 +4.0 738,575 + HMPREF1058_RS16180 0.69 +0.8 738,575 + HMPREF1058_RS16180 0.69 -0.4 738,576 - HMPREF1058_RS16180 0.69 +5.7 738,610 + HMPREF1058_RS16180 0.74 +0.9 738,615 - HMPREF1058_RS16180 0.74 +3.4 738,618 - HMPREF1058_RS16180 0.75 +2.3 738,629 + HMPREF1058_RS16180 0.76 -0.1 738,629 + HMPREF1058_RS16180 0.76 +1.5 738,629 + HMPREF1058_RS16180 0.76 +0.4 738,654 - HMPREF1058_RS16180 0.79 +1.5 738,657 + HMPREF1058_RS16180 0.79 -0.4 738,733 - HMPREF1058_RS16180 0.89 +1.6 738,757 + -1.7 738,757 + +0.4 738,758 - +0.2 738,775 + +1.0 738,790 + +0.9 738,816 + -1.1 738,816 + +0.1 738,853 - +3.9 738,853 - +2.5 738,916 - HMPREF1058_RS16175 0.12 +1.2 738,946 + HMPREF1058_RS16175 0.16 -2.4 738,947 - HMPREF1058_RS16175 0.16 +3.5 738,947 - HMPREF1058_RS16175 0.16 +3.3 738,947 - HMPREF1058_RS16175 0.16 +4.1
Or see this region's nucleotide sequence