Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17615 and HMPREF1058_RS17610 are separated by 16 nucleotides HMPREF1058_RS17610 and HMPREF1058_RS17605 are separated by 39 nucleotides HMPREF1058_RS17605 and HMPREF1058_RS17600 are separated by 132 nucleotides HMPREF1058_RS17600 and HMPREF1058_RS17595 are separated by 191 nucleotides
HMPREF1058_RS17615: HMPREF1058_RS17615 - inorganic phosphate transporter, at 387,227 to 388,240
_RS17615
HMPREF1058_RS17610: HMPREF1058_RS17610 - DUF47 domain-containing protein, at 388,257 to 388,904
_RS17610
HMPREF1058_RS17605: HMPREF1058_RS17605 - DedA family protein, at 388,944 to 389,588
_RS17605
HMPREF1058_RS17600: HMPREF1058_RS17600 - hypothetical protein, at 389,721 to 390,146
_RS17600
HMPREF1058_RS17595: HMPREF1058_RS17595 - Lrp/AsnC family transcriptional regulator, at 390,338 to 390,808
_RS17595
Position (kb) 388
389
390 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 388.009 kb on + strand, within HMPREF1058_RS17615 at 388.009 kb on + strand, within HMPREF1058_RS17615 at 388.011 kb on + strand, within HMPREF1058_RS17615 at 388.012 kb on - strand, within HMPREF1058_RS17615 at 388.078 kb on + strand, within HMPREF1058_RS17615 at 388.192 kb on + strand at 388.223 kb on - strand at 388.246 kb on - strand at 388.246 kb on - strand at 388.258 kb on + strand at 388.339 kb on - strand, within HMPREF1058_RS17610 at 388.363 kb on - strand, within HMPREF1058_RS17610 at 388.461 kb on + strand, within HMPREF1058_RS17610 at 388.462 kb on - strand, within HMPREF1058_RS17610 at 388.513 kb on - strand, within HMPREF1058_RS17610 at 388.514 kb on + strand, within HMPREF1058_RS17610 at 388.533 kb on + strand, within HMPREF1058_RS17610 at 388.534 kb on - strand, within HMPREF1058_RS17610 at 388.545 kb on + strand at 388.582 kb on + strand, within HMPREF1058_RS17610 at 388.620 kb on + strand, within HMPREF1058_RS17610 at 388.620 kb on + strand, within HMPREF1058_RS17610 at 388.634 kb on + strand, within HMPREF1058_RS17610 at 388.760 kb on - strand, within HMPREF1058_RS17610 at 388.946 kb on - strand at 388.968 kb on - strand at 388.977 kb on + strand at 389.000 kb on + strand at 389.016 kb on - strand, within HMPREF1058_RS17605 at 389.047 kb on - strand, within HMPREF1058_RS17605 at 389.090 kb on + strand, within HMPREF1058_RS17605 at 389.121 kb on - strand, within HMPREF1058_RS17605 at 389.123 kb on - strand, within HMPREF1058_RS17605 at 389.187 kb on + strand, within HMPREF1058_RS17605 at 389.188 kb on - strand, within HMPREF1058_RS17605 at 389.189 kb on + strand, within HMPREF1058_RS17605 at 389.274 kb on + strand, within HMPREF1058_RS17605 at 389.274 kb on + strand, within HMPREF1058_RS17605 at 389.275 kb on - strand, within HMPREF1058_RS17605 at 389.304 kb on - strand, within HMPREF1058_RS17605 