Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13090

Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
1,594,134	-		HMPREF1058_RS13100	0.60	+0.2
1,594,137	+		HMPREF1058_RS13100	0.60	-2.0
1,594,142	-		HMPREF1058_RS13100	0.60	+0.2
1,594,169	+		HMPREF1058_RS13100	0.62	+1.5
1,594,169	+		HMPREF1058_RS13100	0.62	+1.0
1,594,169	+		HMPREF1058_RS13100	0.62	+0.7
1,594,197	-		HMPREF1058_RS13100	0.64	+0.9
1,594,198	+		HMPREF1058_RS13100	0.64	+0.2
1,594,198	+		HMPREF1058_RS13100	0.64	+1.1
1,594,199	-		HMPREF1058_RS13100	0.64	-1.5
1,594,261	-		HMPREF1058_RS13100	0.68	-0.1
1,594,273	-		HMPREF1058_RS13100	0.69	+0.5
1,594,275	+		HMPREF1058_RS13100	0.69	+2.6
1,594,294	+		HMPREF1058_RS13100	0.71	+3.9
1,594,294	+		HMPREF1058_RS13100	0.71	-0.5
1,594,298	+		HMPREF1058_RS13100	0.71	-0.5
1,594,383	-		HMPREF1058_RS13100	0.77	-0.2
1,594,431	-		HMPREF1058_RS13100	0.80	+0.9
1,594,458	+		HMPREF1058_RS13100	0.82	+2.5
1,594,459	-		HMPREF1058_RS13100	0.82	+0.6
1,594,459	-		HMPREF1058_RS13100	0.82	+0.2
1,594,478	+		HMPREF1058_RS13100	0.83	+0.4
1,594,478	+		HMPREF1058_RS13100	0.83	-0.2
1,594,514	+		HMPREF1058_RS13100	0.86	-3.2
1,594,519	-		HMPREF1058_RS13100	0.86	-0.7
1,594,534	+		HMPREF1058_RS13100	0.87	-2.3
1,594,534	+		HMPREF1058_RS13100	0.87	+1.7
1,594,534	+		HMPREF1058_RS13100	0.87	+0.3
1,594,534	+		HMPREF1058_RS13100	0.87	+3.6
1,594,534	+		HMPREF1058_RS13100	0.87	-0.5
1,594,535	-		HMPREF1058_RS13100	0.87	+0.9
1,594,535	-		HMPREF1058_RS13100	0.87	-0.1
1,594,535	-		HMPREF1058_RS13100	0.87	+1.8
1,594,535	-		HMPREF1058_RS13100	0.87	-0.4
1,594,535	-		HMPREF1058_RS13100	0.87	-0.5
1,594,538	+		HMPREF1058_RS13100	0.87	-0.1
1,594,538	+		HMPREF1058_RS13100	0.87	-2.8
1,594,538	+		HMPREF1058_RS13100	0.87	+1.1
1,594,538	+		HMPREF1058_RS13100	0.87	+1.3
1,594,539	-		HMPREF1058_RS13100	0.87	-2.0
1,594,542	+		HMPREF1058_RS13100	0.88	+1.3
1,594,542	+		HMPREF1058_RS13100	0.88	+0.8
1,594,577	+				-3.8
1,594,688	+				-0.3
1,594,688	+				-3.4
1,594,693	-				-3.8
1,594,725	+				-0.4
1,594,725	+				+1.4
1,594,725	+				-1.4
1,594,735	-				+1.3
1,594,793	+				-1.3
1,594,794	-				+1.5
1,594,866	-		HMPREF1058_RS13095	0.29	-0.1
1,594,921	+		HMPREF1058_RS13095	0.43	-0.3
1,595,018	+		HMPREF1058_RS13095	0.69	+0.9
1,595,018	+		HMPREF1058_RS13095	0.69	-2.4
1,595,018	+		HMPREF1058_RS13095	0.69	+0.1
1,595,019	-		HMPREF1058_RS13095	0.69	+0.0
1,595,022	+		HMPREF1058_RS13095	0.70	-2.1
1,595,022	+		HMPREF1058_RS13095	0.70	+0.7
1,595,022	+		HMPREF1058_RS13095	0.70	+0.3
1,595,023	-		HMPREF1058_RS13095	0.70	-0.8
1,595,023	-		HMPREF1058_RS13095	0.70	-0.5
1,595,023	-		HMPREF1058_RS13095	0.70	-1.3
1,595,024	+		HMPREF1058_RS13095	0.70	-2.0
1,595,027	+		HMPREF1058_RS13095	0.71	-0.2
1,595,028	-		HMPREF1058_RS13095	0.71	-2.3
1,595,029	+		HMPREF1058_RS13095	0.72	-0.5
1,595,162	-				-3.7
1,595,162	-				+1.6
1,595,208	+		HMPREF1058_RS13090	0.14	-2.3
1,595,320	+		HMPREF1058_RS13090	0.34	-1.5
1,595,407	+		HMPREF1058_RS13090	0.50	+1.7
1,595,443	-		HMPREF1058_RS13090	0.56	+2.7
1,595,557	+		HMPREF1058_RS13090	0.77	-0.3
1,595,689	+				-0.3
1,595,710	+				-3.2
1,595,710	+				-1.4
1,595,847	-				+1.7
1,595,886	-				+0.2
1,595,937	+				-0.3
1,595,937	+				+0.3
1,595,938	-				-0.8
1,595,939	+				+0.8
1,595,941	+				-0.5
1,595,945	+				-0.6
1,595,945	+				+1.1
1,595,946	-				-2.4
1,595,948	+				+1.7
1,595,949	-				+0.1
1,595,949	-				+1.4
1,595,981	-				+0.1
1,595,982	+				-0.3
1,595,990	+				-0.2
1,595,997	+				-1.3
1,596,051	+				-1.3
1,596,051	+				-1.1
1,596,052	-				+0.5
1,596,055	+				-1.6
1,596,056	-				+0.4
1,596,128	-				+0.1
1,596,130	+				-0.4
1,596,174	-				+2.4
1,596,276	-				-0.0
1,596,325	+				-0.3
1,596,334	-				-1.1
1,596,340	+				+0.6
1,596,374	+				-3.3
1,596,381	-				+2.2
1,596,450	+		HMPREF1058_RS13085	0.40	-1.7
1,596,451	-		HMPREF1058_RS13085	0.40	-1.2
1,596,546	+		HMPREF1058_RS13085	0.84	+1.3
1,596,575	+				-1.0
1,596,636	+				-0.1
1,596,664	-				+0.5