Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS13285 and HMPREF1058_RS13280 are separated by 1 nucleotides HMPREF1058_RS13280 and HMPREF1058_RS21600 overlap by 18 nucleotides HMPREF1058_RS21600 and HMPREF1058_RS13275 are separated by 290 nucleotides HMPREF1058_RS13275 and HMPREF1058_RS13270 are separated by 63 nucleotides
HMPREF1058_RS13285: HMPREF1058_RS13285 - glycoside hydrolase family 88 protein, at 1,537,656 to 1,538,882
_RS13285
HMPREF1058_RS13280: HMPREF1058_RS13280 - ATP-binding protein, at 1,538,884 to 1,539,126
_RS13280
HMPREF1058_RS21600: HMPREF1058_RS21600 - histidine kinase, at 1,539,109 to 1,539,270
_RS21600
HMPREF1058_RS13275: HMPREF1058_RS13275 - glycoside hydrolase family 28 protein, at 1,539,561 to 1,540,967
_RS13275
HMPREF1058_RS13270: HMPREF1058_RS13270 - GTP-binding protein, at 1,541,031 to 1,542,281
_RS13270
Position (kb) 1539
1540
1541 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1538.621 kb on + strand, within HMPREF1058_RS13285 at 1538.623 kb on + strand, within HMPREF1058_RS13285 at 1538.685 kb on + strand, within HMPREF1058_RS13285 at 1538.699 kb on + strand, within HMPREF1058_RS13285 at 1538.700 kb on - strand, within HMPREF1058_RS13285 at 1538.711 kb on - strand, within HMPREF1058_RS13285 at 1538.800 kb on + strand at 1538.801 kb on - strand at 1538.827 kb on - strand at 1538.880 kb on + strand at 1538.880 kb on + strand at 1538.881 kb on - strand at 1538.887 kb on + strand at 1538.968 kb on - strand, within HMPREF1058_RS13280 at 1538.968 kb on - strand, within HMPREF1058_RS13280 at 1539.001 kb on + strand, within HMPREF1058_RS13280 at 1539.001 kb on + strand, within HMPREF1058_RS13280 at 1539.049 kb on + strand, within HMPREF1058_RS13280 at 1539.122 kb on - strand at 1539.126 kb on + strand at 1539.159 kb on + strand, within HMPREF1058_RS21600 at 1539.203 kb on + strand, within HMPREF1058_RS21600 at 1539.215 kb on - strand, within HMPREF1058_RS21600 at 1539.215 kb on - strand, within HMPREF1058_RS21600 at 1539.223 kb on - strand, within HMPREF1058_RS21600 at 1539.268 kb on + strand at 1539.269 kb on - strand at 1539.275 kb on + strand at 1539.276 kb on - strand at 1539.276 kb on - strand at 1539.276 kb on - strand at 1539.277 kb on + strand at 1539.278 kb on - strand at 1539.278 kb on - strand at 1539.293 kb on - strand at 1539.304 kb on + strand at 1539.310 kb on + strand at 1539.352 kb on + strand at 1539.353 kb on - strand at 1539.356 kb on + strand at 1539.356 kb on + strand at 1539.357 kb on - strand at 1539.367 kb on + strand at 1539.367 kb on + strand at 1539.367 kb on + strand at 1539.378 kb on - strand at 1539.412 kb on + strand at 1539.438 kb on + strand at 1539.489 kb on + strand at 1539.490 kb on - strand at 1539.490 kb on - strand at 1539.491 kb on + strand