Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06510 and HMPREF1058_RS06505 are separated by 12 nucleotides HMPREF1058_RS06505 and HMPREF1058_RS06500 are separated by 47 nucleotides HMPREF1058_RS06500 and HMPREF1058_RS06495 are separated by 293 nucleotides
HMPREF1058_RS06510: HMPREF1058_RS06510 - ornithine cyclodeaminase, at 462,188 to 463,150
_RS06510
HMPREF1058_RS06505: HMPREF1058_RS06505 - LicD family protein, at 463,163 to 463,990
_RS06505
HMPREF1058_RS06500: HMPREF1058_RS06500 - acyltransferase, at 464,038 to 465,057
_RS06500
HMPREF1058_RS06495: HMPREF1058_RS06495 - DUF1972 domain-containing protein, at 465,351 to 466,481
_RS06495
Position (kb) 464
465
466 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 463.038 kb on + strand, within HMPREF1058_RS06510 at 463.063 kb on - strand at 463.063 kb on - strand at 463.078 kb on - strand at 463.105 kb on + strand at 463.106 kb on - strand at 463.115 kb on - strand at 463.120 kb on - strand at 463.162 kb on + strand at 463.173 kb on + strand at 463.174 kb on - strand at 463.231 kb on - strand at 463.244 kb on - strand at 463.258 kb on - strand, within HMPREF1058_RS06505 at 463.258 kb on - strand, within HMPREF1058_RS06505 at 463.279 kb on - strand, within HMPREF1058_RS06505 at 463.327 kb on + strand, within HMPREF1058_RS06505 at 463.360 kb on - strand, within HMPREF1058_RS06505 at 463.457 kb on - strand, within HMPREF1058_RS06505 at 463.469 kb on - strand, within HMPREF1058_RS06505 at 463.522 kb on + strand, within HMPREF1058_RS06505 at 463.580 kb on + strand, within HMPREF1058_RS06505 at 463.580 kb on + strand, within HMPREF1058_RS06505 at 463.580 kb on + strand, within HMPREF1058_RS06505 at 463.581 kb on - strand, within HMPREF1058_RS06505 at 463.689 kb on - strand, within HMPREF1058_RS06505 at 463.691 kb on - strand, within HMPREF1058_RS06505 at 463.698 kb on + strand, within HMPREF1058_RS06505 at 463.742 kb on - strand, within HMPREF1058_RS06505 at 463.880 kb on - strand, within HMPREF1058_RS06505 at 463.897 kb on - strand, within HMPREF1058_RS06505 at 463.910 kb on + strand at 463.910 kb on + strand at 463.911 kb on - strand at 463.919 kb on + strand at 463.919 kb on + strand at 463.919 kb on + strand at 463.920 kb on - strand at 463.920 kb on - strand at 463.920 kb on - strand at 463.950 kb on + strand at 463.964 kb on + strand at 463.964 kb on + strand at 463.973 kb on + strand at 464.006 kb on - strand at 464.010 kb on - strand at 464.010 kb on - strand at 464.015 kb on + strand at 464.043 kb on + strand at 464.043 kb on + strand at 464.044 kb on - strand at 464.044 kb on - strand at 464.116 kb on - strand at 464.136 kb on - strand at 464.142 kb on + strand, within HMPREF1058_RS06500 at 464.142 kb on + strand, within HMPREF1058_RS06500 at 464.143 kb on - strand, within HMPREF1058_RS06500 at 464.196 kb on - strand, within HMPREF1058_RS06500 at 464.247 kb on + strand, within HMPREF1058_RS06500 at 464.247 