Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16185 and HMPREF1058_RS16180 are separated by 63 nucleotides HMPREF1058_RS16180 and HMPREF1058_RS16175 are separated by 7 nucleotides HMPREF1058_RS16175 and HMPREF1058_RS16170 are separated by 47 nucleotides
HMPREF1058_RS16185: HMPREF1058_RS16185 - undecaprenyl-phosphate glucose phosphotransferase, at 736,531 to 737,952
_RS16185
HMPREF1058_RS16180: HMPREF1058_RS16180 - YjbH domain-containing protein, at 738,016 to 738,822
_RS16180
HMPREF1058_RS16175: HMPREF1058_RS16175 - WecB/TagA/CpsF family glycosyltransferase, at 738,830 to 739,570
_RS16175
HMPREF1058_RS16170: HMPREF1058_RS16170 - glycosyltransferase, at 739,618 to 740,796
_RS16170
Position (kb) 738
739 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 737.067 kb on + strand, within HMPREF1058_RS16185 at 737.089 kb on + strand, within HMPREF1058_RS16185 at 737.089 kb on + strand, within HMPREF1058_RS16185 at 737.090 kb on - strand, within HMPREF1058_RS16185 at 737.093 kb on - strand, within HMPREF1058_RS16185 at 737.134 kb on + strand, within HMPREF1058_RS16185 at 737.190 kb on + strand, within HMPREF1058_RS16185 at 737.191 kb on - strand, within HMPREF1058_RS16185 at 737.191 kb on - strand, within HMPREF1058_RS16185 at 737.237 kb on - strand, within HMPREF1058_RS16185 at 737.312 kb on + strand, within HMPREF1058_RS16185 at 737.317 kb on + strand, within HMPREF1058_RS16185 at 737.321 kb on + strand, within HMPREF1058_RS16185 at 737.500 kb on + strand, within HMPREF1058_RS16185 at 737.501 kb on - strand, within HMPREF1058_RS16185 at 737.511 kb on + strand, within HMPREF1058_RS16185 at 737.620 kb on + strand, within HMPREF1058_RS16185 at 737.680 kb on - strand, within HMPREF1058_RS16185 at 737.771 kb on - strand, within HMPREF1058_RS16185 at 737.782 kb on - strand, within HMPREF1058_RS16185 at 737.867 kb on - strand at 737.925 kb on - strand at 737.953 kb on - strand at 737.955 kb on + strand at 737.956 kb on - strand at 737.981 kb on + strand at 737.982 kb on - strand at 737.983 kb on + strand at 737.998 kb on - strand at 738.144 kb on - strand, within HMPREF1058_RS16180 at 738.178 kb on - strand, within HMPREF1058_RS16180 at 738.178 kb on - strand, within HMPREF1058_RS16180 at 738.223 kb on + strand, within HMPREF1058_RS16180 at 738.224 kb on - strand, within HMPREF1058_RS16180 at 738.224 kb on - strand, within HMPREF1058_RS16180 at 738.224 kb on - strand at 738.263 kb on + strand, within HMPREF1058_RS16180 at 738.267 kb on + strand, within HMPREF1058_RS16180 at 738.267 kb on + strand, within HMPREF1058_RS16180 at 738.268 kb on - strand, within HMPREF1058_RS16180 at 738.269 kb on + strand, within HMPREF1058_RS16180 at 738.286 kb on + strand, within HMPREF1058_RS16180 at 738.351 kb on + strand, within HMPREF1058_RS16180 at 738.357 kb on + strand, within HMPREF1058_RS16180 at 738.397 kb on - strand, within HMPREF1058_RS16180 at 738.397 kb on - strand, within HMPREF1058_RS16180 at 738.539 kb on + strand, within HMPREF1058_RS16180 at 738.540 kb on - strand, within HMPREF1058_RS16180 at 738.573 kb on + strand, within HMPREF1058_RS16180 at 738.574 