at 389.327 kb on + strand, within HMPREF1058_RS17605 at 389.382 kb on - strand, within HMPREF1058_RS17605 at 389.385 kb on - strand, within HMPREF1058_RS17605 at 389.495 kb on + strand, within HMPREF1058_RS17605 at 389.509 kb on + strand, within HMPREF1058_RS17605 at 389.519 kb on + strand, within HMPREF1058_RS17605 at 389.520 kb on - strand, within HMPREF1058_RS17605 at 389.537 kb on + strand at 389.538 kb on - strand at 389.547 kb on - strand at 389.567 kb on + strand at 389.591 kb on + strand at 389.591 kb on + strand at 389.592 kb on - strand at 389.592 kb on - strand at 389.594 kb on - strand at 389.594 kb on - strand at 389.600 kb on + strand at 389.603 kb on + strand at 389.604 kb on - strand at 389.608 kb on + strand at 389.609 kb on - strand at 389.611 kb on - strand at 389.681 kb on - strand at 389.681 kb on - strand at 389.718 kb on - strand at 389.750 kb on + strand at 389.752 kb on + strand at 389.753 kb on - strand at 389.775 kb on - strand, within HMPREF1058_RS17600 at 389.780 kb on - strand, within HMPREF1058_RS17600 at 389.786 kb on + strand, within HMPREF1058_RS17600 at 389.919 kb on - strand, within HMPREF1058_RS17600 at 389.945 kb on - strand, within HMPREF1058_RS17600 at 389.968 kb on - strand, within HMPREF1058_RS17600 at 389.993 kb on + strand, within HMPREF1058_RS17600 at 389.994 kb on - strand, within HMPREF1058_RS17600 at 390.008 kb on + strand, within HMPREF1058_RS17600 at 390.106 kb on - strand at 390.106 kb on - strand at 390.119 kb on + strand at 390.120 kb on - strand at 390.122 kb on - strand at 390.130 kb on + strand at 390.131 kb on - strand at 390.131 kb on - strand at 390.132 kb on + strand at 390.132 kb on + strand at 390.132 kb on + strand at 390.135 kb on - strand at 390.135 kb on - strand at 390.135 kb on - strand at 390.137 kb on - strand at 390.146 kb on + strand at 390.228 kb on + strand at 390.228 kb on + strand at 390.239 kb on + strand at 390.239 kb on + strand at 390.240 kb on - strand at 390.267 kb on + strand at 390.283 kb on + strand at 390.284 kb on - strand at 390.284 kb on - strand at 390.308 kb on - strand at 390.333 kb on - strand at 390.343 kb on + strand at 390.382 kb on - strand at 390.386 kb on - strand, within HMPREF1058_RS17595 at 390.386 kb on - strand, within HMPREF1058_RS17595 at 390.491 kb on + strand, within HMPREF1058_RS17595 at 390.491 kb on + strand, within HMPREF1058_RS17595 at 390.492 kb on - strand, within HMPREF1058_RS17595 at 390.567 kb on + strand, within HMPREF1058_RS17595