kb on + strand, within HMPREF1058_RS06500 at 464.249 kb on + strand, within HMPREF1058_RS06500 at 464.286 kb on + strand, within HMPREF1058_RS06500 at 464.319 kb on - strand, within HMPREF1058_RS06500 at 464.322 kb on + strand, within HMPREF1058_RS06500 at 464.323 kb on - strand, within HMPREF1058_RS06500 at 464.341 kb on - strand, within HMPREF1058_RS06500 at 464.401 kb on - strand, within HMPREF1058_RS06500 at 464.403 kb on + strand, within HMPREF1058_RS06500 at 464.444 kb on + strand, within HMPREF1058_RS06500 at 464.444 kb on + strand, within HMPREF1058_RS06500 at 464.455 kb on + strand, within HMPREF1058_RS06500 at 464.456 kb on - strand, within HMPREF1058_RS06500 at 464.462 kb on + strand, within HMPREF1058_RS06500 at 464.483 kb on + strand, within HMPREF1058_RS06500 at 464.520 kb on + strand, within HMPREF1058_RS06500 at 464.521 kb on - strand, within HMPREF1058_RS06500 at 464.533 kb on + strand, within HMPREF1058_RS06500 at 464.535 kb on - strand, within HMPREF1058_RS06500 at 464.601 kb on + strand, within HMPREF1058_RS06500 at 464.601 kb on + strand, within HMPREF1058_RS06500 at 464.601 kb on + strand, within HMPREF1058_RS06500 at 464.602 kb on - strand, within HMPREF1058_RS06500 at 464.602 kb on - strand, within HMPREF1058_RS06500 at 464.603 kb on + strand, within HMPREF1058_RS06500 at 464.604 kb on - strand, within HMPREF1058_RS06500 at 464.606 kb on + strand, within HMPREF1058_RS06500 at 464.606 kb on + strand, within HMPREF1058_RS06500 at 464.607 kb on - strand, within HMPREF1058_RS06500 at 464.610 kb on + strand, within HMPREF1058_RS06500 at 464.611 kb on - strand, within HMPREF1058_RS06500 at 464.631 kb on - strand, within HMPREF1058_RS06500 at 464.644 kb on + strand, within HMPREF1058_RS06500 at 464.645 kb on - strand, within HMPREF1058_RS06500 at 464.645 kb on - strand, within HMPREF1058_RS06500 at 464.652 kb on + strand, within HMPREF1058_RS06500 at 464.667 kb on + strand, within HMPREF1058_RS06500 at 464.668 kb on - strand, within HMPREF1058_RS06500 at 464.679 kb on + strand, within HMPREF1058_RS06500 at 464.681 kb on + strand, within HMPREF1058_RS06500 at 464.684 kb on + strand, within HMPREF1058_RS06500 at 464.699 kb on + strand, within HMPREF1058_RS06500 at 464.699 kb on + strand, within HMPREF1058_RS06500 at 464.739 kb on - strand, within HMPREF1058_RS06500 at 464.790 kb on + strand, within HMPREF1058_RS06500 at 464.802 kb on + strand, within HMPREF1058_RS06500 at 464.802 kb on + strand, within HMPREF1058_RS06500 at 464.807 kb on - strand, within HMPREF1058_RS06500 at 464.865 kb on + strand, within HMPREF1058_RS06500 at 464.866 kb on - strand, within HMPREF1058_RS06500 at 464.866 kb on - strand, within HMPREF1058_RS06500 at 464.866 kb on - strand at 464.867 kb on + strand, within HMPREF1058_RS06500 at 464.867 kb on + strand, within HMPREF1058_RS06500 at 464.868 kb on - strand, within HMPREF1058_RS06500 at 464.935 kb on + strand, within