Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14145

Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
1,275,781	+				-0.6
1,275,783	+				+1.4
1,275,783	+				-0.0
1,275,783	+				-0.8
1,275,784	-				-1.3
1,275,805	-				-1.0
1,275,805	-				-3.3
1,275,806	+				+0.0
1,275,806	+				-0.7
1,275,828	+				+0.4
1,275,828	+				+0.1
1,275,828	+				-4.2
1,275,928	-				-1.2
1,275,928	-				+0.2
1,275,949	-				+1.7
1,276,004	-				-3.2
1,276,189	-				-1.7
1,276,423	+				-0.7
1,276,448	-				-2.1
1,276,448	-				-1.5
1,276,668	-				+0.0
1,276,668	-				+1.2
1,276,698	-				+0.4
1,276,713	+				+1.3
1,276,715	+				+0.5
1,276,715	+				+0.2
1,276,716	-				-3.8
1,276,716	-				-2.4
1,276,717	+				-0.5
1,276,732	+				-0.5
1,276,735	-				-0.4
1,276,735	-				+0.3
1,276,756	+				+1.6
1,276,766	-				-0.3
1,276,782	+				-1.4
1,276,783	-				+0.6
1,276,993	+		HMPREF1058_RS14145	0.49	-1.4
1,277,089	+		HMPREF1058_RS14145	0.69	-1.5
1,277,089	+		HMPREF1058_RS14145	0.69	-0.7
1,277,090	-		HMPREF1058_RS14145	0.69	-2.2
1,277,092	-		HMPREF1058_RS14145	0.70	+2.2
1,277,110	+		HMPREF1058_RS14145	0.74	+0.2
1,277,110	+		HMPREF1058_RS14145	0.74	-3.4
1,277,114	+		HMPREF1058_RS14145	0.74	-2.5
1,277,115	-		HMPREF1058_RS14145	0.75	+1.0
1,277,228	+				+0.0
1,277,235	-				+0.9
1,277,296	+				-0.1
1,277,513	-		HMPREF1058_RS14140	0.15	+0.8
1,277,513	-		HMPREF1058_RS14140	0.15	-0.4
1,277,587	-		HMPREF1058_RS14140	0.20	+1.8
1,277,628	-		HMPREF1058_RS14140	0.23	+0.2
1,277,628	-		HMPREF1058_RS14140	0.23	+2.8
1,277,697	+				-0.2
1,277,698	-		HMPREF1058_RS14140	0.28	-1.8
1,277,698	-		HMPREF1058_RS14140	0.28	-1.3
1,277,747	+		HMPREF1058_RS14140	0.31	-2.3
1,277,748	-		HMPREF1058_RS14140	0.31	+0.3
1,277,782	+		HMPREF1058_RS14140	0.33	+2.0
1,277,783	-		HMPREF1058_RS14140	0.33	+0.9
1,277,783	-		HMPREF1058_RS14140	0.33	-0.9
1,277,877	+		HMPREF1058_RS14140	0.40	-1.4
1,278,179	+		HMPREF1058_RS14140	0.61	-0.3
1,278,180	-		HMPREF1058_RS14140	0.61	+0.2
1,278,227	-		HMPREF1058_RS14140	0.64	-1.0
1,278,227	-		HMPREF1058_RS14140	0.64	+0.3