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) remove 388,009 + HMPREF1058_RS17615 0.77 -0.9 388,009 + HMPREF1058_RS17615 0.77 -2.2 388,011 + HMPREF1058_RS17615 0.77 -0.3 388,012 - HMPREF1058_RS17615 0.77 +1.9 388,078 + HMPREF1058_RS17615 0.84 +4.5 388,192 + +0.5 388,223 - -1.1 388,246 - +2.5 388,246 - -2.9 388,258 + +0.0 388,339 - HMPREF1058_RS17610 0.13 +0.7 388,363 - HMPREF1058_RS17610 0.16 +0.9 388,461 + HMPREF1058_RS17610 0.31 +1.8 388,462 - HMPREF1058_RS17610 0.32 +0.3 388,513 - HMPREF1058_RS17610 0.40 -0.5 388,514 + HMPREF1058_RS17610 0.40 +0.5 388,533 + HMPREF1058_RS17610 0.43 -0.9 388,534 - HMPREF1058_RS17610 0.43 -1.8 388,545 + -1.1 388,582 + HMPREF1058_RS17610 0.50 -0.1 388,620 + HMPREF1058_RS17610 0.56 +1.1 388,620 + HMPREF1058_RS17610 0.56 +2.6 388,634 + HMPREF1058_RS17610 0.58 -2.5 388,760 - HMPREF1058_RS17610 0.78 +0.2 388,946 - -0.1 388,968 - -0.9 388,977 + -1.7 389,000 + -3.2 389,016 - HMPREF1058_RS17605 0.11 -0.7 389,047 - HMPREF1058_RS17605 0.16 -2.8 389,090 + HMPREF1058_RS17605 0.23 -2.3 389,121 - HMPREF1058_RS17605 0.27 -1.6 389,123 - HMPREF1058_RS17605 0.28 +0.3 389,187 + HMPREF1058_RS17605 0.38 -0.2 389,188 - HMPREF1058_RS17605 0.38 -1.8 389,189 + HMPREF1058_RS17605 0.38 -1.1 389,274 + HMPREF1058_RS17605 0.51 +1.3 389,274 + HMPREF1058_RS17605 0.51 -0.7 389,275 - HMPREF1058_RS17605 0.51 -0.1 389,304 - HMPREF1058_RS17605 0.56 -2.6 389,327 + HMPREF1058_RS17605 0.59 -0.4 389,382 - HMPREF1058_RS17605 0.68 -2.0 389,385 - HMPREF1058_RS17605 0.68 -2.9 389,495 + HMPREF1058_RS17605 0.85 -3.6 389,509 + HMPREF1058_RS17605 0.88 -3.8 389,519 + HMPREF1058_RS17605 0.89 +0.4 389,520 - HMPREF1058_RS17605 0.89 +1.3 389,537 + -1.3 389,538 - +0.2 389,547 - -2.6 389,567 + -0.4 389,591 + -2.1 389,591 + -3.9 389,592 - +0.7 389,592 - -0.5 389,594 - -3.1 389,594 - +1.3 389,600 + +0.8 389,603 + +0.9 389,604 - -0.1 389,608 + -0.1 389,609 - -0.1 389,611 - -3.3 389,681 - -2.5 389,681 - -2.8 389,718 - +1.0 389,750 + -0.1 389,752 + +1.5 389,753 - +0.0 389,775 - HMPREF1058_RS17600 0.13 -2.0 389,780 - HMPREF1058_RS17600 0.14 -2.4 389,786 + HMPREF1058_RS17600 0.15 -1.0 389,919 - HMPREF1058_RS17600 0.46 -1.6 389,945 - HMPREF1058_RS17600 0.53 -2.4 389,968 - HMPREF1058_RS17600 0.58 +0.6 389,993 + HMPREF1058_RS17600 0.64 -0.4 389,994 - HMPREF1058_RS17600 0.64 -2.0 390,008 + HMPREF1058_RS17600 0.67 -1.3 390,106 - +1.1 390,106 - -0.2 390,119 + +0.9 390,120 - +2.0 390,122 - +0.6 390,130 + +1.1 390,131 - -0.4 390,131 - +0.7 390,132 + +0.6 390,132 + +0.6 390,132 + +2.2 390,135 - +0.0 390,135 - +3.2 390,135 - +1.3 390,137 - +1.2 390,146 + -1.1 390,228 + +0.4 390,228 + +0.5 390,239 + +2.1 390,239 + -2.3 390,240 - +0.7 390,267 + -3.1 390,283 + +0.2 390,284 - +0.9 390,284 - -1.3 390,308 - -1.4 390,333 - +0.7 390,343 + -1.5 390,382 - +0.6 390,386 - HMPREF1058_RS17595 0.10 -1.1 390,386 - HMPREF1058_RS17595 0.10 +0.8 390,491 + HMPREF1058_RS17595 0.32 +0.4 390,491 + HMPREF1058_RS17595 0.32 -2.6 390,492 - HMPREF1058_RS17595 0.33 -0.4 390,567 + HMPREF1058_RS17595 0.49 -3.6
Or see this region's nucleotide sequence