HMPREF1058_RS06500 at 464.936 kb on - strand, within HMPREF1058_RS06500 at 464.954 kb on + strand, within HMPREF1058_RS06500 at 464.954 kb on + strand, within HMPREF1058_RS06500 at 464.955 kb on - strand, within HMPREF1058_RS06500 at 464.980 kb on - strand at 464.980 kb on - strand at 464.994 kb on + strand at 464.994 kb on + strand at 464.997 kb on - strand at 465.030 kb on + strand at 465.063 kb on - strand at 465.085 kb on + strand at 465.288 kb on + strand at 465.289 kb on - strand at 465.366 kb on - strand at 465.420 kb on + strand at 465.421 kb on - strand at 465.421 kb on - strand at 465.424 kb on + strand at 465.431 kb on - strand at 465.436 kb on + strand at 465.466 kb on - strand, within HMPREF1058_RS06495 at 465.486 kb on + strand, within HMPREF1058_RS06495 at 465.524 kb on + strand, within HMPREF1058_RS06495 at 465.525 kb on - strand, within HMPREF1058_RS06495 at 465.525 kb on - strand, within HMPREF1058_RS06495 at 465.525 kb on - strand, within HMPREF1058_RS06495 at 465.525 kb on - strand, within HMPREF1058_RS06495 at 465.526 kb on + strand, within HMPREF1058_RS06495 at 465.526 kb on + strand, within HMPREF1058_RS06495 at 465.527 kb on - strand, within HMPREF1058_RS06495 at 465.527 kb on - strand, within HMPREF1058_RS06495 at 465.527 kb on - strand, within HMPREF1058_RS06495 at 465.528 kb on + strand, within HMPREF1058_RS06495 at 465.529 kb on - strand, within HMPREF1058_RS06495 at 465.529 kb on - strand, within HMPREF1058_RS06495 at 465.530 kb on + strand, within HMPREF1058_RS06495 at 465.627 kb on + strand, within HMPREF1058_RS06495 at 465.627 kb on + strand, within HMPREF1058_RS06495 at 465.645 kb on - strand, within HMPREF1058_RS06495 at 465.647 kb on + strand, within HMPREF1058_RS06495 at 465.647 kb on + strand, within HMPREF1058_RS06495 at 465.648 kb on - strand, within HMPREF1058_RS06495 at 465.648 kb on - strand, within HMPREF1058_RS06495 at 465.660 kb on + strand, within HMPREF1058_RS06495 at 465.660 kb on + strand, within HMPREF1058_RS06495 at 465.660 kb on + strand, within HMPREF1058_RS06495 at 465.677 kb on - strand, within HMPREF1058_RS06495 at 465.729 kb on - strand, within HMPREF1058_RS06495 at 465.729 kb on - strand, within HMPREF1058_RS06495 at 465.747 kb on - strand, within HMPREF1058_RS06495 at 465.792 kb on - strand, within HMPREF1058_RS06495 at 465.838 kb on - strand, within HMPREF1058_RS06495 at 465.853 kb on - strand, within HMPREF1058_RS06495 at 465.905 kb on + strand, within HMPREF1058_RS06495 at 465.948 kb on + strand, within HMPREF1058_RS06495 at 465.949 kb on - strand, within HMPREF1058_RS06495 at 465.951 kb on + strand, within HMPREF1058_RS06495 at 465.987 kb on - strand, within HMPREF1058_RS06495 at 465.988 kb on + strand, within HMPREF1058_RS06495 at 465.988 kb on + strand, within HMPREF1058_RS06495 at 465.992 kb on - strand, within HMPREF1058_RS06495 at 466.000 kb on + strand, within HMPREF1058_RS06495 at 466.000 kb on + strand, within HMPREF1058_RS06495
