Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03615 and HMPREF1058_RS03610 are separated by 57 nucleotides HMPREF1058_RS03610 and HMPREF1058_RS03605 overlap by 1 nucleotides HMPREF1058_RS03605 and HMPREF1058_RS03600 are separated by 4 nucleotides
HMPREF1058_RS03615: HMPREF1058_RS03615 - glycosyltransferase, at 237,269 to 238,279
_RS03615
HMPREF1058_RS03610: HMPREF1058_RS03610 - glycosyltransferase family 4 protein, at 238,337 to 239,446
_RS03610
HMPREF1058_RS03605: HMPREF1058_RS03605 - glycosyltransferase family 2 protein, at 239,446 to 240,321
_RS03605
HMPREF1058_RS03600: HMPREF1058_RS03600 - oligosaccharide repeat unit polymerase, at 240,326 to 241,426
_RS03600
Position (kb) 238
239
240 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 237.338 kb on - strand at 237.392 kb on - strand, within HMPREF1058_RS03615 at 237.398 kb on + strand, within HMPREF1058_RS03615 at 237.440 kb on + strand, within HMPREF1058_RS03615 at 237.459 kb on + strand, within HMPREF1058_RS03615 at 237.480 kb on - strand, within HMPREF1058_RS03615 at 237.487 kb on + strand, within HMPREF1058_RS03615 at 237.487 kb on + strand, within HMPREF1058_RS03615 at 237.488 kb on - strand, within HMPREF1058_RS03615 at 237.495 kb on - strand, within HMPREF1058_RS03615 at 237.533 kb on - strand, within HMPREF1058_RS03615 at 237.537 kb on - strand, within HMPREF1058_RS03615 at 237.549 kb on - strand, within HMPREF1058_RS03615 at 237.572 kb on - strand, within HMPREF1058_RS03615 at 237.626 kb on + strand, within HMPREF1058_RS03615 at 237.626 kb on + strand, within HMPREF1058_RS03615 at 237.641 kb on - strand, within HMPREF1058_RS03615 at 237.683 kb on + strand, within HMPREF1058_RS03615 at 237.685 kb on + strand, within HMPREF1058_RS03615 at 237.751 kb on + strand, within HMPREF1058_RS03615 at 237.765 kb on - strand, within HMPREF1058_RS03615 at 237.765 kb on - strand, within HMPREF1058_RS03615 at 237.826 kb on + strand, within HMPREF1058_RS03615 at 237.863 kb on + strand, within HMPREF1058_RS03615 at 237.864 kb on - strand, within HMPREF1058_RS03615 at 237.886 kb on - strand, within HMPREF1058_RS03615 at 237.886 kb on - strand, within HMPREF1058_RS03615 at 237.923 kb on + strand, within HMPREF1058_RS03615 at 237.979 kb on + strand, within HMPREF1058_RS03615 at 237.980 kb on - strand, within HMPREF1058_RS03615 at 238.008 kb on + strand, within HMPREF1058_RS03615 at 238.034 kb on + strand, within HMPREF1058_RS03615 at 238.035 kb on - strand, within HMPREF1058_RS03615 at 238.035 kb on - strand, within HMPREF1058_RS03615 at 238.039 kb on + strand, within HMPREF1058_RS03615 at 238.040 kb on - strand, within HMPREF1058_RS03615 at 238.047 kb on - strand, within HMPREF1058_RS03615 at 238.047 kb on - strand, within HMPREF1058_RS03615 at 238.055 kb on - strand, within HMPREF1058_RS03615 at 238.265 kb on - strand at 238.272 kb on + strand at 238.338 kb on + strand at 238.339 kb on - strand at 238.339 kb on - strand at 238.416 kb on + strand at 238.417 kb on - strand at 238.469 kb on - strand, within HMPREF1058_RS03610 at 238.491 kb on - strand, within HMPREF1058_RS03610 at 238.537 kb on + strand, within HMPREF1058_RS03610 at 238.553 kb on - strand, within HMPREF1058_RS03610 at 238.620 kb on + strand, within HMPREF1058_RS03610 at 238.658 kb on + strand, within HMPREF1058_RS03610 at 238.658 kb on + strand, within HMPREF1058_RS03610 at 238.667 kb on + strand, within HMPREF1058_RS03610 at 238.667 kb on + strand, within HMPREF1058_RS03610 at 238.667 kb on + strand, within HMPREF1058_RS03610 at 238.673 kb on - strand, within HMPREF1058_RS03610 at 238.799 kb on + strand, within HMPREF1058_RS03610 at 238.827 kb on + strand, within HMPREF1058_RS03610 at 238.828 kb on - strand, within HMPREF1058_RS03610 at 238.844 kb on + strand, within HMPREF1058_RS03610 at 238.850 kb on - strand, within HMPREF1058_RS03610 at 238.861 kb on + strand, within HMPREF1058_RS03610 at 238.861 kb on + strand, within HMPREF1058_RS03610 at 238.901 kb on + strand, within HMPREF1058_RS03610 at 238.919 kb on + strand, within HMPREF1058_RS03610 at 239.009 kb on + strand, within HMPREF1058_RS03610 at 239.060 kb on + strand, within HMPREF1058_RS03610 at 239.060 kb on + strand, within HMPREF1058_RS03610 at 239.063 kb on + strand, within HMPREF1058_RS03610 at 239.122 kb on + strand, within HMPREF1058_RS03610 at 239.123 kb on - strand, within HMPREF1058_RS03610 at 239.129 kb on + strand, within HMPREF1058_RS03610 at 239.171 kb on - strand, within HMPREF1058_RS03610 at 239.174 kb on + strand, within HMPREF1058_RS03610 at 239.175 kb on - strand, within HMPREF1058_RS03610 at 239.175 kb on - strand, within HMPREF1058_RS03610 at 239.175 kb on - strand, within HMPREF1058_RS03610 at 239.175 kb on - strand, within HMPREF1058_RS03610 at 239.180 kb on - strand, within HMPREF1058_RS03610 at 239.193 kb on - strand, within HMPREF1058_RS03610 at 239.193 kb on - strand, within HMPREF1058_RS03610 at 239.201 kb on + strand, within HMPREF1058_RS03610 at 239.201 kb on + strand, within HMPREF1058_RS03610 at 239.203 kb on + strand, within HMPREF1058_RS03610 at 239.207 kb on - strand, within HMPREF1058_RS03610 at 239.211 kb on - strand, within HMPREF1058_RS03610 at 239.211 kb on - strand, within HMPREF1058_RS03610 at 239.222 kb on + strand, within HMPREF1058_RS03610 at 239.261 kb on + strand, within HMPREF1058_RS03610 at 239.269 kb on + strand, within HMPREF1058_RS03610 at 239.270 kb on - strand, within HMPREF1058_RS03610 at 239.302 kb on - strand, within HMPREF1058_RS03610 at 239.303 kb on + strand, within HMPREF1058_RS03610 at 239.304 kb on - strand, within HMPREF1058_RS03610 at 239.305 kb on + strand, within HMPREF1058_RS03610 at 239.306 kb on - strand, within HMPREF1058_RS03610 at 239.306 kb on - strand, within HMPREF1058_RS03610 at 239.401 kb on + strand at 239.473 kb on + strand