Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18165 and HMPREF1058_RS20215 are separated by 131 nucleotides HMPREF1058_RS20215 and HMPREF1058_RS0119310 overlap by 4 nucleotides HMPREF1058_RS0119310 and HMPREF1058_RS18160 are separated by 107 nucleotides HMPREF1058_RS18160 and HMPREF1058_RS18155 are separated by 139 nucleotides
HMPREF1058_RS18165: HMPREF1058_RS18165 - toprim domain-containing protein, at 242,634 to 243,674
_RS18165
HMPREF1058_RS20215: HMPREF1058_RS20215 - hypothetical protein, at 243,806 to 244,141
_RS20215
HMPREF1058_RS0119310: HMPREF1058_RS0119310 - DUF3987 domain-containing protein, at 244,138 to 245,163
_RS0119310
HMPREF1058_RS18160: HMPREF1058_RS18160 - hypothetical protein, at 245,271 to 245,513
_RS18160
HMPREF1058_RS18155: HMPREF1058_RS18155 - helix-turn-helix transcriptional regulator, at 245,653 to 246,315
_RS18155
Position (kb) 244
245
246 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 243.402 kb on - strand, within HMPREF1058_RS18165 at 243.555 kb on - strand, within HMPREF1058_RS18165 at 243.555 kb on - strand, within HMPREF1058_RS18165 at 243.555 kb on - strand, within HMPREF1058_RS18165 at 243.630 kb on + strand at 243.649 kb on - strand at 243.650 kb on + strand at 243.651 kb on - strand at 243.742 kb on + strand at 243.742 kb on + strand at 243.743 kb on - strand at 243.807 kb on + strand at 243.820 kb on + strand at 243.821 kb on - strand at 243.821 kb on - strand at 243.934 kb on + strand, within HMPREF1058_RS20215 at 243.935 kb on - strand, within HMPREF1058_RS20215 at 243.961 kb on - strand, within HMPREF1058_RS20215 at 243.961 kb on - strand, within HMPREF1058_RS20215 at 243.993 kb on - strand, within HMPREF1058_RS20215 at 243.995 kb on + strand, within HMPREF1058_RS20215 at 243.997 kb on + strand, within HMPREF1058_RS20215 at 244.016 kb on - strand, within HMPREF1058_RS20215 at 244.016 kb on - strand, within HMPREF1058_RS20215 at 244.016 kb on - strand, within HMPREF1058_RS20215 at 244.158 kb on + strand at 244.158 kb on + strand at 244.159 kb on - strand at 244.159 kb on - strand at 244.159 kb on - strand at 244.160 kb on + strand at 244.160 kb on + strand at 244.161 kb on - strand at 244.161 kb on - strand at 244.161 kb on - strand at 244.162 kb on + strand at 244.162 kb on + strand at 244.162 kb on + strand at 244.162 kb on + strand at 244.162 kb on + strand at 244.162 kb on + strand at 244.178 kb on + strand at 244.179 kb on - strand at 244.180 kb on + strand at 244.217 kb on - strand at 244.225 kb on - strand at 244.230 kb on + strand at 244.230 kb on + strand at 244.230 kb on + strand at 244.255 kb on - strand, within HMPREF1058_RS0119310 at 244.267 kb on - strand, within HMPREF1058_RS0119310 at 244.288 kb on + strand, within HMPREF1058_RS0119310 at 244.289 kb on - strand, within HMPREF1058_RS0119310 at 244.289 kb on - strand, within HMPREF1058_RS0119310 at 244.315 kb on - strand, within HMPREF1058_RS0119310 at 244.363 kb on + strand, within HMPREF1058_RS0119310 at 244.410 kb on + strand, within HMPREF1058_RS0119310 at 244.516 kb on - strand, within HMPREF1058_RS0119310 at 244.564 kb on + strand, within HMPREF1058_RS0119310 at 244.618 kb on - strand, within HMPREF1058_RS0119310 at 244.620 kb on + strand, within HMPREF1058_RS0119310 at 244.621 kb on - strand, within HMPREF1058_RS0119310 at 244.623 kb on - strand, within HMPREF1058_RS0119310 at 244.664 kb on + strand, within HMPREF1058_RS0119310 at 244.884 kb on + strand, within HMPREF1058_RS0119310 at 244.931 kb on + strand, within HMPREF1058_RS0119310 at 244.931 kb on + strand at 244.988 kb