Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02675 and HMPREF1058_RS02670 are separated by 10 nucleotides HMPREF1058_RS02670 and HMPREF1058_RS02665 are separated by 1 nucleotides HMPREF1058_RS02665 and HMPREF1058_RS02660 overlap by 4 nucleotides
HMPREF1058_RS02675: HMPREF1058_RS02675 - CRISPR-associated helicase/endonuclease Cas3, at 128,520 to 130,745
_RS02675
HMPREF1058_RS02670: HMPREF1058_RS02670 - Bro-N domain-containing protein, at 130,756 to 131,616
_RS02670
HMPREF1058_RS02665: HMPREF1058_RS02665 - type I-C CRISPR-associated protein Cas5, at 131,618 to 132,298
_RS02665
HMPREF1058_RS02660: HMPREF1058_RS02660 - type I-C CRISPR-associated protein Cas8c/Csd1, at 132,295 to 134,016
_RS02660
Position (kb) 131
132
133 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 130.645 kb on + strand at 130.657 kb on + strand at 130.658 kb on - strand at 130.659 kb on + strand at 130.688 kb on + strand at 130.713 kb on - strand at 130.733 kb on - strand at 130.741 kb on + strand at 130.744 kb on - strand at 130.744 kb on - strand at 130.744 kb on - strand at 130.795 kb on - strand at 130.918 kb on - strand, within HMPREF1058_RS02670 at 131.085 kb on - strand, within HMPREF1058_RS02670 at 131.140 kb on - strand, within HMPREF1058_RS02670 at 131.150 kb on - strand, within HMPREF1058_RS02670 at 131.150 kb on - strand, within HMPREF1058_RS02670 at 131.241 kb on + strand, within HMPREF1058_RS02670 at 131.241 kb on + strand, within HMPREF1058_RS02670 at 131.242 kb on - strand, within HMPREF1058_RS02670 at 131.242 kb on - strand, within HMPREF1058_RS02670 at 131.242 kb on - strand, within HMPREF1058_RS02670 at 131.268 kb on + strand, within HMPREF1058_RS02670 at 131.269 kb on - strand, within HMPREF1058_RS02670 at 131.283 kb on + strand, within HMPREF1058_RS02670 at 131.284 kb on - strand, within HMPREF1058_RS02670 at 131.284 kb on - strand, within HMPREF1058_RS02670 at 131.284 kb on - strand, within HMPREF1058_RS02670 at 131.321 kb on - strand, within HMPREF1058_RS02670 at 131.365 kb on - strand, within HMPREF1058_RS02670 at 131.388 kb on + strand, within HMPREF1058_RS02670 at 131.418 kb on + strand, within HMPREF1058_RS02670 at 131.419 kb on - strand, within HMPREF1058_RS02670 at 131.425 kb on - strand, within HMPREF1058_RS02670 at 131.457 kb on + strand, within HMPREF1058_RS02670 at 131.538 kb on - strand at 131.639 kb on + strand at 131.695 kb on - strand, within HMPREF1058_RS02665 at 131.815 kb on + strand, within HMPREF1058_RS02665 at 131.869 kb on + strand, within HMPREF1058_RS02665 at 131.884 kb on + strand, within HMPREF1058_RS02665 at 131.885 kb on - strand, within HMPREF1058_RS02665 at 131.885 kb on - strand, within HMPREF1058_RS02665 at 131.936 kb on + strand, within HMPREF1058_RS02665 at 132.020 kb on - strand, within HMPREF1058_RS02665 at 132.027 kb on - strand, within HMPREF1058_RS02665 at 132.175 kb on + strand, within HMPREF1058_RS02665 at 132.233 kb on - strand at 132.312 kb on - strand at 132.319 kb on + strand at 132.320 kb on - strand at 132.397 kb on - strand at 132.435 kb on - strand at 132.439 kb on - strand at 132.522 kb on + strand, within HMPREF1058_RS02660 at 132.526 kb on + strand, within HMPREF1058_RS02660 at 132.531 kb on - strand, within HMPREF1058_RS02660 at 132.566 kb on + strand, within HMPREF1058_RS02660 at 132.567 kb on - strand, within HMPREF1058_RS02660 at 132.570 kb on + strand, within HMPREF1058_RS02660 at 132.571 kb on - strand, within HMPREF1058_RS02660 at 132.571 kb on - strand, within HMPREF1058_RS02660 at 132.571 kb on - strand, within HMPREF1058_RS02660 at 132.584 kb on + strand, within HMPREF1058_RS02660 at 132.585 kb on - strand, within HMPREF1058_RS02660 at 132.607 kb on - strand, within HMPREF1058_RS02660 at 132.609 kb on - strand, within HMPREF1058_RS02660 at 132.611 kb on - strand, within HMPREF1058_RS02660 at 132.685 kb on - strand, within HMPREF1058_RS02660 at 132.717 kb on + strand, within HMPREF1058_RS02660 at 132.718 kb on - strand, within HMPREF1058_RS02660 at 132.718 kb on - strand, within HMPREF1058_RS02660 at 132.764 kb on + strand, within HMPREF1058_RS02660 at 132.765 kb on - strand, within HMPREF1058_RS02660 at 132.903 kb on - strand, within HMPREF1058_RS02660 at 132.903 kb on - strand, within HMPREF1058_RS02660 at 132.903 kb on - strand, within HMPREF1058_RS02660 at 132.976 kb on - strand, within HMPREF1058_RS02660 at 132.982 kb on + strand, within HMPREF1058_RS02660 at 132.983 kb on - strand, within HMPREF1058_RS02660 at 133.020 kb on + strand, within HMPREF1058_RS02660 at 133.021 kb on - strand, within HMPREF1058_RS02660 at 133.088 kb on - strand, within HMPREF1058_RS02660 at 133.142 kb on + strand, within HMPREF1058_RS02660 at 133.205 kb on + strand, within HMPREF1058_RS02660 at 133.206 kb on - strand, within HMPREF1058_RS02660 at 133.208 kb on - strand, within HMPREF1058_RS02660 at 133.228 kb on + strand, within HMPREF1058_RS02660 at 133.228 kb on + strand, within HMPREF1058_RS02660
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) remove 130,645 + -0.7 130,657 + +0.4 130,658 - +1.3 130,659 + +0.6 130,688 + +1.6 130,713 - +1.1 130,733 - -1.4 130,741 + +0.4 130,744 - -2.2 130,744 - +1.7 130,744 - -1.9 130,795 - +2.7 130,918 - HMPREF1058_RS02670 0.19 -0.5 131,085 - HMPREF1058_RS02670 0.38 +1.1 131,140 - HMPREF1058_RS02670 0.45 +1.0 131,150 - HMPREF1058_RS02670 0.46 -1.1 131,150 - HMPREF1058_RS02670 0.46 +3.0 131,241 + HMPREF1058_RS02670 0.56 +0.8 131,241 + HMPREF1058_RS02670 0.56 +0.1 131,242 - HMPREF1058_RS02670 0.56 +0.0 131,242 - HMPREF1058_RS02670 0.56 +0.3 131,242 - HMPREF1058_RS02670 0.56 +1.9 131,268 + HMPREF1058_RS02670 0.59 -2.2 131,269 - HMPREF1058_RS02670 0.60 +1.5 131,283 + HMPREF1058_RS02670 0.61 -2.9 131,284 - HMPREF1058_RS02670 0.61 -0.8 131,284 - HMPREF1058_RS02670 0.61 -1.1 131,284 - HMPREF1058_RS02670 0.61 +0.7 131,321 - HMPREF1058_RS02670 0.66 -0.2 131,365 - HMPREF1058_RS02670 0.71 -0.8 131,388 + HMPREF1058_RS02670 0.73 -1.0 131,418 + HMPREF1058_RS02670 0.77 -0.5 131,419 - HMPREF1058_RS02670 0.77 +0.5 131,425 - HMPREF1058_RS02670 0.78 +0.0 131,457 + HMPREF1058_RS02670 0.81 -1.9 131,538 - -2.0 131,639 + +2.3 131,695 - HMPREF1058_RS02665 0.11 +0.4 131,815 + HMPREF1058_RS02665 0.29 -0.5 131,869 + HMPREF1058_RS02665 0.37 -1.6 131,884 + HMPREF1058_RS02665 0.39 +1.3 131,885 - HMPREF1058_RS02665 0.39 +1.1 131,885 - HMPREF1058_RS02665 0.39 -0.2 131,936 + HMPREF1058_RS02665 0.47 +1.1 132,020 - HMPREF1058_RS02665 0.59 +2.9 132,027 - HMPREF1058_RS02665 0.60 +0.5 132,175 + HMPREF1058_RS02665 0.82 -1.4 132,233 - -1.0 132,312 - -1.0 132,319 + +0.1 132,320 - +0.2 132,397 - -1.2 132,435 - -0.8 132,439 - -2.8 132,522 + HMPREF1058_RS02660 0.13 +1.7 132,526 + HMPREF1058_RS02660 0.13 -1.8 132,531 - HMPREF1058_RS02660 0.14 -2.0 132,566 + HMPREF1058_RS02660 0.16 +0.2 132,567 - HMPREF1058_RS02660 0.16 -3.1 132,570 + HMPREF1058_RS02660 0.16 -0.5 132,571 - HMPREF1058_RS02660 0.16 +1.2 132,571 - HMPREF1058_RS02660 0.16 -2.1 132,571 - HMPREF1058_RS02660 0.16 -0.1 132,584 + HMPREF1058_RS02660 0.17 -0.8 132,585 - HMPREF1058_RS02660 0.17 +1.1 132,607 - HMPREF1058_RS02660 0.18 -0.9 132,609 - HMPREF1058_RS02660 0.18 +0.7 132,611 - HMPREF1058_RS02660 0.18 -3.8 132,685 - HMPREF1058_RS02660 0.23 +0.7 132,717 + HMPREF1058_RS02660 0.25 -0.6 132,718 - HMPREF1058_RS02660 0.25 +0.5 132,718 - HMPREF1058_RS02660 0.25 -0.8 132,764 + HMPREF1058_RS02660 0.27 -2.4 132,765 - HMPREF1058_RS02660 0.27 +0.2 132,903 - HMPREF1058_RS02660 0.35 +0.7 132,903 - HMPREF1058_RS02660 0.35 -2.8 132,903 - HMPREF1058_RS02660 0.35 +1.6 132,976 - HMPREF1058_RS02660 0.40 +0.8 132,982 + HMPREF1058_RS02660 0.40 -1.8 132,983 - HMPREF1058_RS02660 0.40 +0.6 133,020 + HMPREF1058_RS02660 0.42 +0.5 133,021 - HMPREF1058_RS02660 0.42 +1.0 133,088 - HMPREF1058_RS02660 0.46 +0.8 133,142 + HMPREF1058_RS02660 0.49 -0.4 133,205 + HMPREF1058_RS02660 0.53 +0.5 133,206 - HMPREF1058_RS02660 0.53 -0.6 133,208 - HMPREF1058_RS02660 0.53 -0.9 133,228 + HMPREF1058_RS02660 0.54 +1.1 133,228 + HMPREF1058_RS02660 0.54 +2.2
Or see this region's nucleotide sequence