at 239.473 kb on + strand at 239.477 kb on - strand at 239.478 kb on + strand at 239.482 kb on + strand at 239.553 kb on - strand, within HMPREF1058_RS03605 at 239.584 kb on + strand, within HMPREF1058_RS03605 at 239.585 kb on - strand, within HMPREF1058_RS03605 at 239.586 kb on + strand, within HMPREF1058_RS03605 at 239.588 kb on + strand, within HMPREF1058_RS03605 at 239.588 kb on + strand, within HMPREF1058_RS03605 at 239.588 kb on + strand, within HMPREF1058_RS03605 at 239.588 kb on + strand, within HMPREF1058_RS03605 at 239.588 kb on + strand, within HMPREF1058_RS03605 at 239.589 kb on - strand, within HMPREF1058_RS03605 at 239.589 kb on - strand, within HMPREF1058_RS03605 at 239.607 kb on - strand, within HMPREF1058_RS03605 at 239.614 kb on - strand, within HMPREF1058_RS03605 at 239.618 kb on + strand, within HMPREF1058_RS03605 at 239.641 kb on - strand, within HMPREF1058_RS03605 at 239.688 kb on + strand, within HMPREF1058_RS03605 at 239.743 kb on + strand, within HMPREF1058_RS03605 at 239.743 kb on + strand, within HMPREF1058_RS03605 at 239.750 kb on + strand, within HMPREF1058_RS03605 at 239.799 kb on + strand, within HMPREF1058_RS03605 at 239.799 kb on + strand, within HMPREF1058_RS03605 at 239.900 kb on + strand, within HMPREF1058_RS03605 at 239.990 kb on + strand, within HMPREF1058_RS03605 at 239.990 kb on + strand, within HMPREF1058_RS03605 at 240.042 kb on - strand, within HMPREF1058_RS03605 at 240.058 kb on - strand, within HMPREF1058_RS03605 at 240.083 kb on + strand, within HMPREF1058_RS03605 at 240.084 kb on - strand, within HMPREF1058_RS03605 at 240.084 kb on - strand, within HMPREF1058_RS03605 at 240.084 kb on - strand, within HMPREF1058_RS03605 at 240.103 kb on - strand, within HMPREF1058_RS03605 at 240.103 kb on - strand, within HMPREF1058_RS03605 at 240.105 kb on + strand, within HMPREF1058_RS03605 at 240.114 kb on + strand, within HMPREF1058_RS03605 at 240.114 kb on + strand, within HMPREF1058_RS03605 at 240.115 kb on - strand, within HMPREF1058_RS03605 at 240.227 kb on - strand, within HMPREF1058_RS03605 at 240.242 kb on + strand at 240.281 kb on + strand at 240.282 kb on - strand at 240.294 kb on + strand at 240.297 kb on - strand at 240.297 kb on - strand at 240.343 kb on + strand at 240.350 kb on + strand at 240.350 kb on + strand at 240.350 kb on + strand at 240.394 kb on + strand at 240.394 kb on + strand at 240.394 kb on + strand at 240.396 kb on + strand at 240.396 kb on + strand at 240.396 kb on + strand at 240.396 kb on + strand at 240.396 kb on + strand at 240.396 kb on + strand at 240.397 kb on - strand at 240.397 kb on - strand at 240.397 kb on - strand at 240.398 kb on + strand at 240.399 kb on - strand at 240.407 kb on - strand at 240.418 kb on + strand at 240.437 kb on + strand, within HMPREF1058_RS03600 at 240.438 kb on - strand, within HMPREF1058_RS03600 at 240.446 kb on - strand, within HMPREF1058_RS03600
