Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS12965

Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
1,624,941	+				+0.9
1,624,955	-				-2.6
1,624,958	-				-3.2
1,624,958	-				+0.1
1,624,962	-				-0.1
1,624,973	+				-1.6
1,624,983	+				-0.2
1,625,017	+				+0.6
1,625,018	-				-0.0
1,625,031	+				-0.2
1,625,066	+				-0.0
1,625,079	+				-2.0
1,625,111	-				+0.5
1,625,653	-				+0.4
1,625,661	-				-1.3
1,625,675	-				+0.7
1,625,730	+				-1.6
1,625,785	-				-0.1
1,625,818	-				-1.6
1,625,845	+				+0.1
1,625,845	+				-1.1
1,625,845	+				-1.1
1,625,846	-				-0.7
1,625,998	+		HMPREF1058_RS12965	0.23	-0.8
1,625,999	-		HMPREF1058_RS12965	0.23	+0.2
1,626,081	+		HMPREF1058_RS12965	0.30	+0.4
1,626,115	+		HMPREF1058_RS12965	0.33	-0.5
1,626,115	+		HMPREF1058_RS12965	0.33	+1.8
1,626,117	+		HMPREF1058_RS12965	0.33	+1.8
1,626,118	-		HMPREF1058_RS12965	0.33	+1.5
1,626,118	-		HMPREF1058_RS12965	0.33	+0.2
1,626,120	-		HMPREF1058_RS12965	0.33	-0.8
1,626,120	-		HMPREF1058_RS12965	0.33	-1.0
1,626,160	+		HMPREF1058_RS12965	0.37	-1.6
1,626,172	-		HMPREF1058_RS12965	0.38	+0.7
1,626,247	-				+0.3
1,626,247	-		HMPREF1058_RS12965	0.44	-1.3
1,626,288	+		HMPREF1058_RS12965	0.48	-0.2
1,626,290	+		HMPREF1058_RS12965	0.48	+0.2
1,626,353	+		HMPREF1058_RS12965	0.53	+0.9
1,626,375	-		HMPREF1058_RS12965	0.55	+1.4
1,626,425	+		HMPREF1058_RS12965	0.59	-1.1
1,626,559	+		HMPREF1058_RS12965	0.71	-0.0
1,626,560	-		HMPREF1058_RS12965	0.71	+1.7
1,626,562	-		HMPREF1058_RS12965	0.71	+0.3
1,626,562	-		HMPREF1058_RS12965	0.71	+0.2
1,626,591	+		HMPREF1058_RS12965	0.74	-2.5
1,626,678	-		HMPREF1058_RS12965	0.81	+1.0
1,626,773	+		HMPREF1058_RS12965	0.89	+0.5
1,626,895	+				+0.6
1,626,915	+				+1.3
1,626,943	-				-3.0
1,626,943	-				+0.9
1,626,943	-				-0.6
1,626,996	+				-1.4