at 1539.492 kb on - strand at 1539.574 kb on + strand at 1539.578 kb on + strand at 1539.591 kb on - strand at 1539.592 kb on + strand at 1539.601 kb on - strand at 1539.625 kb on + strand at 1539.746 kb on - strand, within HMPREF1058_RS13275 at 1539.746 kb on - strand, within HMPREF1058_RS13275 at 1539.770 kb on - strand, within HMPREF1058_RS13275 at 1539.913 kb on - strand, within HMPREF1058_RS13275 at 1539.917 kb on - strand, within HMPREF1058_RS13275 at 1539.920 kb on + strand, within HMPREF1058_RS13275 at 1539.921 kb on - strand, within HMPREF1058_RS13275 at 1539.953 kb on - strand, within HMPREF1058_RS13275 at 1539.982 kb on - strand, within HMPREF1058_RS13275 at 1540.043 kb on + strand, within HMPREF1058_RS13275 at 1540.050 kb on - strand, within HMPREF1058_RS13275 at 1540.061 kb on + strand, within HMPREF1058_RS13275 at 1540.062 kb on - strand, within HMPREF1058_RS13275 at 1540.098 kb on - strand, within HMPREF1058_RS13275 at 1540.098 kb on - strand, within HMPREF1058_RS13275 at 1540.132 kb on + strand, within HMPREF1058_RS13275 at 1540.166 kb on + strand, within HMPREF1058_RS13275 at 1540.208 kb on + strand, within HMPREF1058_RS13275 at 1540.216 kb on + strand, within HMPREF1058_RS13275 at 1540.217 kb on - strand, within HMPREF1058_RS13275 at 1540.217 kb on - strand, within HMPREF1058_RS13275 at 1540.217 kb on - strand, within HMPREF1058_RS13275 at 1540.249 kb on + strand, within HMPREF1058_RS13275 at 1540.288 kb on + strand, within HMPREF1058_RS13275 at 1540.371 kb on - strand, within HMPREF1058_RS13275 at 1540.371 kb on - strand, within HMPREF1058_RS13275 at 1540.381 kb on + strand, within HMPREF1058_RS13275 at 1540.382 kb on - strand, within HMPREF1058_RS13275 at 1540.395 kb on - strand, within HMPREF1058_RS13275 at 1540.427 kb on + strand, within HMPREF1058_RS13275 at 1540.465 kb on + strand, within HMPREF1058_RS13275 at 1540.466 kb on - strand, within HMPREF1058_RS13275 at 1540.486 kb on + strand, within HMPREF1058_RS13275 at 1540.553 kb on + strand, within HMPREF1058_RS13275 at 1540.553 kb on + strand, within HMPREF1058_RS13275 at 1540.664 kb on + strand, within HMPREF1058_RS13275 at 1540.676 kb on - strand, within HMPREF1058_RS13275 at 1540.768 kb on + strand, within HMPREF1058_RS13275 at 1540.768 kb on + strand, within HMPREF1058_RS13275 at 1540.769 kb on - strand, within HMPREF1058_RS13275 at 1540.769 kb on - strand, within HMPREF1058_RS13275 at 1540.858 kb on + strand at 1540.883 kb on - strand at 1540.921 kb on + strand at 1540.939 kb on - strand at 1540.940 kb on + strand at 1540.941 kb on - strand at 1541.015 kb on - strand at 1541.032 kb on + strand at 1541.033 kb on - strand at 1541.108 kb on + strand at 1541.120 kb on - strand at 1541.123 kb on + strand at 1541.123 kb on + strand at 