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) remove 463,038 + HMPREF1058_RS06510 0.88 +3.7 463,063 - +2.7 463,063 - +2.9 463,078 - +1.6 463,105 + -0.8 463,106 - +5.5 463,115 - +3.1 463,120 - +4.8 463,162 + -1.3 463,173 + +3.8 463,174 - +4.1 463,231 - +1.5 463,244 - -0.6 463,258 - HMPREF1058_RS06505 0.11 +3.2 463,258 - HMPREF1058_RS06505 0.11 +4.2 463,279 - HMPREF1058_RS06505 0.14 +3.3 463,327 + HMPREF1058_RS06505 0.20 +0.1 463,360 - HMPREF1058_RS06505 0.24 +3.4 463,457 - HMPREF1058_RS06505 0.36 +3.3 463,469 - HMPREF1058_RS06505 0.37 +0.9 463,522 + HMPREF1058_RS06505 0.43 +1.9 463,580 + HMPREF1058_RS06505 0.50 +4.2 463,580 + HMPREF1058_RS06505 0.50 +3.3 463,580 + HMPREF1058_RS06505 0.50 +3.3 463,581 - HMPREF1058_RS06505 0.50 +1.2 463,689 - HMPREF1058_RS06505 0.64 +1.7 463,691 - HMPREF1058_RS06505 0.64 +4.8 463,698 + HMPREF1058_RS06505 0.65 -0.4 463,742 - HMPREF1058_RS06505 0.70 +3.6 463,880 - HMPREF1058_RS06505 0.87 +2.1 463,897 - HMPREF1058_RS06505 0.89 +2.6 463,910 + +3.7 463,910 + +2.0 463,911 - +4.8 463,919 + +2.4 463,919 + -1.2 463,919 + +2.9 463,920 - +0.2 463,920 - +3.9 463,920 - +5.1 463,950 + +1.3 463,964 + +3.9 463,964 + +2.5 463,973 + +4.9 464,006 - +3.9 464,010 - +5.0 464,010 - +4.6 464,015 + -0.1 464,043 + +0.6 464,043 + +0.4 464,044 - +5.0 464,044 - +3.1 464,116 - +4.0 464,136 - +2.6 464,142 + HMPREF1058_RS06500 0.10 +1.5 464,142 + HMPREF1058_RS06500 0.10 -1.1 464,143 - HMPREF1058_RS06500 0.10 +4.0 464,196 - HMPREF1058_RS06500 0.15 +0.2 464,247 + HMPREF1058_RS06500 0.20 -0.7 464,247 + HMPREF1058_RS06500 0.20 +1.3 464,249 + HMPREF1058_RS06500 0.21 -3.2 464,286 + HMPREF1058_RS06500 0.24 -0.6 464,319 - HMPREF1058_RS06500 0.28 -2.1 464,322 + HMPREF1058_RS06500 0.28 -0.1 464,323 - HMPREF1058_RS06500 0.28 +2.7 464,341 - HMPREF1058_RS06500 0.30 +5.0 464,401 - HMPREF1058_RS06500 0.36 +4.7 464,403 + HMPREF1058_RS06500 0.36 +1.0 464,444 + HMPREF1058_RS06500 0.40 +0.2 464,444 + HMPREF1058_RS06500 0.40 -0.2 464,455 + HMPREF1058_RS06500 0.41 +0.4 464,456 - HMPREF1058_RS06500 0.41 -0.8 464,462 + HMPREF1058_RS06500 0.42 +0.1 464,483 + HMPREF1058_RS06500 0.44 -0.4 464,520 + HMPREF1058_RS06500 0.47 +0.2 464,521 - HMPREF1058_RS06500 0.47 +3.0 464,533 + HMPREF1058_RS06500 0.49 -0.1 464,535 - HMPREF1058_RS06500 0.49 +3.8 464,601 + HMPREF1058_RS06500 0.55 -2.5 464,601 + HMPREF1058_RS06500 0.55 -2.7 464,601 + HMPREF1058_RS06500 0.55 -2.4 464,602 - HMPREF1058_RS06500 0.55 +3.4 464,602 - HMPREF1058_RS06500 0.55 +5.0 464,603 + HMPREF1058_RS06500 0.55 -0.1 464,604 - HMPREF1058_RS06500 0.55 +5.2 464,606 + HMPREF1058_RS06500 0.56 +0.6 464,606 + HMPREF1058_RS06500 0.56 -1.7 464,607 - HMPREF1058_RS06500 0.56 +4.8 464,610 + HMPREF1058_RS06500 0.56 -0.6 464,611 - HMPREF1058_RS06500 0.56 +4.3 464,631 - HMPREF1058_RS06500 0.58 +6.5 464,644 + HMPREF1058_RS06500 0.59 -0.1 464,645 - HMPREF1058_RS06500 0.60 +3.8 464,645 - HMPREF1058_RS06500 0.60 +4.6 464,652 + HMPREF1058_RS06500 0.60 -0.1 464,667 + HMPREF1058_RS06500 0.62 -2.7 464,668 - HMPREF1058_RS06500 0.62 +5.1 464,679 + HMPREF1058_RS06500 0.63 -0.8 464,681 + HMPREF1058_RS06500 0.63 -0.4 464,684 + HMPREF1058_RS06500 0.63 +0.1 464,699 + HMPREF1058_RS06500 0.65 -1.8 464,699 + HMPREF1058_RS06500 0.65 +0.2 464,739 - HMPREF1058_RS06500 0.69 +3.1 464,790 + HMPREF1058_RS06500 0.74 +0.5 464,802 + HMPREF1058_RS06500 0.75 +0.4 464,802 + HMPREF1058_RS06500 0.75 +1.1 464,807 - HMPREF1058_RS06500 0.75 +4.7 464,865 + HMPREF1058_RS06500 0.81 -1.1 464,866 - HMPREF1058_RS06500 0.81 +2.8 464,866 - HMPREF1058_RS06500 0.81 +3.4 464,866 - +4.1 464,867 + HMPREF1058_RS06500 0.81 +0.4 464,867 + HMPREF1058_RS06500 0.81 -1.4 464,868 - HMPREF1058_RS06500 0.81 +2.8 464,935 + HMPREF1058_RS06500 0.88 -0.9 464,936 - HMPREF1058_RS06500 0.88 +3.9 464,954 + HMPREF1058_RS06500 0.90 -1.0 464,954 + HMPREF1058_RS06500 0.90 +1.6 464,955 - HMPREF1058_RS06500 0.90 +4.0 464,980 - -2.1 464,980 - +3.9 464,994 + -0.1 464,994 + +0.9 464,997 - +4.1 465,030 + +0.5 465,063 - +0.1 465,085 + -1.4 465,288 + +0.4 465,289 - +4.9 465,366 - +5.1 465,420 + +3.5 465,421 - +2.4 465,421 - +3.8 465,424 + -1.9 465,431 - -1.8 465,436 + +3.9 465,466 - HMPREF1058_RS06495 0.10 +3.8 465,486 + HMPREF1058_RS06495 0.12 +2.9 465,524 + HMPREF1058_RS06495 0.15 +3.4 465,525 - HMPREF1058_RS06495 0.15 +5.3 465,525 - HMPREF1058_RS06495 0.15 +3.4 465,525 - HMPREF1058_RS06495 0.15 +3.4 465,525 - HMPREF1058_RS06495 0.15 -1.2 465,526 + HMPREF1058_RS06495 0.15 -0.6 465,526 + HMPREF1058_RS06495 0.15 +3.6 465,527 - HMPREF1058_RS06495 0.16 -0.8 465,527 - HMPREF1058_RS06495 0.16 +1.6 465,527 - HMPREF1058_RS06495 0.16 +0.9 465,528 + HMPREF1058_RS06495 0.16 -1.6 465,529 - HMPREF1058_RS06495 0.16 +3.4 465,529 - HMPREF1058_RS06495 0.16 +3.1 465,530 + HMPREF1058_RS06495 0.16 +0.1 465,627 + HMPREF1058_RS06495 0.24 +0.3 465,627 + HMPREF1058_RS06495 0.24 +4.3 465,645 - HMPREF1058_RS06495 0.26 +3.3 465,647 + HMPREF1058_RS06495 0.26 +3.3 465,647 + HMPREF1058_RS06495 0.26 +5.1 465,648 - HMPREF1058_RS06495 0.26 +4.4 465,648 - HMPREF1058_RS06495 0.26 -0.2 465,660 + HMPREF1058_RS06495 0.27 +2.5 465,660 + HMPREF1058_RS06495 0.27 +3.5 465,660 + HMPREF1058_RS06495 0.27 +4.5 465,677 - HMPREF1058_RS06495 0.29 +2.7 465,729 - HMPREF1058_RS06495 0.33 +3.5 465,729 - HMPREF1058_RS06495 0.33 +3.3 465,747 - HMPREF1058_RS06495 0.35 -1.2 465,792 - HMPREF1058_RS06495 0.39 +5.4 465,838 - HMPREF1058_RS06495 0.43 +3.9 465,853 - HMPREF1058_RS06495 0.44 +0.4 465,905 + HMPREF1058_RS06495 0.49 -1.1 465,948 + HMPREF1058_RS06495 0.53 +3.6 465,949 - HMPREF1058_RS06495 0.53 -1.3 465,951 + HMPREF1058_RS06495 0.53 +4.8 465,987 - HMPREF1058_RS06495 0.56 +4.6 465,988 + HMPREF1058_RS06495 0.56 +3.0 465,988 + HMPREF1058_RS06495 0.56 +4.4 465,992 - HMPREF1058_RS06495 0.57 +4.3 466,000 + HMPREF1058_RS06495 0.57 -2.9 466,000 + HMPREF1058_RS06495 0.57 +5.8
Or see this region's nucleotide sequence