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) remove 237,338 - +1.2 237,392 - HMPREF1058_RS03615 0.12 +1.8 237,398 + HMPREF1058_RS03615 0.13 -1.9 237,440 + HMPREF1058_RS03615 0.17 -2.4 237,459 + HMPREF1058_RS03615 0.19 -0.6 237,480 - HMPREF1058_RS03615 0.21 +2.4 237,487 + HMPREF1058_RS03615 0.22 -2.3 237,487 + HMPREF1058_RS03615 0.22 +2.6 237,488 - HMPREF1058_RS03615 0.22 +0.4 237,495 - HMPREF1058_RS03615 0.22 -1.1 237,533 - HMPREF1058_RS03615 0.26 +4.1 237,537 - HMPREF1058_RS03615 0.27 +2.1 237,549 - HMPREF1058_RS03615 0.28 +2.2 237,572 - HMPREF1058_RS03615 0.30 +3.7 237,626 + HMPREF1058_RS03615 0.35 +4.1 237,626 + HMPREF1058_RS03615 0.35 -1.6 237,641 - HMPREF1058_RS03615 0.37 +0.5 237,683 + HMPREF1058_RS03615 0.41 +1.7 237,685 + HMPREF1058_RS03615 0.41 -0.5 237,751 + HMPREF1058_RS03615 0.48 -0.8 237,765 - HMPREF1058_RS03615 0.49 +1.3 237,765 - HMPREF1058_RS03615 0.49 +2.3 237,826 + HMPREF1058_RS03615 0.55 +1.3 237,863 + HMPREF1058_RS03615 0.59 +0.4 237,864 - HMPREF1058_RS03615 0.59 +3.7 237,886 - HMPREF1058_RS03615 0.61 +1.0 237,886 - HMPREF1058_RS03615 0.61 +5.1 237,923 + HMPREF1058_RS03615 0.65 +3.3 237,979 + HMPREF1058_RS03615 0.70 +1.1 237,980 - HMPREF1058_RS03615 0.70 -1.9 238,008 + HMPREF1058_RS03615 0.73 -2.5 238,034 + HMPREF1058_RS03615 0.76 +0.9 238,035 - HMPREF1058_RS03615 0.76 -1.4 238,035 - HMPREF1058_RS03615 0.76 -2.5 238,039 + HMPREF1058_RS03615 0.76 +3.7 238,040 - HMPREF1058_RS03615 0.76 -0.9 238,047 - HMPREF1058_RS03615 0.77 -1.1 238,047 - HMPREF1058_RS03615 0.77 +1.2 238,055 - HMPREF1058_RS03615 0.78 -2.1 238,265 - -3.4 238,272 + +0.9 238,338 + +1.6 238,339 - +2.1 238,339 - +1.2 238,416 + +1.3 238,417 - +4.8 238,469 - HMPREF1058_RS03610 0.12 +1.2 238,491 - HMPREF1058_RS03610 0.14 +3.7 238,537 + HMPREF1058_RS03610 0.18 -1.1 238,553 - HMPREF1058_RS03610 0.19 +4.5 238,620 + HMPREF1058_RS03610 0.25 -0.1 238,658 + HMPREF1058_RS03610 0.29 +0.9 238,658 + HMPREF1058_RS03610 0.29 +0.7 238,667 + HMPREF1058_RS03610 0.30 -1.1 238,667 + HMPREF1058_RS03610 0.30 -1.4 238,667 + HMPREF1058_RS03610 0.30 +0.9 238,673 - HMPREF1058_RS03610 0.30 +0.9 238,799 + HMPREF1058_RS03610 0.42 +0.1 238,827 + HMPREF1058_RS03610 0.44 +0.5 238,828 - HMPREF1058_RS03610 0.44 +1.3 238,844 + HMPREF1058_RS03610 0.46 +3.8 238,850 - HMPREF1058_RS03610 0.46 +3.2 238,861 + HMPREF1058_RS03610 0.47 +0.7 238,861 + HMPREF1058_RS03610 0.47 -0.4 238,901 + HMPREF1058_RS03610 0.51 -0.4 238,919 + HMPREF1058_RS03610 0.52 +3.8 239,009 + HMPREF1058_RS03610 0.61 +0.3 239,060 + HMPREF1058_RS03610 0.65 -0.4 239,060 + HMPREF1058_RS03610 0.65 -0.9 239,063 + HMPREF1058_RS03610 0.65 -0.1 239,122 + HMPREF1058_RS03610 0.71 -2.3 239,123 - HMPREF1058_RS03610 0.71 +2.1 239,129 + HMPREF1058_RS03610 0.71 -1.8 239,171 - HMPREF1058_RS03610 0.75 +1.8 239,174 + HMPREF1058_RS03610 0.75 +0.0 239,175 - HMPREF1058_RS03610 0.75 -1.4 239,175 - HMPREF1058_RS03610 0.75 -1.2 239,175 - HMPREF1058_RS03610 0.75 +0.6 239,175 - HMPREF1058_RS03610 0.75 +1.5 239,180 - HMPREF1058_RS03610 0.76 +5.4 239,193 - HMPREF1058_RS03610 0.77 -1.2 239,193 - HMPREF1058_RS03610 0.77 -1.1 239,201 + HMPREF1058_RS03610 0.78 -1.8 239,201 + HMPREF1058_RS03610 0.78 -0.4 239,203 + HMPREF1058_RS03610 0.78 -0.9 239,207 - HMPREF1058_RS03610 0.78 +0.4 239,211 - HMPREF1058_RS03610 0.79 +1.9 239,211 - HMPREF1058_RS03610 0.79 +0.8 239,222 + HMPREF1058_RS03610 0.80 -0.1 239,261 + HMPREF1058_RS03610 0.83 -1.8 239,269 + HMPREF1058_RS03610 0.84 -0.7 239,270 - HMPREF1058_RS03610 0.84 -0.6 239,302 - HMPREF1058_RS03610 0.87 -0.9 239,303 + HMPREF1058_RS03610 0.87 +1.4 239,304 - HMPREF1058_RS03610 0.87 -1.1 239,305 + HMPREF1058_RS03610 0.87 -2.8 239,306 - HMPREF1058_RS03610 0.87 +1.3 239,306 - HMPREF1058_RS03610 0.87 -0.4 239,401 + +3.8 239,473 + -2.0 239,473 + +1.7 239,477 - +1.2 239,478 + -1.4 239,482 + +1.6 239,553 - HMPREF1058_RS03605 0.12 +0.9 239,584 + HMPREF1058_RS03605 0.16 -1.5 239,585 - HMPREF1058_RS03605 0.16 +1.3 239,586 + HMPREF1058_RS03605 0.16 +3.1 239,588 + HMPREF1058_RS03605 0.16 +2.1 239,588 + HMPREF1058_RS03605 0.16 -0.6 239,588 + HMPREF1058_RS03605 0.16 +1.9 239,588 + HMPREF1058_RS03605 0.16 -2.1 239,588 + HMPREF1058_RS03605 0.16 +3.6 239,589 - HMPREF1058_RS03605 0.16 -0.4 239,589 - HMPREF1058_RS03605 0.16 -0.4 239,607 - HMPREF1058_RS03605 0.18 -1.5 239,614 - HMPREF1058_RS03605 0.19 +2.7 239,618 + HMPREF1058_RS03605 0.20 -1.6 239,641 - HMPREF1058_RS03605 0.22 -1.5 239,688 + HMPREF1058_RS03605 0.28 -0.4 239,743 + HMPREF1058_RS03605 0.34 -0.1 239,743 + HMPREF1058_RS03605 0.34 -2.5 239,750 + HMPREF1058_RS03605 0.35 +2.2 239,799 + HMPREF1058_RS03605 0.40 +0.9 239,799 + HMPREF1058_RS03605 0.40 +0.4 239,900 + HMPREF1058_RS03605 0.52 -0.7 239,990 + HMPREF1058_RS03605 0.62 -2.6 239,990 + HMPREF1058_RS03605 0.62 +0.4 240,042 - HMPREF1058_RS03605 0.68 +2.9 240,058 - HMPREF1058_RS03605 0.70 +0.9 240,083 + HMPREF1058_RS03605 0.73 +1.9 240,084 - HMPREF1058_RS03605 0.73 -0.6 240,084 - HMPREF1058_RS03605 0.73 -0.4 240,084 - HMPREF1058_RS03605 0.73 -0.6 240,103 - HMPREF1058_RS03605 0.75 +3.5 240,103 - HMPREF1058_RS03605 0.75 -1.1 240,105 + HMPREF1058_RS03605 0.75 -2.2 240,114 + HMPREF1058_RS03605 0.76 +0.9 240,114 + HMPREF1058_RS03605 0.76 +2.3 240,115 - HMPREF1058_RS03605 0.76 -0.1 240,227 - HMPREF1058_RS03605 0.89 -0.9 240,242 + +2.3 240,281 + +3.1 240,282 - -0.4 240,294 + -0.1 240,297 - -2.7 240,297 - +0.9 240,343 + +0.1 240,350 + +0.7 240,350 + +2.9 240,350 + +1.6 240,394 + +2.4 240,394 + -1.8 240,394 + -0.1 240,396 + -0.9 240,396 + +0.7 240,396 + +0.6 240,396 + -0.1 240,396 + +5.3 240,396 + +2.3 240,397 - +2.5 240,397 - +0.4 240,397 - +0.4 240,398 + +1.8 240,399 - -1.2 240,407 - -1.1 240,418 + +0.8 240,437 + HMPREF1058_RS03600 0.10 -3.6 240,438 - HMPREF1058_RS03600 0.10 -0.6 240,446 - HMPREF1058_RS03600 0.11 +0.4
Or see this region's nucleotide sequence