1541.169 kb on + strand, within HMPREF1058_RS13270 at 1541.258 kb on + strand, within HMPREF1058_RS13270 at 1541.304 kb on - strand, within HMPREF1058_RS13270 at 1541.306 kb on + strand, within HMPREF1058_RS13270 at 1541.307 kb on - strand, within HMPREF1058_RS13270 at 1541.372 kb on - strand, within HMPREF1058_RS13270 at 1541.382 kb on - strand, within HMPREF1058_RS13270 at 1541.393 kb on - strand, within HMPREF1058_RS13270 at 1541.409 kb on - strand, within HMPREF1058_RS13270 at 1541.409 kb on - strand, within HMPREF1058_RS13270 at 1541.563 kb on + strand, within HMPREF1058_RS13270 at 1541.568 kb on + strand, within HMPREF1058_RS13270 at 1541.569 kb on - strand at 1541.569 kb on - strand, within HMPREF1058_RS13270 at 1541.604 kb on + strand, within HMPREF1058_RS13270 at 1541.694 kb on + strand, within HMPREF1058_RS13270 at 1541.694 kb on + strand, within HMPREF1058_RS13270 at 1541.879 kb on + strand, within HMPREF1058_RS13270 at 1541.879 kb on + strand, within HMPREF1058_RS13270 at 1541.933 kb on - strand, within HMPREF1058_RS13270 at 1541.955 kb on - strand, within HMPREF1058_RS13270 at 1541.957 kb on + strand, within HMPREF1058_RS13270 at 1541.958 kb on - strand, within HMPREF1058_RS13270
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) remove 1,538,621 + HMPREF1058_RS13285 0.79 -0.2 1,538,623 + HMPREF1058_RS13285 0.79 -0.9 1,538,685 + HMPREF1058_RS13285 0.84 +0.9 1,538,699 + HMPREF1058_RS13285 0.85 +1.2 1,538,700 - HMPREF1058_RS13285 0.85 +0.0 1,538,711 - HMPREF1058_RS13285 0.86 +1.7 1,538,800 + -0.5 1,538,801 - -0.0 1,538,827 - -1.6 1,538,880 + -1.4 1,538,880 + -1.4 1,538,881 - +0.9 1,538,887 + -0.4 1,538,968 - HMPREF1058_RS13280 0.35 +1.5 1,538,968 - HMPREF1058_RS13280 0.35 -0.0 1,539,001 + HMPREF1058_RS13280 0.48 -2.4 1,539,001 + HMPREF1058_RS13280 0.48 +0.9 1,539,049 + HMPREF1058_RS13280 0.68 -1.8 1,539,122 - -2.0 1,539,126 + +0.6 1,539,159 + HMPREF1058_RS21600 0.31 -0.3 1,539,203 + HMPREF1058_RS21600 0.58 -2.7 1,539,215 - HMPREF1058_RS21600 0.65 +2.1 1,539,215 - HMPREF1058_RS21600 0.65 +0.6 1,539,223 - HMPREF1058_RS21600 0.70 +0.6 1,539,268 + +0.4 1,539,269 - +0.7 1,539,275 + -1.0 1,539,276 - -0.7 1,539,276 - -0.5 1,539,276 - +2.2 1,539,277 + -3.3 1,539,278 - +0.0 1,539,278 - +1.0 1,539,293 - +0.2 1,539,304 + +1.2 1,539,310 + -0.4 1,539,352 + +0.4 1,539,353 - -1.8 1,539,356 + -2.2 1,539,356 + -0.9 1,539,357 - -0.1 1,539,367 + +1.1 1,539,367 + +1.0 1,539,367 + -0.3 1,539,378 - -0.4 1,539,412 + +1.2 1,539,438 + +0.3 1,539,489 + -0.1 1,539,490 - +0.7 1,539,490 - +1.1 1,539,491 + -0.9 1,539,492 - +0.1 1,539,574 + +1.0 1,539,578 + +0.1 1,539,591 - -3.3 1,539,592 + +0.1 1,539,601 - -3.5 1,539,625 + +0.3 1,539,746 - HMPREF1058_RS13275 0.13 +0.2 1,539,746 - HMPREF1058_RS13275 0.13 +0.0 1,539,770 - HMPREF1058_RS13275 0.15 +2.7 1,539,913 - HMPREF1058_RS13275 0.25 -0.7 1,539,917 - HMPREF1058_RS13275 0.25 -0.3 1,539,920 + HMPREF1058_RS13275 0.26 +1.3 1,539,921 - HMPREF1058_RS13275 0.26 +0.4 1,539,953 - HMPREF1058_RS13275 0.28 +0.6 1,539,982 - HMPREF1058_RS13275 0.30 -2.7 1,540,043 + HMPREF1058_RS13275 0.34 +0.1 1,540,050 - HMPREF1058_RS13275 0.35 +0.4 1,540,061 + HMPREF1058_RS13275 0.36 -1.0 1,540,062 - HMPREF1058_RS13275 0.36 +0.8 1,540,098 - HMPREF1058_RS13275 0.38 +0.9 1,540,098 - HMPREF1058_RS13275 0.38 +0.4 1,540,132 + HMPREF1058_RS13275 0.41 -1.7 1,540,166 + HMPREF1058_RS13275 0.43 +0.4 1,540,208 + HMPREF1058_RS13275 0.46 -0.4 1,540,216 + HMPREF1058_RS13275 0.47 -0.2 1,540,217 - HMPREF1058_RS13275 0.47 -0.3 1,540,217 - HMPREF1058_RS13275 0.47 -0.0 1,540,217 - HMPREF1058_RS13275 0.47 -1.7 1,540,249 + HMPREF1058_RS13275 0.49 +0.5 1,540,288 + HMPREF1058_RS13275 0.52 +0.3 1,540,371 - HMPREF1058_RS13275 0.58 -1.5 1,540,371 - HMPREF1058_RS13275 0.58 -0.2 1,540,381 + HMPREF1058_RS13275 0.58 -1.1 1,540,382 - HMPREF1058_RS13275 0.58 +1.3 1,540,395 - HMPREF1058_RS13275 0.59 +0.1 1,540,427 + HMPREF1058_RS13275 0.62 +1.0 1,540,465 + HMPREF1058_RS13275 0.64 -0.3 1,540,466 - HMPREF1058_RS13275 0.64 +0.9 1,540,486 + HMPREF1058_RS13275 0.66 -1.3 1,540,553 + HMPREF1058_RS13275 0.71 -0.5 1,540,553 + HMPREF1058_RS13275 0.71 -0.5 1,540,664 + HMPREF1058_RS13275 0.78 -1.2 1,540,676 - HMPREF1058_RS13275 0.79 +0.5 1,540,768 + HMPREF1058_RS13275 0.86 -2.3 1,540,768 + HMPREF1058_RS13275 0.86 -1.0 1,540,769 - HMPREF1058_RS13275 0.86 +1.9 1,540,769 - HMPREF1058_RS13275 0.86 +0.3 1,540,858 + +1.6 1,540,883 - -1.7 1,540,921 + +0.9 1,540,939 - +1.1 1,540,940 + -0.1 1,540,941 - -1.3 1,541,015 - +1.0 1,541,032 + -2.1 1,541,033 - -0.7 1,541,108 + -1.7 1,541,120 - +0.6 1,541,123 + -0.9 1,541,123 + +0.2 1,541,169 + HMPREF1058_RS13270 0.11 +1.9 1,541,258 + HMPREF1058_RS13270 0.18 +0.8 1,541,304 - HMPREF1058_RS13270 0.22 +2.5 1,541,306 + HMPREF1058_RS13270 0.22 -2.4 1,541,307 - HMPREF1058_RS13270 0.22 +0.4 1,541,372 - HMPREF1058_RS13270 0.27 -0.3 1,541,382 - HMPREF1058_RS13270 0.28 -0.1 1,541,393 - HMPREF1058_RS13270 0.29 +0.1 1,541,409 - HMPREF1058_RS13270 0.30 -1.0 1,541,409 - HMPREF1058_RS13270 0.30 +1.3 1,541,563 + HMPREF1058_RS13270 0.43 +1.7 1,541,568 + HMPREF1058_RS13270 0.43 +0.6 1,541,569 - -1.0 1,541,569 - HMPREF1058_RS13270 0.43 -0.7 1,541,604 + HMPREF1058_RS13270 0.46 -0.3 1,541,694 + HMPREF1058_RS13270 0.53 +0.0 1,541,694 + HMPREF1058_RS13270 0.53 +0.3 1,541,879 + HMPREF1058_RS13270 0.68 -2.4 1,541,879 + HMPREF1058_RS13270 0.68 +0.5 1,541,933 - HMPREF1058_RS13270 0.72 +1.1 1,541,955 - HMPREF1058_RS13270 0.74 +0.7 1,541,957 + HMPREF1058_RS13270 0.74 -0.9 1,541,958 - HMPREF1058_RS13270 0.74 +0.2
Or see this region's nucleotide sequence