Experiment: Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09975 and HMPREF1058_RS09970 are separated by 24 nucleotides HMPREF1058_RS09970 and HMPREF1058_RS09965 are separated by 20 nucleotides HMPREF1058_RS09965 and HMPREF1058_RS09960 overlap by 4 nucleotides HMPREF1058_RS09960 and HMPREF1058_RS09955 are separated by 45 nucleotides HMPREF1058_RS09955 and HMPREF1058_RS20750 are separated by 117 nucleotides
HMPREF1058_RS09975: HMPREF1058_RS09975 - PcfJ family protein, at 753,367 to 754,656
_RS09975
HMPREF1058_RS09970: HMPREF1058_RS09970 - hypothetical protein, at 754,681 to 754,938
_RS09970
HMPREF1058_RS09965: HMPREF1058_RS09965 - DUF3873 domain-containing protein, at 754,959 to 755,192
_RS09965
HMPREF1058_RS09960: HMPREF1058_RS09960 - hypothetical protein, at 755,189 to 755,434
_RS09960
HMPREF1058_RS09955: HMPREF1058_RS09955 - hypothetical protein, at 755,480 to 755,788
_RS09955
HMPREF1058_RS20750: HMPREF1058_RS20750 - hypothetical protein, at 755,906 to 756,127
_RS20750
Position (kb) 754
755 Strain fitness (log2 ratio) -2
-1
0
1 at 753.774 kb on + strand, within HMPREF1058_RS09975 at 753.774 kb on + strand, within HMPREF1058_RS09975 at 753.775 kb on - strand, within HMPREF1058_RS09975 at 753.818 kb on - strand, within HMPREF1058_RS09975 at 753.821 kb on - strand, within HMPREF1058_RS09975 at 753.828 kb on - strand, within HMPREF1058_RS09975 at 753.959 kb on - strand, within HMPREF1058_RS09975 at 754.107 kb on - strand, within HMPREF1058_RS09975 at 754.107 kb on - strand, within HMPREF1058_RS09975 at 754.111 kb on - strand, within HMPREF1058_RS09975 at 754.160 kb on + strand, within HMPREF1058_RS09975 at 754.205 kb on - strand, within HMPREF1058_RS09975 at 754.246 kb on - strand, within HMPREF1058_RS09975 at 754.246 kb on - strand, within HMPREF1058_RS09975 at 754.344 kb on - strand, within HMPREF1058_RS09975 at 754.655 kb on - strand at 754.658 kb on - strand at 754.688 kb on + strand at 754.843 kb on + strand, within HMPREF1058_RS09970 at 754.867 kb on + strand, within HMPREF1058_RS09970 at 754.985 kb on + strand, within HMPREF1058_RS09965 at 754.988 kb on - strand, within HMPREF1058_RS09965 at 754.988 kb on - strand, within HMPREF1058_RS09965 at 755.035 kb on + strand, within HMPREF1058_RS09965 at 755.036 kb on - strand, within HMPREF1058_RS09965 at 755.150 kb on + strand, within HMPREF1058_RS09965 at 755.201 kb on + strand at 755.233 kb on + strand, within HMPREF1058_RS09960 at 755.344 kb on + strand, within HMPREF1058_RS09960 at 755.508 kb on + strand at 755.728 kb on - strand, within HMPREF1058_RS09955 at 755.811 kb on + strand at 755.816 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C) remove 753,774 + HMPREF1058_RS09975 0.32 +1.4 753,774 + HMPREF1058_RS09975 0.32 -0.6 753,775 - HMPREF1058_RS09975 0.32 -0.5 753,818 - HMPREF1058_RS09975 0.35 -0.5 753,821 - HMPREF1058_RS09975 0.35 -0.2 753,828 - HMPREF1058_RS09975 0.36 -0.3 753,959 - HMPREF1058_RS09975 0.46 -0.2 754,107 - HMPREF1058_RS09975 0.57 -0.2 754,107 - HMPREF1058_RS09975 0.57 +0.5 754,111 - HMPREF1058_RS09975 0.58 -0.6 754,160 + HMPREF1058_RS09975 0.61 -0.5 754,205 - HMPREF1058_RS09975 0.65 +0.0 754,246 - HMPREF1058_RS09975 0.68 +0.2 754,246 - HMPREF1058_RS09975 0.68 +0.8 754,344 - HMPREF1058_RS09975 0.76 +0.5 754,655 - -0.2 754,658 - +0.3 754,688 + -1.4 754,843 + HMPREF1058_RS09970 0.63 -1.6 754,867 + HMPREF1058_RS09970 0.72 -1.1 754,985 + HMPREF1058_RS09965 0.11 -1.9 754,988 - HMPREF1058_RS09965 0.12 +0.1 754,988 - HMPREF1058_RS09965 0.12 -1.0 755,035 + HMPREF1058_RS09965 0.32 +0.3 755,036 - HMPREF1058_RS09965 0.33 -1.6 755,150 + HMPREF1058_RS09965 0.82 +1.2 755,201 + +1.0 755,233 + HMPREF1058_RS09960 0.18 +0.8 755,344 + HMPREF1058_RS09960 0.63 -0.2 755,508 + +0.2 755,728 - HMPREF1058_RS09955 0.80 -0.1 755,811 + -0.3 755,816 + +1.5
Or see this region's nucleotide sequence