on - strand, within HMPREF1058_RS0119310 at 244.989 kb on + strand, within HMPREF1058_RS0119310 at 244.990 kb on - strand, within HMPREF1058_RS0119310 at 245.011 kb on + strand, within HMPREF1058_RS0119310 at 245.012 kb on - strand, within HMPREF1058_RS0119310 at 245.014 kb on - strand, within HMPREF1058_RS0119310 at 245.039 kb on + strand, within HMPREF1058_RS0119310 at 245.139 kb on + strand at 245.139 kb on + strand at 245.140 kb on - strand at 245.140 kb on - strand at 245.407 kb on + strand, within HMPREF1058_RS18160 at 245.407 kb on + strand, within HMPREF1058_RS18160 at 245.408 kb on - strand, within HMPREF1058_RS18160 at 245.408 kb on - strand, within HMPREF1058_RS18160 at 245.644 kb on + strand at 245.672 kb on + strand at 245.699 kb on + strand at 245.898 kb on + strand, within HMPREF1058_RS18155 at 246.081 kb on + strand, within HMPREF1058_RS18155 at 246.138 kb on + strand, within HMPREF1058_RS18155 at 246.142 kb on + strand, within HMPREF1058_RS18155
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) remove 243,402 - HMPREF1058_RS18165 0.74 -1.8 243,555 - HMPREF1058_RS18165 0.88 -0.0 243,555 - HMPREF1058_RS18165 0.88 -0.6 243,555 - HMPREF1058_RS18165 0.88 +0.7 243,630 + +0.0 243,649 - +1.3 243,650 + -1.0 243,651 - -0.6 243,742 + +0.5 243,742 + -0.5 243,743 - -1.8 243,807 + +0.1 243,820 + -3.2 243,821 - +1.0 243,821 - -0.5 243,934 + HMPREF1058_RS20215 0.38 -0.3 243,935 - HMPREF1058_RS20215 0.38 -0.6 243,961 - HMPREF1058_RS20215 0.46 +0.7 243,961 - HMPREF1058_RS20215 0.46 +2.4 243,993 - HMPREF1058_RS20215 0.56 +0.9 243,995 + HMPREF1058_RS20215 0.56 +3.0 243,997 + HMPREF1058_RS20215 0.57 +1.1 244,016 - HMPREF1058_RS20215 0.62 -4.2 244,016 - HMPREF1058_RS20215 0.62 +2.6 244,016 - HMPREF1058_RS20215 0.62 -1.3 244,158 + +2.2 244,158 + -2.1 244,159 - -0.8 244,159 - -3.5 244,159 - -1.6 244,160 + -3.2 244,160 + -0.7 244,161 - +0.9 244,161 - -2.6 244,161 - -1.2 244,162 + -1.5 244,162 + +1.7 244,162 + -1.2 244,162 + +0.4 244,162 + -0.1 244,162 + +0.4 244,178 + -1.0 244,179 - +0.8 244,180 + -2.8 244,217 - -0.3 244,225 - +1.1 244,230 + +3.0 244,230 + -2.2 244,230 + +3.3 244,255 - HMPREF1058_RS0119310 0.11 -0.4 244,267 - HMPREF1058_RS0119310 0.13 -0.6 244,288 + HMPREF1058_RS0119310 0.15 +0.2 244,289 - HMPREF1058_RS0119310 0.15 +0.0 244,289 - HMPREF1058_RS0119310 0.15 -1.2 244,315 - HMPREF1058_RS0119310 0.17 -2.4 244,363 + HMPREF1058_RS0119310 0.22 -1.8 244,410 + HMPREF1058_RS0119310 0.27 -0.3 244,516 - HMPREF1058_RS0119310 0.37 -0.5 244,564 + HMPREF1058_RS0119310 0.42 +1.8 244,618 - HMPREF1058_RS0119310 0.47 +2.2 244,620 + HMPREF1058_RS0119310 0.47 -0.8 244,621 - HMPREF1058_RS0119310 0.47 -1.1 244,623 - HMPREF1058_RS0119310 0.47 +2.6 244,664 + HMPREF1058_RS0119310 0.51 -2.3 244,884 + HMPREF1058_RS0119310 0.73 -1.3 244,931 + HMPREF1058_RS0119310 0.77 -0.8 244,931 + -0.8 244,988 - HMPREF1058_RS0119310 0.83 +1.6 244,989 + HMPREF1058_RS0119310 0.83 +0.8 244,990 - HMPREF1058_RS0119310 0.83 -3.0 245,011 + HMPREF1058_RS0119310 0.85 +0.8 245,012 - HMPREF1058_RS0119310 0.85 -1.3 245,014 - HMPREF1058_RS0119310 0.85 +0.4 245,039 + HMPREF1058_RS0119310 0.88 +0.5 245,139 + -2.0 245,139 + -2.2 245,140 - -0.0 245,140 - -2.5 245,407 + HMPREF1058_RS18160 0.56 +1.6 245,407 + HMPREF1058_RS18160 0.56 +1.8 245,408 - HMPREF1058_RS18160 0.56 -0.3 245,408 - HMPREF1058_RS18160 0.56 -1.5 245,644 + -1.2 245,672 + -2.5 245,699 + +0.5 245,898 + HMPREF1058_RS18155 0.37 -0.4 246,081 + HMPREF1058_RS18155 0.65 +2.4 246,138 + HMPREF1058_RS18155 0.73 +1.4 246,142 + HMPREF1058_RS18155 0.74 -1.0
Or see this region's nucleotide sequence