kb on - strand, within HMPREF1058_RS16180 at 738.574 kb on - strand, within HMPREF1058_RS16180 at 738.575 kb on + strand, within HMPREF1058_RS16180 at 738.575 kb on + strand, within HMPREF1058_RS16180 at 738.576 kb on - strand, within HMPREF1058_RS16180 at 738.610 kb on + strand, within HMPREF1058_RS16180 at 738.615 kb on - strand, within HMPREF1058_RS16180 at 738.618 kb on - strand, within HMPREF1058_RS16180 at 738.629 kb on + strand, within HMPREF1058_RS16180 at 738.629 kb on + strand, within HMPREF1058_RS16180 at 738.629 kb on + strand, within HMPREF1058_RS16180 at 738.654 kb on - strand, within HMPREF1058_RS16180 at 738.657 kb on + strand, within HMPREF1058_RS16180 at 738.733 kb on - strand, within HMPREF1058_RS16180 at 738.757 kb on + strand at 738.757 kb on + strand at 738.758 kb on - strand at 738.775 kb on + strand at 738.790 kb on + strand at 738.816 kb on + strand at 738.816 kb on + strand at 738.853 kb on - strand at 738.853 kb on - strand at 738.916 kb on - strand, within HMPREF1058_RS16175 at 738.946 kb on + strand, within HMPREF1058_RS16175 at 738.947 kb on - strand, within HMPREF1058_RS16175 at 738.947 kb on - strand, within HMPREF1058_RS16175 at 738.947 kb on - strand, within HMPREF1058_RS16175 at 738.970 kb on + strand, within HMPREF1058_RS16175 at 738.991 kb on - strand, within HMPREF1058_RS16175 at 739.006 kb on + strand, within HMPREF1058_RS16175 at 739.067 kb on - strand, within HMPREF1058_RS16175 at 739.113 kb on - strand, within HMPREF1058_RS16175 at 739.132 kb on + strand, within HMPREF1058_RS16175 at 739.132 kb on + strand, within HMPREF1058_RS16175 at 739.142 kb on - strand, within HMPREF1058_RS16175 at 739.144 kb on + strand, within HMPREF1058_RS16175 at 739.185 kb on + strand, within HMPREF1058_RS16175 at 739.232 kb on - strand, within HMPREF1058_RS16175 at 739.281 kb on + strand, within HMPREF1058_RS16175 at 739.282 kb on - strand, within HMPREF1058_RS16175 at 739.373 kb on + strand, within HMPREF1058_RS16175 at 739.373 kb on + strand, within HMPREF1058_RS16175 at 739.373 kb on + strand, within HMPREF1058_RS16175 at 739.376 kb on + strand, within HMPREF1058_RS16175 at 739.501 kb on + strand at 739.546 kb on + strand at 739.546 kb on + strand at 739.547 kb on - strand at 739.571 kb on - strand at 739.595 kb on - strand at 739.595 kb on - strand at 739.621 kb on + strand at 739.621 kb on + strand at 739.633 kb on + strand at 739.656 kb on - strand at 739.678 kb on - strand at 739.742 kb on - strand, within HMPREF1058_RS16170 at 739.765 kb on + strand, within HMPREF1058_RS16170 at 739.813 kb on + strand, within HMPREF1058_RS16170
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) remove 737,067 + HMPREF1058_RS16185 0.38 -1.1 737,089 + HMPREF1058_RS16185 0.39 -1.4 737,089 + HMPREF1058_RS16185 0.39 +0.6 737,090 - HMPREF1058_RS16185 0.39 +3.4 737,093 - HMPREF1058_RS16185 0.40 +3.9 737,134 + HMPREF1058_RS16185 0.42 +3.8 737,190 + HMPREF1058_RS16185 0.46 +0.5 737,191 - HMPREF1058_RS16185 0.46 +1.6 737,191 - HMPREF1058_RS16185 0.46 +2.9 737,237 - HMPREF1058_RS16185 0.50 +3.8 737,312 + HMPREF1058_RS16185 0.55 +0.9 737,317 + HMPREF1058_RS16185 0.55 +0.2 737,321 + HMPREF1058_RS16185 0.56 -3.2 737,500 + HMPREF1058_RS16185 0.68 -0.0 737,501 - HMPREF1058_RS16185 0.68 -0.1 737,511 + HMPREF1058_RS16185 0.69 -0.5 737,620 + HMPREF1058_RS16185 0.77 -0.8 737,680 - HMPREF1058_RS16185 0.81 +3.5 737,771 - HMPREF1058_RS16185 0.87 +2.5 737,782 - HMPREF1058_RS16185 0.88 +2.5 737,867 - -0.9 737,925 - -0.6 737,953 - +4.5 737,955 + -0.5 737,956 - +3.1 737,981 + -1.7 737,982 - +2.7 737,983 + -1.2 737,998 - +2.3 738,144 - HMPREF1058_RS16180 0.16 +1.1 738,178 - HMPREF1058_RS16180 0.20 +3.3 738,178 - HMPREF1058_RS16180 0.20 +2.4 738,223 + HMPREF1058_RS16180 0.26 -1.7 738,224 - HMPREF1058_RS16180 0.26 +3.9 738,224 - HMPREF1058_RS16180 0.26 +4.0 738,224 - +1.9 738,263 + HMPREF1058_RS16180 0.31 -0.7 738,267 + HMPREF1058_RS16180 0.31 +0.6 738,267 + HMPREF1058_RS16180 0.31 -2.0 738,268 - HMPREF1058_RS16180 0.31 -0.9 738,269 + HMPREF1058_RS16180 0.31 +2.2 738,286 + HMPREF1058_RS16180 0.33 -1.6 738,351 + HMPREF1058_RS16180 0.42 +1.9 738,357 + HMPREF1058_RS16180 0.42 +0.3 738,397 - HMPREF1058_RS16180 0.47 +3.5 738,397 - HMPREF1058_RS16180 0.47 +3.9 738,539 + HMPREF1058_RS16180 0.65 -0.3 738,540 - HMPREF1058_RS16180 0.65 +3.1 738,573 + HMPREF1058_RS16180 0.69 +0.2 738,574 - HMPREF1058_RS16180 0.69 +1.3 738,574 - HMPREF1058_RS16180 0.69 +4.0 738,575 + HMPREF1058_RS16180 0.69 +0.8 738,575 + HMPREF1058_RS16180 0.69 -0.4 738,576 - HMPREF1058_RS16180 0.69 +5.7 738,610 + HMPREF1058_RS16180 0.74 +0.9 738,615 - HMPREF1058_RS16180 0.74 +3.4 738,618 - HMPREF1058_RS16180 0.75 +2.3 738,629 + HMPREF1058_RS16180 0.76 -0.1 738,629 + HMPREF1058_RS16180 0.76 +1.5 738,629 + HMPREF1058_RS16180 0.76 +0.4 738,654 - HMPREF1058_RS16180 0.79 +1.5 738,657 + HMPREF1058_RS16180 0.79 -0.4 738,733 - HMPREF1058_RS16180 0.89 +1.6 738,757 + -1.7 738,757 + +0.4 738,758 - +0.2 738,775 + +1.0 738,790 + +0.9 738,816 + -1.1 738,816 + +0.1 738,853 - +3.9 738,853 - +2.5 738,916 - HMPREF1058_RS16175 0.12 +1.2 738,946 + HMPREF1058_RS16175 0.16 -2.4 738,947 - HMPREF1058_RS16175 0.16 +3.5 738,947 - HMPREF1058_RS16175 0.16 +3.3 738,947 - HMPREF1058_RS16175 0.16 +4.1 738,970 + HMPREF1058_RS16175 0.19 -1.4 738,991 - HMPREF1058_RS16175 0.22 +2.3 739,006 + HMPREF1058_RS16175 0.24 -0.1 739,067 - HMPREF1058_RS16175 0.32 -1.3 739,113 - HMPREF1058_RS16175 0.38 +0.2 739,132 + HMPREF1058_RS16175 0.41 -2.1 739,132 + HMPREF1058_RS16175 0.41 +0.3 739,142 - HMPREF1058_RS16175 0.42 +0.2 739,144 + HMPREF1058_RS16175 0.42 -0.4 739,185 + HMPREF1058_RS16175 0.48 -2.8 739,232 - HMPREF1058_RS16175 0.54 -0.9 739,281 + HMPREF1058_RS16175 0.61 +1.7 739,282 - HMPREF1058_RS16175 0.61 +2.3 739,373 + HMPREF1058_RS16175 0.73 -0.7 739,373 + HMPREF1058_RS16175 0.73 -0.9 739,373 + HMPREF1058_RS16175 0.73 +0.9 739,376 + HMPREF1058_RS16175 0.74 +1.5 739,501 + -3.8 739,546 + -0.5 739,546 + -0.1 739,547 - -1.2 739,571 - +1.3 739,595 - +1.9 739,595 - +1.8 739,621 + -0.7 739,621 + +1.5 739,633 + -3.0 739,656 - +2.5 739,678 - +4.3 739,742 - HMPREF1058_RS16170 0.11 -2.5 739,765 + HMPREF1058_RS16170 0.12 -1.3 739,813 + HMPREF1058_RS16170 0.17 -0.4
Or see this region's nucleotide sequence